Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0011124

Physical Location & Seq

Genomic Coordinates Forward (+)

1440408 .. 1442810

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G001730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGACTACAGAACCTATCTTTTATCATATTATCAATCAAATTAAGATTTATCTCTTTTACCTCTCGAATCCGATTCTGAAAAGCAAATTGTGCAACCTGAACAACAAGGACAAGCTGACCAGGATTACAAAGCAACGTTGGTCACTACTCTCGCCCAGATGGTCGATGTTTTCTCATTGTTGGCCTTCTCACACCGCTCCTTCCATGGGTGATTTGGACCCTGCTACAGCAAAGCTGGCCATTGCGTTTCTAGGACCCTTTCTGGCTCTATTTTCGTTTCTCTTCGTTGTAAGAATAGTGATGTCCTGGTACCCAAAGATTCCTGTGGGGAAGTTCCCATATGTTTTGGCTTACGCTCCCACAGAGCCAATTCTCATCCCAACCAGAAAGTTGATCCCACCTTTAGGGGGTGTGGACGTAACCCCTGTGGTCTGGTTTGGATTGATTAGTTTCCTGAATGAGATATTAATAGGTCCACAAGGGCTACTTGTGCTTCTATCTCAACAAGTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YGGT

Protein Analysis

171

Amino Acids

19.4

Weight (kDa)

9.7

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCB3_YggT	PF02325	87 - 156	6.1e-17	CCB3/YggT

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36120
fragaria_vesca	FvH4_4g36740 FvH4_4g36740 FvH4_4g36740 FvH4_4g36740
malus_domestica	MD13G1007500.v1.1 MD16G1000600.v1.1
prunus_persica	Prupe.1G345500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449681 RchiOBHm_Chr4g0446461
rosa_laevigata	RLG00000005659 RLG00000025804
rosa_roxburghii	Rroxscaffold_5G00386900
rosa_rugosa	Rorug04G0371600
rosa_samantha	Rh4AG433200 Rh4BG442400 Rh4CG459700 Rh4DG441100
rosa_wichuraiana	Rw3G001730 Rw4G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	309
AccB1I	GGYRCC	1 cut(s)	309
AccBSI	CCGCTC	1 cut(s)	197
AciI	CCGC	1 cut(s)	195
AclI	AACGTT	1 cut(s)	136
AclWI	GGATC	1 cut(s)	388
AcoI	YGGCCR	1 cut(s)	237
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	3 cut(s)	206, 404, 407
AjnI	CCWGG	2 cut(s)	119, 305
AluBI	AGCT	2 cut(s)	115, 235
AluI	AGCT	2 cut(s)	115, 235
AlwI	GGATC	1 cut(s)	388
AoxI	GGCC	2 cut(s)	182, 237
AseI	ATTAAT	1 cut(s)	467
Asp718I	GGTACC	1 cut(s)	309
AspS9I	GGNCC	3 cut(s)	217, 254, 473
AsuHPI	GGTGA	1 cut(s)	221
AvaII	GGWCC	3 cut(s)	217, 254, 473
BalI	TGGCCA	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	309
BccI	CCATC	1 cut(s)	153
BciT130I	CCWGG	2 cut(s)	121, 307
BfaI	CTAG	1 cut(s)	251
BfmI	CTRYAG	2 cut(s)	6, 225
Bme1390I	CCNGG	2 cut(s)	121, 307
Bme18I	GGWCC	3 cut(s)	217, 254, 473
BmgT120I	GGNCC	3 cut(s)	217, 254, 473
BmiI	GGNNCC	3 cut(s)	219, 256, 311
BmrFI	CCNGG	2 cut(s)	121, 307
BsaJI	CCNNGG	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 404, 407
Bse3DI	GCAATG	1 cut(s)	240
BseBI	CCWGG	2 cut(s)	121, 307
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	3 cut(s)	206, 404, 407
BseMI	GCAATG	1 cut(s)	240
BshFI	GGCC	2 cut(s)	184, 239
BshNI	GGYRCC	1 cut(s)	309
BslI	CCNNNNNNNGG	3 cut(s)	206, 404, 407
BsnI	GGCC	2 cut(s)	184, 239
Bsp143I	GATC	1 cut(s)	393
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	2 cut(s)	184, 239
BspLI	GGNNCC	3 cut(s)	219, 256, 311
BspPI	GGATC	1 cut(s)	388
BspT107I	GGYRCC	1 cut(s)	309
BsrBI	CCGCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	240
BssECI	CCNNGG	1 cut(s)	204
BssMI	GATC	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	204
Bst2UI	CCWGG	2 cut(s)	121, 307
Bst6I	CTCTTC	1 cut(s)	287
BstAPI	GCANNNNNTGC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	237
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	375
BstKTI	GATC	1 cut(s)	396
BstMBI	GATC	1 cut(s)	393
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 236, 490
BstNI	CCWGG	2 cut(s)	121, 307
BstSCI	CCNGG	2 cut(s)	119, 305
BstSFI	CTRYAG	2 cut(s)	6, 225
BsuRI	GGCC	2 cut(s)	184, 239
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	217, 254, 473
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	1 cut(s)	205
CviJI	RGCY	8 cut(s)	115, 184, 235, 239, 266, 350, 367, 484
CviKI_1	RGCY	8 cut(s)	115, 184, 235, 239, 266, 350, 367, 484
CviQI	GTAC	1 cut(s)	310
DpnI	GATC	1 cut(s)	395
DpnII	GATC	1 cut(s)	393
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	287
EarI	CTCTTC	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	204
Eco47I	GGWCC	3 cut(s)	217, 254, 473
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	119, 305
EcoT14I	CCWWGG	1 cut(s)	204
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	1 cut(s)	208
FaiI	YATR	4 cut(s)	27, 206, 340, 342
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FatI	CATG	1 cut(s)	204
FauNDI	CATATG	1 cut(s)	340
FokI	GGATG	1 cut(s)	362
FspBI	CTAG	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	184, 239
Hin1II	CATG	1 cut(s)	208
HinfI	GANTC	3 cut(s)	67, 73, 319
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	3 cut(s)	415, 476, 511
Hpy188I	TCNGA	2 cut(s)	72, 78
Hpy188III	TCNNGA	2 cut(s)	64, 454
Hpy8I	GTNNAC	3 cut(s)	415, 476, 511
HpyAV	CCTTC	2 cut(s)	195, 210
HpyCH4IV	ACGT	2 cut(s)	136, 417
HpyCH4V	TGCA	1 cut(s)	93
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 236, 490
HpySE526I	ACGT	2 cut(s)	136, 417
Hsp92II	CATG	1 cut(s)	208
KpnI	GGTACC	1 cut(s)	313
Kzo9I	GATC	1 cut(s)	393
LmnI	GCTCC	2 cut(s)	202, 361
MaeI	CTAG	1 cut(s)	251
MaeII	ACGT	2 cut(s)	136, 417
MaeIII	GTNAC	2 cut(s)	141, 418
MalI	GATC	1 cut(s)	395
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	1 cut(s)	393
MboII	GAAGA	1 cut(s)	274
MlsI	TGGCCA	1 cut(s)	239
MluCI	AATT	3 cut(s)	39, 86, 369
MluNI	TGGCCA	1 cut(s)	239
MnlI	CCTC	1 cut(s)	71
Mox20I	TGGCCA	1 cut(s)	239
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	2 cut(s)	42, 467
Msp20I	TGGCCA	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	121, 307
MvaI	CCWGG	2 cut(s)	121, 307
MwoI	GCNNNNNNNGC	3 cut(s)	90, 236, 490
NcoI	CCATGG	1 cut(s)	204
NdeI	CATATG	1 cut(s)	340
NdeII	GATC	1 cut(s)	393
NlaIII	CATG	1 cut(s)	208
NlaIV	GGNNCC	3 cut(s)	219, 256, 311
NmuCI	GTSAC	1 cut(s)	141
PfeI	GAWTC	3 cut(s)	67, 73, 319
PpuMI	RGGWCCY	1 cut(s)	254
PshBI	ATTAAT	1 cut(s)	467
Psp1406I	AACGTT	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	254
Psp6I	CCWGG	2 cut(s)	119, 305
PspGI	CCWGG	2 cut(s)	119, 305
PspN4I	GGNNCC	3 cut(s)	219, 256, 311
PspPI	GGNCC	3 cut(s)	217, 254, 473
PspPPI	RGGWCCY	1 cut(s)	254
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SaqAI	TTAA	2 cut(s)	42, 467
Sau3AI	GATC	1 cut(s)	393
Sau96I	GGNCC	3 cut(s)	217, 254, 473
ScrFI	CCNGG	2 cut(s)	121, 307
SetI	ASST	9 cut(s)	16, 63, 99, 117, 139, 237, 403, 420, 475
SfcI	CTRYAG	2 cut(s)	6, 225
SinI	GGWCC	3 cut(s)	217, 254, 473
Sse9I	AATT	3 cut(s)	39, 86, 369
SsiI	CCGC	1 cut(s)	195
SspMI	CTAG	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	119, 305
StyI	CCWWGG	1 cut(s)	204
TaiI	ACGT	2 cut(s)	139, 420
TaqI	TCGA	2 cut(s)	65, 164
TasI	AATT	3 cut(s)	39, 86, 369
TfiI	GAWTC	3 cut(s)	67, 73, 319
Tru1I	TTAA	2 cut(s)	42, 467
Tru9I	TTAA	2 cut(s)	42, 467
TseFI	GTSAC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	141
VpaK11BI	GGWCC	3 cut(s)	217, 254, 473
VspI	ATTAAT	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	211
XspI	CTAG	1 cut(s)	251

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.