Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011124

Physical Location & Seq

Genomic Coordinates Forward (+)

48400092 .. 48401704

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025804

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCTACCTGTTCTTGTCTTCTCAATCATGCTCACATTAAAGGATGGCCTTCAAGGATAATGATATCCAAGCCTGGAAACCCCACAATCACTGAAAGCTTTAGGTGTCCCAGTAAAAGGCAAGGACTTGTAATTGCACAATGTTCCACCTCATGTTTGATGGAAATTGCAGCTTCGCCTAGCATTTCTGGTAAGCCATTTGATCCCCATTCGGTTTCCGAGATTCTCAGGGTGATCGACGTGCCAGAAACATCTCATACCGCTGTCTCAAATTTCATGCCCAAGTTGGTGGTGGCAGATTTGGACCCTGCTACAGCAAAGCTGCCCATTGCGTTTCTAGGACCCTTTCTGGCTCCATTTTCGTTTCTCTTCATTGTAAGAATAGTGATGTCCTGGTACCCAAAAATTCCTGTGGGGAAGTTCCCATATGTTTTGGCTTACGCTCCCACAGAGCCAATTCTCATCCCAACCAGAAAGTTGATCCCACCTTTAGGGGGTGTGGATGTAACCCCTGTGGTCTGGTTTGGATTGATTAGTTTCCTGAATGAGATATTAATAGGTCCACAAGGGCTACTTGTGCTTCTATCTCAACAAGTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YGGT

Protein Analysis

201

Amino Acids

21.79

Weight (kDa)

8.87

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCB3_YggT	PF02325	120 - 185	2.8e-16	CCB3/YggT

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36120
fragaria_vesca	FvH4_4g36740 FvH4_4g36740 FvH4_4g36740 FvH4_4g36740
malus_domestica	MD13G1007500.v1.1 MD16G1000600.v1.1
prunus_persica	Prupe.1G345500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449681 RchiOBHm_Chr4g0446461
rosa_laevigata	RLG00000005659 RLG00000025804
rosa_roxburghii	Rroxscaffold_5G00386900
rosa_rugosa	Rorug04G0371600
rosa_samantha	Rh4AG433200 Rh4BG442400 Rh4CG459700 Rh4DG441100
rosa_wichuraiana	Rw3G001730 Rw4G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	396
AccB1I	GGYRCC	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	597
AciI	CCGC	1 cut(s)	261
AclWI	GGATC	2 cut(s)	197, 475
AcsI	RAATTY	2 cut(s)	271, 405
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	3 cut(s)	117, 491, 494
AgsI	TTSAA	1 cut(s)	54
AjiI	CACGTC	1 cut(s)	241
AjnI	CCWGG	2 cut(s)	73, 392
AluBI	AGCT	3 cut(s)	99, 173, 322
AluI	AGCT	3 cut(s)	99, 173, 322
Alw26I	GTCTC	1 cut(s)	271
AlwI	GGATC	2 cut(s)	197, 475
AoxI	GGCC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	170, 322
ApoI	RAATTY	2 cut(s)	271, 405
AseI	ATTAAT	1 cut(s)	554
Asp718I	GGTACC	1 cut(s)	396
AspS9I	GGNCC	3 cut(s)	304, 341, 560
AsuHPI	GGTGA	1 cut(s)	244
AvaII	GGWCC	3 cut(s)	304, 341, 560
BanI	GGYRCC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	11
BbvI	GCAGC	2 cut(s)	182, 309
BccI	CCATC	2 cut(s)	39, 154
BciT130I	CCWGG	2 cut(s)	75, 394
BcoDI	GTCTC	1 cut(s)	271
BfaI	CTAG	2 cut(s)	180, 338
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	2 cut(s)	171, 323
BlsI	GCNGC	2 cut(s)	172, 324
Bme1390I	CCNGG	2 cut(s)	75, 394
Bme18I	GGWCC	3 cut(s)	304, 341, 560
BmgBI	CACGTC	1 cut(s)	241
BmgT120I	GGNCC	3 cut(s)	304, 341, 560
BmiI	GGNNCC	4 cut(s)	306, 343, 354, 398
BmrFI	CCNGG	2 cut(s)	75, 394
BmrI	ACTGGG	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	105
BpiI	GAAGAC	1 cut(s)	11
Bsc4I	CCNNNNNNNGG	3 cut(s)	117, 491, 494
Bse1I	ACTGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	327
BseBI	CCWGG	2 cut(s)	75, 394
BseGI	GGATG	3 cut(s)	50, 462, 508
BseLI	CCNNNNNNNGG	3 cut(s)	117, 491, 494
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	111
BseXI	GCAGC	2 cut(s)	182, 309
BshFI	GGCC	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	396
BslFI	GGGAC	1 cut(s)	93
BslI	CCNNNNNNNGG	3 cut(s)	117, 491, 494
BsmAI	GTCTC	1 cut(s)	271
BsmFI	GGGAC	1 cut(s)	93
BsnI	GGCC	1 cut(s)	49
Bsp143I	GATC	3 cut(s)	202, 234, 480
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	1 cut(s)	49
BspCNI	CTCAG	1 cut(s)	240
BspLI	GGNNCC	4 cut(s)	306, 343, 354, 398
BspPI	GGATC	2 cut(s)	197, 475
BspT107I	GGYRCC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	1 cut(s)	111
BssMI	GATC	3 cut(s)	202, 234, 480
BssNAI	GTATAC	1 cut(s)	598
Bst1107I	GTATAC	1 cut(s)	598
Bst2UI	CCWGG	2 cut(s)	75, 394
Bst6I	CTCTTC	1 cut(s)	374
BstDEI	CTNAG	1 cut(s)	227
BstF5I	GGATG	3 cut(s)	50, 462, 508
BstKTI	GATC	3 cut(s)	205, 237, 483
BstMAI	GTCTC	1 cut(s)	271
BstMBI	GATC	3 cut(s)	202, 234, 480
BstMWI	GCNNNNNNNGC	1 cut(s)	577
BstNI	CCWGG	2 cut(s)	75, 394
BstSCI	CCNGG	2 cut(s)	73, 392
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	2 cut(s)	182, 309
BstV2I	GAAGAC	1 cut(s)	11
BstXI	CCANNNNNNTGG	1 cut(s)	289
BstZ17I	GTATAC	1 cut(s)	598
BsuRI	GGCC	1 cut(s)	49
BtrI	CACGTC	1 cut(s)	241
BtsCI	GGATG	3 cut(s)	50, 462, 508
BtsIMutI	CAGTG	1 cut(s)	90
Cfr13I	GGNCC	3 cut(s)	304, 341, 560
Csp6I	GTAC	1 cut(s)	397
CviAII	CATG	3 cut(s)	29, 153, 277
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	3 cut(s)	204, 236, 482
DpnII	GATC	3 cut(s)	202, 234, 480
Eam1104I	CTCTTC	1 cut(s)	374
EarI	CTCTTC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	66
Eco47I	GGWCC	3 cut(s)	304, 341, 560
EcoO109I	RGGNCCY	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	73, 392
EcoRV	GATATC	1 cut(s)	66
FaeI	CATG	3 cut(s)	32, 156, 280
FaiI	YATR	7 cut(s)	30, 154, 258, 278, 427, 429, 598
FalI	AAGNNNNNCTT	2 cut(s)	558, 590
FaqI	GGGAC	1 cut(s)	93
FatI	CATG	3 cut(s)	28, 152, 276
FauNDI	CATATG	1 cut(s)	427
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	2 cut(s)	171, 323
FokI	GGATG	3 cut(s)	57, 449, 515
Fsp4HI	GCNGC	2 cut(s)	171, 323
FspBI	CTAG	2 cut(s)	180, 338
GluI	GCNGC	2 cut(s)	171, 323
HaeIII	GGCC	1 cut(s)	49
Hin1II	CATG	3 cut(s)	32, 156, 280
HindIII	AAGCTT	1 cut(s)	97
HinfI	GANTC	1 cut(s)	223
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	2 cut(s)	563, 598
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	541
Hpy8I	GTNNAC	2 cut(s)	563, 598
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	1 cut(s)	60
HpyCH4IV	ACGT	1 cut(s)	240
HpyCH4V	TGCA	2 cut(s)	137, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	577
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	3 cut(s)	32, 156, 280
KpnI	GGTACC	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	202, 234, 480
LmnI	GCTCC	2 cut(s)	358, 448
Lsp1109I	GCAGC	2 cut(s)	182, 309
MaeI	CTAG	2 cut(s)	180, 338
MaeII	ACGT	1 cut(s)	240
MaeIII	GTNAC	1 cut(s)	505
MalI	GATC	3 cut(s)	204, 236, 482
MboI	GATC	3 cut(s)	202, 234, 480
MboII	GAAGA	2 cut(s)	11, 361
MluCI	AATT	5 cut(s)	132, 165, 271, 405, 456
MnlI	CCTC	1 cut(s)	160
MseI	TTAA	2 cut(s)	39, 554
MspA1I	CMGCKG	1 cut(s)	263
MspR9I	CCNGG	2 cut(s)	75, 394
MvaI	CCWGG	2 cut(s)	75, 394
MwoI	GCNNNNNNNGC	1 cut(s)	577
NdeI	CATATG	1 cut(s)	427
NdeII	GATC	3 cut(s)	202, 234, 480
NlaIII	CATG	3 cut(s)	32, 156, 280
NlaIV	GGNNCC	4 cut(s)	306, 343, 354, 398
PfeI	GAWTC	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	172, 324
PpuMI	RGGWCCY	1 cut(s)	341
PshBI	ATTAAT	1 cut(s)	554
Psp5II	RGGWCCY	1 cut(s)	341
Psp6I	CCWGG	2 cut(s)	73, 392
PspGI	CCWGG	2 cut(s)	73, 392
PspN4I	GGNNCC	4 cut(s)	306, 343, 354, 398
PspPI	GGNCC	3 cut(s)	304, 341, 560
PspPPI	RGGWCCY	1 cut(s)	341
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
SaqAI	TTAA	2 cut(s)	39, 554
SatI	GCNGC	2 cut(s)	171, 323
Sau3AI	GATC	3 cut(s)	202, 234, 480
Sau96I	GGNCC	3 cut(s)	304, 341, 560
ScrFI	CCNGG	2 cut(s)	75, 394
SetI	ASST	9 cut(s)	11, 101, 107, 152, 175, 243, 324, 490, 562
SfcI	CTRYAG	1 cut(s)	312
SinI	GGWCC	3 cut(s)	304, 341, 560
Sse9I	AATT	5 cut(s)	132, 165, 271, 405, 456
SsiI	CCGC	1 cut(s)	261
SspMI	CTAG	2 cut(s)	180, 338
StyD4I	CCNGG	2 cut(s)	73, 392
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	1 cut(s)	237
TasI	AATT	5 cut(s)	132, 165, 271, 405, 456
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	2 cut(s)	39, 554
Tru9I	TTAA	2 cut(s)	39, 554
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	2 cut(s)	170, 322
TspDTI	ATGAA	2 cut(s)	265, 361
TspRI	CASTG	1 cut(s)	97
VpaK11BI	GGWCC	3 cut(s)	304, 341, 560
VspI	ATTAAT	1 cut(s)	554
XapI	RAATTY	2 cut(s)	271, 405
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XmiI	GTMKAC	1 cut(s)	597
XspI	CTAG	2 cut(s)	180, 338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.