Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011124

Physical Location & Seq

Genomic Coordinates Forward (+)

471799 .. 473207

Gene Structure 1409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1007500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTACCTGTTCTTATCTTCTCAACCACGTCCAGATTAAAGGATGGCCCTCCACGAGAAGGATATCCAAGCTTGGAAATCTCAATCCTATTGAAAGCTTCAAGACAAGAAGTGAAAGGCAGCCAAGGCAAGGACTCCTAATTGCACAATGTTCCTTCTGTTTGGTCCAAGTCGGAGCTGCTTCTCCTACCGCTCTGTTGTCATTGAAGCCATCTGATGATATAGATGCAGTTTCAAACATTTTCCGCATCGGTCCGCCGAGCACGCCACAGAACGTCTCAAATCTAATGCACAACTTGGTGCTGGCAGATTTGGACCCTGCAACAGCAAAGCTAGCAATCGGGTTTCTGGGTCCATTTTTTTCGCTGTTCTCGTTTCTCTTCATAATAAGGATAGTCATGTCCTGGTACCCAAAACTTCCGGTTGGGAAGTTCCCGTATGTGGTGGCTTATGCTCCCACGGAGCCGATTCTCGTGGCAACCAGAAAGGTGATCCCGCCGTTGGGCGGTGTGGACGTTACGCCGGTGGTGTGGTTCGGATTGATTAGCTTCCTAAATGAGATATTGGTAGGTCCTCAGGGCCTTCTTGTTCTCCTCTCTCAACAGCTTAGCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YGGT

Protein Analysis

206

Amino Acids

22.36

Weight (kDa)

9.47

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCB3_YggT	PF02325	120 - 189	6.1e-17	CCB3/YggT

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36120
fragaria_vesca	FvH4_4g36740 FvH4_4g36740 FvH4_4g36740 FvH4_4g36740
malus_domestica	MD13G1007500.v1.1 MD16G1000600.v1.1
prunus_persica	Prupe.1G345500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449681 RchiOBHm_Chr4g0446461
rosa_laevigata	RLG00000005659 RLG00000025804
rosa_roxburghii	Rroxscaffold_5G00386900
rosa_rugosa	Rorug04G0371600
rosa_samantha	Rh4AG433200 Rh4BG442400 Rh4CG459700 Rh4DG441100
rosa_wichuraiana	Rw3G001730 Rw4G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	408
AccB1I	GGYRCC	1 cut(s)	408
AccBSI	CCGCTC	1 cut(s)	194
AciI	CCGC	5 cut(s)	192, 247, 257, 497, 507
AclWI	GGATC	1 cut(s)	487
AfaI	GTAC	1 cut(s)	410
AfiI	CCNNNNNNNGG	6 cut(s)	60, 131, 442, 502, 503, 506
AgsI	TTSAA	4 cut(s)	95, 103, 208, 237
AjiI	CACGTC	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	404
AluBI	AGCT	7 cut(s)	73, 99, 179, 334, 549, 607, 615
AluI	AGCT	7 cut(s)	73, 99, 179, 334, 549, 607, 615
Alw21I	GWGCWC	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	487
AoxI	GGCC	2 cut(s)	47, 580
ApeKI	GCWGC	3 cut(s)	121, 179, 612
Asp718I	GGTACC	1 cut(s)	408
AspS9I	GGNCC	7 cut(s)	48, 166, 254, 316, 353, 572, 580
AsuHPI	GGTGA	1 cut(s)	502
AsuNHI	GCTAGC	1 cut(s)	334
AvaII	GGWCC	5 cut(s)	166, 254, 316, 353, 572
AxyI	CCTNAGG	1 cut(s)	576
BanI	GGYRCC	1 cut(s)	408
BauI	CACGAG	2 cut(s)	55, 473
Bbv12I	GWGCWC	1 cut(s)	266
BbvI	GCAGC	2 cut(s)	133, 166
BccI	CCATC	2 cut(s)	39, 220
BceAI	ACGGC	1 cut(s)	484
BciT130I	CCWGG	1 cut(s)	406
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	335
BisI	GCNGC	3 cut(s)	122, 180, 613
BlpI	GCTNAGC	1 cut(s)	608
BlsI	GCNGC	3 cut(s)	123, 181, 614
Bme1390I	CCNGG	1 cut(s)	406
Bme18I	GGWCC	5 cut(s)	166, 254, 316, 353, 572
BmgBI	CACGTC	1 cut(s)	31
BmgT120I	GGNCC	7 cut(s)	48, 166, 254, 316, 353, 572, 580
BmiI	GGNNCC	4 cut(s)	318, 354, 410, 465
BmrFI	CCNGG	1 cut(s)	406
BmsI	GCATC	2 cut(s)	217, 258
BmtI	GCTAGC	1 cut(s)	338
Bpu1102I	GCTNAGC	1 cut(s)	608
BsaJI	CCNNGG	2 cut(s)	125, 459
BsaWI	WCCGGW	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	6 cut(s)	60, 131, 442, 502, 503, 506
Bse118I	RCCGGY	1 cut(s)	523
Bse21I	CCTNAGG	1 cut(s)	576
BseBI	CCWGG	1 cut(s)	406
BseDI	CCNNGG	2 cut(s)	125, 459
BseGI	GGATG	1 cut(s)	50
BseLI	CCNNNNNNNGG	6 cut(s)	60, 131, 442, 502, 503, 506
BseMII	CTCAG	1 cut(s)	590
BseRI	GAGGAG	1 cut(s)	584
BseXI	GCAGC	2 cut(s)	133, 166
BshFI	GGCC	2 cut(s)	49, 582
BshNI	GGYRCC	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	266
BsiSI	CCGG	2 cut(s)	422, 524
BslI	CCNNNNNNNGG	6 cut(s)	60, 131, 442, 502, 503, 506
BsmAI	GTCTC	1 cut(s)	283
BsmBI	CGTCTC	1 cut(s)	283
BsnI	GGCC	2 cut(s)	49, 582
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	1 cut(s)	492
Bsp1720I	GCTNAGC	1 cut(s)	608
BspACI	CCGC	5 cut(s)	192, 247, 257, 497, 507
BspANI	GGCC	2 cut(s)	49, 582
BspCNI	CTCAG	1 cut(s)	589
BspLI	GGNNCC	4 cut(s)	318, 354, 410, 465
BspOI	GCTAGC	1 cut(s)	338
BspPI	GGATC	1 cut(s)	487
BspT107I	GGYRCC	1 cut(s)	408
BsrBI	CCGCTC	1 cut(s)	194
BsrFI	RCCGGY	1 cut(s)	523
BssAI	RCCGGY	1 cut(s)	523
BssECI	CCNNGG	2 cut(s)	125, 459
BssMI	GATC	1 cut(s)	492
BssSI	CACGAG	2 cut(s)	55, 473
BssT1I	CCWWGG	1 cut(s)	125
Bst2BI	CACGAG	2 cut(s)	55, 473
Bst2UI	CCWGG	1 cut(s)	406
Bst6I	CTCTTC	1 cut(s)	386
BstC8I	GCNNGC	3 cut(s)	266, 306, 336
BstDEI	CTNAG	2 cut(s)	576, 608
BstDSI	CCRYGG	1 cut(s)	459
BstF5I	GGATG	1 cut(s)	50
BstKTI	GATC	1 cut(s)	495
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	492
BstMWI	GCNNNNNNNGC	3 cut(s)	127, 265, 335
BstNI	CCWGG	1 cut(s)	406
BstSCI	CCNGG	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	133, 166
Bsu36I	CCTNAGG	1 cut(s)	576
BsuRI	GGCC	2 cut(s)	49, 582
BtgI	CCRYGG	1 cut(s)	459
BtrI	CACGTC	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	50
Cac8I	GCNNGC	3 cut(s)	266, 306, 336
Cfr10I	RCCGGY	1 cut(s)	523
Cfr13I	GGNCC	7 cut(s)	48, 166, 254, 316, 353, 572, 580
CpoI	CGGWCCG	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	409
CspI	CGGWCCG	1 cut(s)	254
CviAII	CATG	1 cut(s)	400
CviQI	GTAC	1 cut(s)	409
DdeI	CTNAG	2 cut(s)	576, 608
DpnI	GATC	1 cut(s)	494
DpnII	GATC	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	386
EarI	CTCTTC	1 cut(s)	386
EciI	GGCGGA	1 cut(s)	246
Eco130I	CCWWGG	1 cut(s)	125
Eco32I	GATATC	1 cut(s)	66
Eco47I	GGWCC	5 cut(s)	166, 254, 316, 353, 572
Eco81I	CCTNAGG	1 cut(s)	576
EcoO109I	RGGNCCY	2 cut(s)	572, 580
EcoRII	CCWGG	1 cut(s)	404
EcoRV	GATATC	1 cut(s)	66
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
Esp3I	CGTCTC	1 cut(s)	283
FaeI	CATG	1 cut(s)	403
FaiI	YATR	5 cut(s)	224, 386, 401, 441, 453
FatI	CATG	1 cut(s)	399
FauI	CCCGC	1 cut(s)	504
Fnu4HI	GCNGC	3 cut(s)	122, 180, 613
FokI	GGATG	1 cut(s)	57
Fsp4HI	GCNGC	3 cut(s)	122, 180, 613
FspBI	CTAG	1 cut(s)	335
GluI	GCNGC	3 cut(s)	122, 180, 613
HaeIII	GGCC	2 cut(s)	49, 582
HapII	CCGG	2 cut(s)	422, 524
Hin1II	CATG	1 cut(s)	403
HindIII	AAGCTT	2 cut(s)	71, 97
HinfI	GANTC	2 cut(s)	135, 469
HpaII	CCGG	2 cut(s)	422, 524
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	3 cut(s)	176, 217, 539
Hpy188III	TCNNGA	2 cut(s)	34, 103
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	3 cut(s)	54, 166, 593
HpyCH4IV	ACGT	3 cut(s)	30, 276, 516
HpyCH4V	TGCA	4 cut(s)	146, 230, 292, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	127, 265, 335
HpyF3I	CTNAG	2 cut(s)	576, 608
HpySE526I	ACGT	3 cut(s)	30, 276, 516
Hsp92II	CATG	1 cut(s)	403
KpnI	GGTACC	1 cut(s)	412
Kzo9I	GATC	1 cut(s)	492
LmnI	GCTCC	3 cut(s)	176, 460, 463
Lsp1109I	GCAGC	2 cut(s)	133, 166
LweI	GCATC	2 cut(s)	217, 258
MaeI	CTAG	1 cut(s)	335
MaeII	ACGT	3 cut(s)	30, 276, 516
MaeIII	GTNAC	1 cut(s)	517
MalI	GATC	1 cut(s)	494
MbiI	CCGCTC	1 cut(s)	194
MboI	GATC	1 cut(s)	492
MboII	GAAGA	2 cut(s)	11, 373
MhlI	GDGCHC	1 cut(s)	266
MluCI	AATT	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	3 cut(s)	61, 585, 605
MseI	TTAA	1 cut(s)	39
MspI	CCGG	2 cut(s)	422, 524
MspR9I	CCNGG	1 cut(s)	406
MvaI	CCWGG	1 cut(s)	406
MwoI	GCNNNNNNNGC	3 cut(s)	127, 265, 335
NdeII	GATC	1 cut(s)	492
NheI	GCTAGC	1 cut(s)	334
NlaIII	CATG	1 cut(s)	403
NlaIV	GGNNCC	4 cut(s)	318, 354, 410, 465
NmeAIII	GCCGAG	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	469
PkrI	GCNGC	3 cut(s)	123, 181, 614
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PpuMI	RGGWCCY	1 cut(s)	572
Psp5II	RGGWCCY	1 cut(s)	572
Psp6I	CCWGG	1 cut(s)	404
PspGI	CCWGG	1 cut(s)	404
PspN4I	GGNNCC	4 cut(s)	318, 354, 410, 465
PspPI	GGNCC	7 cut(s)	48, 166, 254, 316, 353, 572, 580
PspPPI	RGGWCCY	1 cut(s)	572
RsaI	GTAC	1 cut(s)	410
RsaNI	GTAC	1 cut(s)	409
Rsr2I	CGGWCCG	1 cut(s)	254
RsrII	CGGWCCG	1 cut(s)	254
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	3 cut(s)	122, 180, 613
Sau3AI	GATC	1 cut(s)	492
Sau96I	GGNCC	7 cut(s)	48, 166, 254, 316, 353, 572, 580
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	406
SduI	GDGCHC	1 cut(s)	266
SfaNI	GCATC	2 cut(s)	217, 258
SgrAI	CRCCGGYG	1 cut(s)	523
SinI	GGWCC	5 cut(s)	166, 254, 316, 353, 572
Sse9I	AATT	1 cut(s)	141
SsiI	CCGC	5 cut(s)	192, 247, 257, 497, 507
SspMI	CTAG	1 cut(s)	335
StyD4I	CCNGG	1 cut(s)	404
StyI	CCWWGG	1 cut(s)	125
TaiI	ACGT	3 cut(s)	33, 279, 519
TaqII	GACCGA	1 cut(s)	242
TasI	AATT	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	469
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseI	GCWGC	3 cut(s)	121, 179, 612
TspDTI	ATGAA	1 cut(s)	373
TspGWI	ACGGA	1 cut(s)	476
VpaK11BI	GGWCC	5 cut(s)	166, 254, 316, 353, 572
XspI	CTAG	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.