Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0011124

Physical Location & Seq

Genomic Coordinates Reverse (-)

72745164 .. 72745607

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG433200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGAAATTGCAGCTTCGCCTAGCATTTCTGGGAAGCCATTTGATCCCCATTCGGTTTCCGAGATTCTCAGGGTGATCGACATGCCAGAAACATCTCACACCGCTGTCTCAAATTTCATGCCCAAGTTGGTGGTGGCAGATTTGGACCCTGCTACAGCAAAGCTGGCGATTGCGTTTCTAGGACCCTTTCTGGCTCTGTTTTCGTTTCTCTTCATTGTAAGAATAGTGATGTCCTGGTACCCAAAAATTCCTGTGGGGAAGTTCCCATATGTTTTGGCTTACGCTCCCACAGAGCCAATTCTCATCCCAACCAGAAAGTTGATCCCACCTTTAGGGGGCGTGGACGTAACCCCTGTGGTCTGGTTTGGATTGATTAGTTTCCTGAATGAGATATTAATAGGTCCACAAGGGCTACTTGTGCTTCTATCTCAACAAGTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YGGT

Protein Analysis

147

Amino Acids

16.01

Weight (kDa)

6.05

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCB3_YggT	PF02325	63 - 132	3.3e-17	CCB3/YggT

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36120
fragaria_vesca	FvH4_4g36740 FvH4_4g36740 FvH4_4g36740 FvH4_4g36740
malus_domestica	MD13G1007500.v1.1 MD16G1000600.v1.1
prunus_persica	Prupe.1G345500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449681 RchiOBHm_Chr4g0446461
rosa_laevigata	RLG00000005659 RLG00000025804
rosa_roxburghii	Rroxscaffold_5G00386900
rosa_rugosa	Rorug04G0371600
rosa_samantha	Rh4AG433200 Rh4BG442400 Rh4CG459700 Rh4DG441100
rosa_wichuraiana	Rw3G001730 Rw4G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	237
AciI	CCGC	1 cut(s)	102
AclWI	GGATC	2 cut(s)	38, 316
AcsI	RAATTY	2 cut(s)	112, 246
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	332, 335
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	2 cut(s)	14, 163
AluI	AGCT	2 cut(s)	14, 163
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	2 cut(s)	38, 316
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	2 cut(s)	112, 246
AseI	ATTAAT	1 cut(s)	395
Asp718I	GGTACC	1 cut(s)	237
AspS9I	GGNCC	3 cut(s)	145, 182, 401
AsuHPI	GGTGA	1 cut(s)	85
AvaII	GGWCC	3 cut(s)	145, 182, 401
BanI	GGYRCC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	23
BciT130I	CCWGG	1 cut(s)	235
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	2 cut(s)	21, 179
BfmI	CTRYAG	1 cut(s)	153
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	235
Bme18I	GGWCC	3 cut(s)	145, 182, 401
BmgT120I	GGNCC	3 cut(s)	145, 182, 401
BmiI	GGNNCC	3 cut(s)	147, 184, 239
BmrFI	CCNGG	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 335
BseBI	CCWGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	332, 335
BseMII	CTCAG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	23
BshNI	GGYRCC	1 cut(s)	237
BslI	CCNNNNNNNGG	2 cut(s)	332, 335
BsmAI	GTCTC	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	43, 75, 321
BspACI	CCGC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	81
BspLI	GGNNCC	3 cut(s)	147, 184, 239
BspPI	GGATC	2 cut(s)	38, 316
BspT107I	GGYRCC	1 cut(s)	237
BssMI	GATC	3 cut(s)	43, 75, 321
Bst2UI	CCWGG	1 cut(s)	235
Bst6I	CTCTTC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	165
BstDEI	CTNAG	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	303
BstKTI	GATC	3 cut(s)	46, 78, 324
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	3 cut(s)	43, 75, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 418
BstNI	CCWGG	1 cut(s)	235
BstNSI	RCATGY	1 cut(s)	85
BstSCI	CCNGG	1 cut(s)	233
BstSFI	CTRYAG	1 cut(s)	153
BstV1I	GCAGC	1 cut(s)	23
BstXI	CCANNNNNNTGG	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	165
Cfr13I	GGNCC	3 cut(s)	145, 182, 401
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	2 cut(s)	82, 118
CviJI	RGCY	7 cut(s)	14, 37, 163, 194, 278, 295, 412
CviKI_1	RGCY	7 cut(s)	14, 37, 163, 194, 278, 295, 412
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	3 cut(s)	45, 77, 323
DpnII	GATC	3 cut(s)	43, 75, 321
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Eco47I	GGWCC	3 cut(s)	145, 182, 401
EcoO109I	RGGNCCY	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	233
FaeI	CATG	2 cut(s)	85, 121
FaiI	YATR	4 cut(s)	83, 119, 268, 270
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FatI	CATG	2 cut(s)	81, 117
FauNDI	CATATG	1 cut(s)	268
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	12
FspBI	CTAG	2 cut(s)	21, 179
GluI	GCNGC	1 cut(s)	12
Hin1II	CATG	2 cut(s)	85, 121
HinfI	GANTC	1 cut(s)	64
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	3 cut(s)	343, 404, 439
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	1 cut(s)	382
Hpy8I	GTNNAC	3 cut(s)	343, 404, 439
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	1 cut(s)	11
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 418
HpyF3I	CTNAG	1 cut(s)	68
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	2 cut(s)	85, 121
KpnI	GGTACC	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	43, 75, 321
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	1 cut(s)	23
MaeI	CTAG	2 cut(s)	21, 179
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	1 cut(s)	346
MalI	GATC	3 cut(s)	45, 77, 323
MboI	GATC	3 cut(s)	43, 75, 321
MboII	GAAGA	1 cut(s)	202
MluCI	AATT	4 cut(s)	6, 112, 246, 297
MseI	TTAA	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	104
MspR9I	CCNGG	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	235
MwoI	GCNNNNNNNGC	2 cut(s)	164, 418
NdeI	CATATG	1 cut(s)	268
NdeII	GATC	3 cut(s)	43, 75, 321
NlaIII	CATG	2 cut(s)	85, 121
NlaIV	GGNNCC	3 cut(s)	147, 184, 239
NspI	RCATGY	1 cut(s)	85
PfeI	GAWTC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	182
PshBI	ATTAAT	1 cut(s)	395
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	3 cut(s)	147, 184, 239
PspPI	GGNCC	3 cut(s)	145, 182, 401
PspPPI	RGGWCCY	1 cut(s)	182
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SaqAI	TTAA	1 cut(s)	395
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	3 cut(s)	43, 75, 321
Sau96I	GGNCC	3 cut(s)	145, 182, 401
ScrFI	CCNGG	1 cut(s)	235
SetI	ASST	5 cut(s)	16, 165, 331, 348, 403
SfcI	CTRYAG	1 cut(s)	153
SinI	GGWCC	3 cut(s)	145, 182, 401
Sse9I	AATT	4 cut(s)	6, 112, 246, 297
SsiI	CCGC	1 cut(s)	102
SspMI	CTAG	2 cut(s)	21, 179
StyD4I	CCNGG	1 cut(s)	233
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	1 cut(s)	78
TasI	AATT	4 cut(s)	6, 112, 246, 297
TfiI	GAWTC	1 cut(s)	64
Tru1I	TTAA	1 cut(s)	395
Tru9I	TTAA	1 cut(s)	395
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	106, 202
VpaK11BI	GGWCC	3 cut(s)	145, 182, 401
VspI	ATTAAT	1 cut(s)	395
XapI	RAATTY	2 cut(s)	112, 246
XceI	RCATGY	1 cut(s)	85
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XspI	CTAG	2 cut(s)	21, 179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.