FvH4_4g36740

YGGT family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0011124
Physical Location & Seq
Reverse (-)
33531969 .. 33533168
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g36740.t4

Sequence Viewer

Length: 612 bp
ATGGCTACCTGTTCTTATCTTCTCAATCATGCTCACATTAAAGGATGGCCTTCAAGGATAAGGATATCCAAGCATGGAAATCCCACAATCAGTATTATGCAGGAGAGCTTTACGTGTCCCAGAAGGCAAAGACTTGTAATTGCACAATGTTCTACCTCATATCTGACTGAAGTCGGAGCCTCTCCTAGCATTTCCGGGAAGCCATTTGATCCCCATTTTTCGGTTTCCGAGATCCTCAGGGTGATCGACATGCCAGAAACATCACATACCGCCGTCTCGAGTTTCATGCACAAGTTGGTGGTGGCAGATTTGGACCCTGCAACAGCAAAGCTCGCCATTGCGTTTCTAGGACCCTTTCTGGCTCTGTTTTCATTTCTCTTCATTGTAAGAATTGTGATGTCTTGGTACCCGAAAATTCCTGTGGGGAAGTTCCCATATGTCTTGGCTTACGCTCCCACAGAGCCAATTCTCATCCCAACCAGAAAGGTGATCCCTCCATTAGGGGGTGTGGATGTAACCCCTGTGGTCTGGTTTGGATTGATTAGTTTCCTAAATGAGATATTAATAGGTCCACAAGGGCTCCTTGTGCTTCTATCTCAACAAGTTAACTGA

Protein Analysis

204

Amino Acids

22.38

Weight (kDa)

9.27

Isoelectric Point (pI)

46.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCB3_YggT PF02325 36 - 105 7.8e-18 CCB3/YggT
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 405
AccB1I GGYRCC 1 cut(s) 405
AciI CCGC 1 cut(s) 270
AclWI GGATC 3 cut(s) 203, 226, 484
AcsI RAATTY 1 cut(s) 414
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 3 cut(s) 220, 500, 503
AflIII ACRYGT 1 cut(s) 113
AgsI TTSAA 1 cut(s) 54
AluBI AGCT 2 cut(s) 108, 331
AluI AGCT 2 cut(s) 108, 331
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 3 cut(s) 203, 226, 484
Ama87I CYCGRG 1 cut(s) 277
AoxI GGCC 1 cut(s) 47
ApoI RAATTY 1 cut(s) 414
AseI ATTAAT 1 cut(s) 563
Asp718I GGTACC 1 cut(s) 405
AspS9I GGNCC 3 cut(s) 313, 350, 569
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 253, 499
AvaI CYCGRG 1 cut(s) 277
AvaII GGWCC 3 cut(s) 313, 350, 569
AxyI CCTNAGG 1 cut(s) 236
BanI GGYRCC 1 cut(s) 405
BanII GRGCYC 1 cut(s) 582
BccI CCATC 1 cut(s) 39
BceAI ACGGC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 268, 302
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 2 cut(s) 186, 347
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 3 cut(s) 313, 350, 569
BmeT110I CYCGRG 1 cut(s) 277
BmgT120I GGNCC 3 cut(s) 313, 350, 569
BmiI GGNNCC 5 cut(s) 178, 315, 352, 407, 581
BmrFI CCNGG 1 cut(s) 196
BoxI GACNNNNGTC 1 cut(s) 170
BpuMI CCSGG 1 cut(s) 196
BsaAI YACGTR 1 cut(s) 114
BsaXI ACNNNNNCTCC 2 cut(s) 564, 594
Bsc4I CCNNNNNNNGG 3 cut(s) 220, 500, 503
Bse21I CCTNAGG 1 cut(s) 236
Bse3DI GCAATG 1 cut(s) 336
BseGI GGATG 3 cut(s) 50, 471, 517
BseLI CCNNNNNNNGG 3 cut(s) 220, 500, 503
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 250
BshFI GGCC 1 cut(s) 49
BshNI GGYRCC 1 cut(s) 405
BsiHKCI CYCGRG 1 cut(s) 277
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 102
BslI CCNNNNNNNGG 3 cut(s) 220, 500, 503
BsmAI GTCTC 1 cut(s) 280
BsmBI CGTCTC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 102
BsnI GGCC 1 cut(s) 49
BsoBI CYCGRG 1 cut(s) 277
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 4 cut(s) 208, 231, 243, 489
BspACI CCGC 1 cut(s) 270
BspANI GGCC 1 cut(s) 49
BspCNI CTCAG 1 cut(s) 249
BspLI GGNNCC 5 cut(s) 178, 315, 352, 407, 581
BspPI GGATC 3 cut(s) 203, 226, 484
BspT107I GGYRCC 1 cut(s) 405
BsrDI GCAATG 1 cut(s) 336
BssMI GATC 4 cut(s) 208, 231, 243, 489
Bst6I CTCTTC 1 cut(s) 383
BstBAI YACGTR 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 333
BstDEI CTNAG 1 cut(s) 236
BstENI CCTNNNNNAGG 1 cut(s) 498
BstF5I GGATG 3 cut(s) 50, 471, 517
BstKTI GATC 4 cut(s) 211, 234, 246, 492
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 4 cut(s) 208, 231, 243, 489
BstMWI GCNNNNNNNGC 2 cut(s) 332, 586
BstNSI RCATGY 1 cut(s) 253
BstPAI GACNNNNGTC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 194
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
Bsu36I CCTNAGG 1 cut(s) 236
BsuRI GGCC 1 cut(s) 49
BtsCI GGATG 3 cut(s) 50, 471, 517
Cac8I GCNNGC 1 cut(s) 333
Cfr13I GGNCC 3 cut(s) 313, 350, 569
Csp6I GTAC 1 cut(s) 406
CviAII CATG 4 cut(s) 29, 74, 250, 286
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 1 cut(s) 236
DpnI GATC 4 cut(s) 210, 233, 245, 491
DpnII GATC 4 cut(s) 208, 231, 243, 489
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
Eco24I GRGCYC 1 cut(s) 582
Eco32I GATATC 1 cut(s) 66
Eco47I GGWCC 3 cut(s) 313, 350, 569
Eco57I CTGAAG 1 cut(s) 189
Eco81I CCTNAGG 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 277
EcoNI CCTNNNNNAGG 1 cut(s) 498
EcoO109I RGGNCCY 1 cut(s) 350
EcoRV GATATC 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 582
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 4 cut(s) 32, 77, 253, 289
FaiI YATR 9 cut(s) 30, 75, 98, 160, 251, 267, 287, 436, 438
FalI AAGNNNNNCTT 2 cut(s) 567, 599
FaqI GGGAC 1 cut(s) 102
FatI CATG 4 cut(s) 28, 73, 249, 285
FauNDI CATATG 1 cut(s) 436
FokI GGATG 3 cut(s) 57, 458, 524
FriOI GRGCYC 1 cut(s) 582
FspBI CTAG 2 cut(s) 186, 347
HaeIII GGCC 1 cut(s) 49
HapII CCGG 1 cut(s) 195
Hin1II CATG 4 cut(s) 32, 77, 253, 289
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 253, 499
Hpy166II GTNNAC 2 cut(s) 572, 607
Hpy188I TCNGA 3 cut(s) 165, 176, 229
Hpy188III TCNNGA 1 cut(s) 277
Hpy8I GTNNAC 2 cut(s) 572, 607
HpyAV CCTTC 2 cut(s) 60, 117
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 4 cut(s) 100, 143, 289, 320
HpyF10VI GCNNNNNNNGC 2 cut(s) 332, 586
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 113
Hsp92II CATG 4 cut(s) 32, 77, 253, 289
KpnI GGTACC 1 cut(s) 409
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 4 cut(s) 208, 231, 243, 489
LmnI GCTCC 3 cut(s) 176, 457, 585
MaeI CTAG 2 cut(s) 186, 347
MaeII ACGT 1 cut(s) 113
MaeIII GTNAC 1 cut(s) 514
MalI GATC 4 cut(s) 210, 233, 245, 491
MboI GATC 4 cut(s) 208, 231, 243, 489
MboII GAAGA 2 cut(s) 11, 370
MflI RGATCY 1 cut(s) 231
MhlI GDGCHC 1 cut(s) 582
MluCI AATT 4 cut(s) 138, 390, 414, 465
MmeI TCCRAC 1 cut(s) 154
MnlI CCTC 4 cut(s) 166, 190, 245, 504
MseI TTAA 3 cut(s) 39, 563, 606
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 196
MwoI GCNNNNNNNGC 2 cut(s) 332, 586
NciI CCSGG 1 cut(s) 196
NdeI CATATG 1 cut(s) 436
NdeII GATC 4 cut(s) 208, 231, 243, 489
NlaIII CATG 4 cut(s) 32, 77, 253, 289
NlaIV GGNNCC 5 cut(s) 178, 315, 352, 407, 581
NspI RCATGY 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 277
PfoI TCCNGGA 1 cut(s) 194
Ppu21I YACGTR 1 cut(s) 114
PpuMI RGGWCCY 1 cut(s) 350
PshAI GACNNNNGTC 1 cut(s) 170
PshBI ATTAAT 1 cut(s) 563
Psp5II RGGWCCY 1 cut(s) 350
PspN4I GGNNCC 5 cut(s) 178, 315, 352, 407, 581
PspPI GGNCC 3 cut(s) 313, 350, 569
PspPPI RGGWCCY 1 cut(s) 350
PsuI RGATCY 1 cut(s) 231
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SaqAI TTAA 3 cut(s) 39, 563, 606
Sau3AI GATC 4 cut(s) 208, 231, 243, 489
Sau96I GGNCC 3 cut(s) 313, 350, 569
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 1 cut(s) 582
SetI ASST 7 cut(s) 11, 110, 116, 158, 333, 489, 571
Sfr274I CTCGAG 1 cut(s) 277
SinI GGWCC 3 cut(s) 313, 350, 569
SlaI CTCGAG 1 cut(s) 277
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
Sse9I AATT 4 cut(s) 138, 390, 414, 465
SsiI CCGC 1 cut(s) 270
SspMI CTAG 2 cut(s) 186, 347
StyD4I CCNGG 1 cut(s) 194
TaiI ACGT 1 cut(s) 116
TaqI TCGA 2 cut(s) 246, 278
TasI AATT 4 cut(s) 138, 390, 414, 465
Tru1I TTAA 3 cut(s) 39, 563, 606
Tru9I TTAA 3 cut(s) 39, 563, 606
TspDTI ATGAA 3 cut(s) 274, 360, 370
VpaK11BI GGWCC 3 cut(s) 313, 350, 569
VspI ATTAAT 1 cut(s) 563
XagI CCTNNNNNAGG 1 cut(s) 498
XapI RAATTY 1 cut(s) 414
XceI RCATGY 1 cut(s) 253
XhoI CTCGAG 1 cut(s) 277
XspI CTAG 2 cut(s) 186, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.