Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011124

Physical Location & Seq

Genomic Coordinates Reverse (-)

32324873 .. 32326076

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G345500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCTACCTGTTCTTATCTTCTCAACCATGTCCAGATTAAAGGATGGCCGTGGCCCTCGAGGATGAGGATATCCAAGCATACAAATCCCACTGTCACTGAAAGCTTCAAGACAACCAGTAGAAGGCATCCAAAGCAAGGGCTCCTAATTGCACAATGTTCCTTATGTTTGGTCCAAGTTGGAGCTTCTCCTCCTAGCGTTGCATTATCACCATTATACTTACCTCCTTCAGGGGAGCCATCTCATATTACGGATGCAGTTTCCAGCATTCTTGGAATTGGTAAGCCAGACACATCACATACTCTCTCAAATTTAATGCACAAGTTGGTTCTTGCAGATTTGGACCCTGCTACAGCAAAGCTTGCTATTGGATTTCTAGGCCCTTTTTTCTCGCTATTTTCTTTTCTGTTTATCATAAGAATCGTCATGTCCTGGTACCCCAAAATTCCAGTGGGGAAGTTCCCTTATGTTGTAGCTTATGCCCCCACAGAGCCACTTCTCGTCCCAACCCGGAAGTTGATACCGCCTTTAGGCGGTGTGGATGTAACCCCTGTGGTCTGGTTTGGATTGATTAGCTTCCTGAATGAGATATTAGTTGGTCCGCAAGGGCTGCTTGTGCTTCTCTCTCAGCAGGTTAATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YGGT

Protein Analysis

215

Amino Acids

23.32

Weight (kDa)

9.51

Isoelectric Point (pI)

43.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36120
fragaria_vesca	FvH4_4g36740 FvH4_4g36740 FvH4_4g36740 FvH4_4g36740
malus_domestica	MD13G1007500.v1.1 MD16G1000600.v1.1
prunus_persica	Prupe.1G345500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449681 RchiOBHm_Chr4g0446461
rosa_laevigata	RLG00000005659 RLG00000025804
rosa_roxburghii	Rroxscaffold_5G00386900
rosa_rugosa	Rorug04G0371600
rosa_samantha	Rh4AG433200 Rh4BG442400 Rh4CG459700 Rh4DG441100
rosa_wichuraiana	Rw3G001730 Rw4G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	58
Acc36I	ACCTGC	1 cut(s)	622
Acc65I	GGTACC	1 cut(s)	435
AccB1I	GGYRCC	1 cut(s)	435
AciI	CCGC	3 cut(s)	524, 534, 602
AcoI	YGGCCR	1 cut(s)	47
AcsI	RAATTY	2 cut(s)	310, 444
AcuI	CTGAAG	1 cut(s)	213
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	5 cut(s)	123, 137, 230, 530, 533
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	431
AluBI	AGCT	5 cut(s)	105, 185, 361, 476, 576
AluI	AGCT	5 cut(s)	105, 185, 361, 476, 576
Ama87I	CYCGRG	1 cut(s)	58
AoxI	GGCC	3 cut(s)	47, 53, 379
ApeKI	GCWGC	1 cut(s)	610
ApoI	RAATTY	2 cut(s)	310, 444
Asp718I	GGTACC	1 cut(s)	435
AspS9I	GGNCC	5 cut(s)	54, 172, 343, 380, 599
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	201
AvaI	CYCGRG	1 cut(s)	58
AvaII	GGWCC	3 cut(s)	172, 343, 599
BanI	GGYRCC	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	597
BccI	CCATC	2 cut(s)	39, 247
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	511
BfaI	CTAG	2 cut(s)	195, 377
BfmI	CTRYAG	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	1 cut(s)	611
BlsI	GCNGC	1 cut(s)	612
Bme1390I	CCNGG	2 cut(s)	433, 511
Bme18I	GGWCC	3 cut(s)	172, 343, 599
BmeT110I	CYCGRG	1 cut(s)	58
BmgT120I	GGNCC	5 cut(s)	54, 172, 343, 380, 599
BmiI	GGNNCC	4 cut(s)	143, 237, 345, 437
BmrFI	CCNGG	2 cut(s)	433, 511
BmsI	GCATC	2 cut(s)	136, 244
BpuMI	CCSGG	1 cut(s)	511
BsaJI	CCNNGG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	5 cut(s)	123, 137, 230, 530, 533
Bse1I	ACTGG	2 cut(s)	117, 449
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	1 cut(s)	50
BseGI	GGATG	5 cut(s)	50, 69, 127, 259, 547
BseLI	CCNNNNNNNGG	5 cut(s)	123, 137, 230, 530, 533
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	2 cut(s)	117, 449
BseRI	GAGGAG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	597
BshFI	GGCC	3 cut(s)	49, 55, 381
BshNI	GGYRCC	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	511
BslFI	GGGAC	1 cut(s)	488
BslI	CCNNNNNNNGG	5 cut(s)	123, 137, 230, 530, 533
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	3 cut(s)	49, 55, 381
BsoBI	CYCGRG	1 cut(s)	58
Bsp1286I	GDGCHC	1 cut(s)	144
BspACI	CCGC	3 cut(s)	524, 534, 602
BspANI	GGCC	3 cut(s)	49, 55, 381
BspCNI	CTCAG	1 cut(s)	640
BspLI	GGNNCC	4 cut(s)	143, 237, 345, 437
BspMI	ACCTGC	1 cut(s)	622
BspT107I	GGYRCC	1 cut(s)	435
BsrI	ACTGG	2 cut(s)	117, 449
BssECI	CCNNGG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	1 cut(s)	94
BstAPI	GCANNNNNTGC	2 cut(s)	362, 610
BstC8I	GCNNGC	1 cut(s)	363
BstDEI	CTNAG	1 cut(s)	627
BstDSI	CCRYGG	1 cut(s)	50
BstENI	CCTNNNNNAGG	1 cut(s)	228
BstF5I	GGATG	5 cut(s)	50, 69, 127, 259, 547
BstMWI	GCNNNNNNNGC	4 cut(s)	133, 362, 610, 616
BstNI	CCWGG	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	431, 509
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	1 cut(s)	597
BsuRI	GGCC	3 cut(s)	49, 55, 381
BtgI	CCRYGG	1 cut(s)	50
BtsCI	GGATG	5 cut(s)	50, 69, 127, 259, 547
BtsIMutI	CAGTG	3 cut(s)	90, 96, 456
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	363
Cfr13I	GGNCC	5 cut(s)	54, 172, 343, 380, 599
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	2 cut(s)	29, 427
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	1 cut(s)	627
EaeI	YGGCCR	1 cut(s)	47
Eco24I	GRGCYC	1 cut(s)	144
Eco32I	GATATC	1 cut(s)	72
Eco47I	GGWCC	3 cut(s)	172, 343, 599
Eco57I	CTGAAG	1 cut(s)	213
Eco88I	CYCGRG	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	380
EcoRII	CCWGG	1 cut(s)	431
EcoRV	GATATC	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	2 cut(s)	32, 430
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	2 cut(s)	28, 426
Fnu4HI	GCNGC	1 cut(s)	611
FokI	GGATG	5 cut(s)	57, 76, 114, 266, 554
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	611
FspBI	CTAG	2 cut(s)	195, 377
GluI	GCNGC	1 cut(s)	611
HaeIII	GGCC	3 cut(s)	49, 55, 381
HapII	CCGG	1 cut(s)	511
Hin1II	CATG	2 cut(s)	32, 430
HindIII	AAGCTT	2 cut(s)	103, 359
HinfI	GANTC	1 cut(s)	420
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	1 cut(s)	201
Hpy188III	TCNNGA	3 cut(s)	34, 109, 580
HpyAV	CCTTC	2 cut(s)	117, 237
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4V	TGCA	5 cut(s)	152, 203, 257, 319, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	133, 362, 610, 616
HpyF3I	CTNAG	1 cut(s)	627
Hsp92II	CATG	2 cut(s)	32, 430
KpnI	GGTACC	1 cut(s)	439
LmnI	GCTCC	3 cut(s)	147, 182, 235
Lsp1109I	GCAGC	1 cut(s)	597
LweI	GCATC	2 cut(s)	136, 244
MaeI	CTAG	2 cut(s)	195, 377
MaeIII	GTNAC	2 cut(s)	94, 544
MboII	GAAGA	1 cut(s)	11
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	4 cut(s)	147, 276, 310, 444
MmeI	TCCRAC	1 cut(s)	160
MnlI	CCTC	5 cut(s)	54, 60, 67, 201, 234
MseI	TTAA	3 cut(s)	39, 314, 636
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	2 cut(s)	433, 511
Mva1269I	GAATGC	1 cut(s)	267
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	4 cut(s)	133, 362, 610, 616
NciI	CCSGG	1 cut(s)	511
NlaIII	CATG	2 cut(s)	32, 430
NlaIV	GGNNCC	4 cut(s)	143, 237, 345, 437
NmuCI	GTSAC	1 cut(s)	94
PaeR7I	CTCGAG	1 cut(s)	58
PctI	GAATGC	1 cut(s)	267
PfeI	GAWTC	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	612
Psp6I	CCWGG	1 cut(s)	431
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	4 cut(s)	143, 237, 345, 437
PspPI	GGNCC	5 cut(s)	54, 172, 343, 380, 599
PspXI	VCTCGAGB	1 cut(s)	58
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SaqAI	TTAA	3 cut(s)	39, 314, 636
SatI	GCNGC	1 cut(s)	611
Sau96I	GGNCC	5 cut(s)	54, 172, 343, 380, 599
ScrFI	CCNGG	2 cut(s)	433, 511
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	9 cut(s)	11, 107, 187, 226, 363, 478, 578, 636, 644
SfaNI	GCATC	2 cut(s)	136, 244
SfcI	CTRYAG	1 cut(s)	351
Sfr274I	CTCGAG	1 cut(s)	58
SinI	GGWCC	3 cut(s)	172, 343, 599
SlaI	CTCGAG	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	58
SmoI	CTYRAG	1 cut(s)	58
Sse9I	AATT	4 cut(s)	147, 276, 310, 444
SsiI	CCGC	3 cut(s)	524, 534, 602
SspMI	CTAG	2 cut(s)	195, 377
StyD4I	CCNGG	2 cut(s)	431, 509
TaaI	ACNGT	1 cut(s)	94
TaqI	TCGA	1 cut(s)	59
TasI	AATT	4 cut(s)	147, 276, 310, 444
TfiI	GAWTC	1 cut(s)	420
Tru1I	TTAA	3 cut(s)	39, 314, 636
Tru9I	TTAA	3 cut(s)	39, 314, 636
TscAI	CASTG	3 cut(s)	97, 103, 456
TseFI	GTSAC	1 cut(s)	94
TseI	GCWGC	1 cut(s)	610
Tsp45I	GTSAC	1 cut(s)	94
TspGWI	ACGGA	1 cut(s)	266
TspRI	CASTG	3 cut(s)	97, 103, 456
VpaK11BI	GGWCC	3 cut(s)	172, 343, 599
XagI	CCTNNNNNAGG	1 cut(s)	228
XapI	RAATTY	2 cut(s)	310, 444
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XhoI	CTCGAG	1 cut(s)	58
XspI	CTAG	2 cut(s)	195, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.