Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0011124

Physical Location & Seq

Genomic Coordinates Reverse (-)

31077 .. 32199

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1000600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGCTACCTGTTCTTATCTCCTCAACCATGTCCAGATTAAAGGATGGCCCTCCAGGATAAGGATATCCAAGCTTGGAAATCTCAGTCCTACTGAAAGCTTCAAGACAAGAAGTAAAAGGCAGCCAAAGCAAGGACTCATAATTGCACAATGTTCCTTCTGTTTGGTCCAAGTCGGAGCTCCTTCTCCTACCACTCTATTGTCATTGAAGCCATCGGATGAGATAGATGCGGTTTCAAACATTTTCCGCACTGGCGGCTCACTGGGCACATCACATAACGTCTCGAATCTAATGCACAACTTGGTGGTGGCAGATTTGGACCCTGCAACCGCGAAGCTAGCAATCGGGTTTCTGGGTCCATTTTTTTCGCTGTTTTCGTTTCTGTTCATAATAAGGATAGTCGTGTCCTGGTACCCAAAACTTCCGGTTGGGAAGTTCCCATATGTGGTGGCTTATGCTCCCACAGAGCCGATTCTCATGGCAACCAGAGAGGTGATCCCGCCGTTAGGCGGTGTGGACGTAACGCCGGTGGTGTGGTTCGGATTGATTAGCTTCCTAAATGAGATATTAGTAGGTCCTCAAGGCCTTCTTGTCCTCCTCTCTCAACAACTTAGTAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

YGGT

Protein Analysis

207

Amino Acids

22.38

Weight (kDa)

9.44

Isoelectric Point (pI)

47.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CCB3_YggT	PF02325	121 - 190	9.7e-16	CCB3/YggT

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011124)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36120
fragaria_vesca	FvH4_4g36740 FvH4_4g36740 FvH4_4g36740 FvH4_4g36740
malus_domestica	MD13G1007500.v1.1 MD16G1000600.v1.1
prunus_persica	Prupe.1G345500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0449681 RchiOBHm_Chr4g0446461
rosa_laevigata	RLG00000005659 RLG00000025804
rosa_roxburghii	Rroxscaffold_5G00386900
rosa_rugosa	Rorug04G0371600
rosa_samantha	Rh4AG433200 Rh4BG442400 Rh4CG459700 Rh4DG441100
rosa_wichuraiana	Rw3G001730 Rw4G037010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	411
AccB1I	GGYRCC	1 cut(s)	411
AccII	CGCG	1 cut(s)	332
AciI	CCGC	6 cut(s)	230, 247, 255, 330, 500, 510
AclWI	GGATC	1 cut(s)	490
AfaI	GTAC	1 cut(s)	413
AfiI	CCNNNNNNNGG	5 cut(s)	60, 131, 445, 506, 509
AgsI	TTSAA	3 cut(s)	103, 208, 237
AjnI	CCWGG	2 cut(s)	53, 407
AluBI	AGCT	6 cut(s)	73, 99, 179, 337, 552, 618
AluI	AGCT	6 cut(s)	73, 99, 179, 337, 552, 618
Alw21I	GWGCWC	1 cut(s)	181
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	1 cut(s)	490
AoxI	GGCC	2 cut(s)	47, 583
ApeKI	GCWGC	1 cut(s)	121
Asp718I	GGTACC	1 cut(s)	411
AspS9I	GGNCC	5 cut(s)	48, 166, 319, 356, 575
AsuHPI	GGTGA	1 cut(s)	505
AsuNHI	GCTAGC	1 cut(s)	337
AvaII	GGWCC	4 cut(s)	166, 319, 356, 575
BaeGI	GKGCMC	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	411
BanII	GRGCYC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	2 cut(s)	39, 220
BceAI	ACGGC	1 cut(s)	487
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BciT130I	CCWGG	2 cut(s)	55, 409
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	338
BisI	GCNGC	2 cut(s)	122, 256
BlsI	GCNGC	2 cut(s)	123, 257
Bme1390I	CCNGG	2 cut(s)	55, 409
Bme18I	GGWCC	4 cut(s)	166, 319, 356, 575
BmgT120I	GGNCC	5 cut(s)	48, 166, 319, 356, 575
BmiI	GGNNCC	3 cut(s)	321, 357, 413
BmrFI	CCNGG	2 cut(s)	55, 409
BmrI	ACTGGG	1 cut(s)	272
BmsI	GCATC	1 cut(s)	217
BmtI	GCTAGC	1 cut(s)	341
BmuI	ACTGGG	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	564
BsaWI	WCCGGW	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	5 cut(s)	60, 131, 445, 506, 509
Bse118I	RCCGGY	1 cut(s)	526
Bse1I	ACTGG	2 cut(s)	256, 267
BseBI	CCWGG	2 cut(s)	55, 409
BseGI	GGATG	2 cut(s)	50, 223
BseLI	CCNNNNNNNGG	5 cut(s)	60, 131, 445, 506, 509
BseMII	CTCAG	1 cut(s)	97
BseNI	ACTGG	2 cut(s)	256, 267
BseRI	GAGGAG	2 cut(s)	11, 587
BseSI	GKGCMC	1 cut(s)	269
BseXI	GCAGC	1 cut(s)	133
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	2 cut(s)	49, 585
BshNI	GGYRCC	1 cut(s)	411
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	425, 527
BslI	CCNNNNNNNGG	5 cut(s)	60, 131, 445, 506, 509
BsmAI	GTCTC	1 cut(s)	286
BsmBI	CGTCTC	1 cut(s)	286
BsnI	GGCC	2 cut(s)	49, 585
Bsp1286I	GDGCHC	2 cut(s)	181, 269
Bsp143I	GATC	1 cut(s)	495
BspACI	CCGC	6 cut(s)	230, 247, 255, 330, 500, 510
BspANI	GGCC	2 cut(s)	49, 585
BspCNI	CTCAG	1 cut(s)	96
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	3 cut(s)	321, 357, 413
BspOI	GCTAGC	1 cut(s)	341
BspPI	GGATC	1 cut(s)	490
BspT107I	GGYRCC	1 cut(s)	411
BsrFI	RCCGGY	1 cut(s)	526
BsrI	ACTGG	2 cut(s)	256, 267
BssAI	RCCGGY	1 cut(s)	526
BssMI	GATC	1 cut(s)	495
Bst2UI	CCWGG	2 cut(s)	55, 409
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	2 cut(s)	83, 611
BstF5I	GGATG	2 cut(s)	50, 223
BstFNI	CGCG	1 cut(s)	332
BstKTI	GATC	1 cut(s)	498
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	495
BstMWI	GCNNNNNNNGC	4 cut(s)	127, 255, 264, 338
BstNI	CCWGG	2 cut(s)	55, 409
BstSCI	CCNGG	2 cut(s)	53, 407
BstSLI	GKGCMC	1 cut(s)	269
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	49, 585
BtsCI	GGATG	2 cut(s)	50, 223
BtsIMutI	CAGTG	2 cut(s)	249, 260
Cac8I	GCNNGC	1 cut(s)	339
Cfr10I	RCCGGY	1 cut(s)	526
Cfr13I	GGNCC	5 cut(s)	48, 166, 319, 356, 575
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	2 cut(s)	29, 478
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	2 cut(s)	83, 611
DpnI	GATC	1 cut(s)	497
DpnII	GATC	1 cut(s)	495
Ecl136II	GAGCTC	1 cut(s)	179
Eco147I	AGGCCT	1 cut(s)	585
Eco24I	GRGCYC	1 cut(s)	181
Eco32I	GATATC	1 cut(s)	66
Eco47I	GGWCC	4 cut(s)	166, 319, 356, 575
Eco53kI	GAGCTC	1 cut(s)	179
EcoICRI	GAGCTC	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	53, 407
EcoRV	GATATC	1 cut(s)	66
EcoT38I	GRGCYC	1 cut(s)	181
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	2 cut(s)	32, 481
FaiI	YATR	8 cut(s)	30, 140, 276, 389, 442, 444, 456, 479
FalI	AAGNNNNNCTT	2 cut(s)	573, 605
FatI	CATG	2 cut(s)	28, 477
FauI	CCCGC	1 cut(s)	507
FauNDI	CATATG	1 cut(s)	442
Fnu4HI	GCNGC	2 cut(s)	122, 256
FokI	GGATG	2 cut(s)	57, 230
FriOI	GRGCYC	1 cut(s)	181
Fsp4HI	GCNGC	2 cut(s)	122, 256
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	2 cut(s)	122, 256
GsuI	CTGGAG	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	49, 585
HapII	CCGG	2 cut(s)	425, 527
Hin1II	CATG	2 cut(s)	32, 481
HindIII	AAGCTT	2 cut(s)	71, 97
HinfI	GANTC	3 cut(s)	135, 286, 472
HpaII	CCGG	2 cut(s)	425, 527
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	517
Hpy188I	TCNGA	3 cut(s)	176, 217, 542
Hpy188III	TCNNGA	3 cut(s)	34, 103, 283
Hpy8I	GTNNAC	1 cut(s)	517
HpyAV	CCTTC	3 cut(s)	166, 192, 596
HpyCH4IV	ACGT	2 cut(s)	279, 519
HpyCH4V	TGCA	3 cut(s)	146, 295, 326
HpyF10VI	GCNNNNNNNGC	4 cut(s)	127, 255, 264, 338
HpyF3I	CTNAG	2 cut(s)	83, 611
HpySE526I	ACGT	2 cut(s)	279, 519
Hsp92II	CATG	2 cut(s)	32, 481
KpnI	GGTACC	1 cut(s)	415
Kzo9I	GATC	1 cut(s)	495
LmnI	GCTCC	3 cut(s)	176, 184, 463
Lsp1109I	GCAGC	1 cut(s)	133
LweI	GCATC	1 cut(s)	217
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	2 cut(s)	279, 519
MaeIII	GTNAC	1 cut(s)	520
MalI	GATC	1 cut(s)	497
MboI	GATC	1 cut(s)	495
MhlI	GDGCHC	2 cut(s)	181, 269
MluCI	AATT	1 cut(s)	141
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	154
MnlI	CCTC	6 cut(s)	32, 61, 484, 588, 605, 608
MseI	TTAA	1 cut(s)	39
MspI	CCGG	2 cut(s)	425, 527
MspR9I	CCNGG	2 cut(s)	55, 409
MvaI	CCWGG	2 cut(s)	55, 409
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	4 cut(s)	127, 255, 264, 338
NdeI	CATATG	1 cut(s)	442
NdeII	GATC	1 cut(s)	495
NheI	GCTAGC	1 cut(s)	337
NlaIII	CATG	2 cut(s)	32, 481
NlaIV	GGNNCC	3 cut(s)	321, 357, 413
PceI	AGGCCT	1 cut(s)	585
PcsI	WCGNNNNNNNCGW	1 cut(s)	374
PfeI	GAWTC	2 cut(s)	286, 472
PfoI	TCCNGGA	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	123, 257
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PpuMI	RGGWCCY	1 cut(s)	575
Psp124BI	GAGCTC	1 cut(s)	181
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	2 cut(s)	53, 407
PspGI	CCWGG	2 cut(s)	53, 407
PspN4I	GGNNCC	3 cut(s)	321, 357, 413
PspPI	GGNCC	5 cut(s)	48, 166, 319, 356, 575
PspPPI	RGGWCCY	1 cut(s)	575
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
SacI	GAGCTC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	2 cut(s)	122, 256
Sau3AI	GATC	1 cut(s)	495
Sau96I	GGNCC	5 cut(s)	48, 166, 319, 356, 575
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	2 cut(s)	55, 409
SduI	GDGCHC	2 cut(s)	181, 269
SfaNI	GCATC	1 cut(s)	217
SgrAI	CRCCGGYG	1 cut(s)	526
SinI	GGWCC	4 cut(s)	166, 319, 356, 575
SmlI	CTYRAG	1 cut(s)	579
SmoI	CTYRAG	1 cut(s)	579
Sse9I	AATT	1 cut(s)	141
SseBI	AGGCCT	1 cut(s)	585
SsiI	CCGC	6 cut(s)	230, 247, 255, 330, 500, 510
SspMI	CTAG	1 cut(s)	338
SstI	GAGCTC	1 cut(s)	181
StuI	AGGCCT	1 cut(s)	585
StyD4I	CCNGG	2 cut(s)	53, 407
TaiI	ACGT	2 cut(s)	282, 522
TaqI	TCGA	1 cut(s)	284
TasI	AATT	1 cut(s)	141
TauI	GCSGC	1 cut(s)	258
TfiI	GAWTC	2 cut(s)	286, 472
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	2 cut(s)	256, 267
TseI	GCWGC	1 cut(s)	121
TspDTI	ATGAA	1 cut(s)	376
TspRI	CASTG	2 cut(s)	256, 267
VpaK11BI	GGWCC	4 cut(s)	166, 319, 356, 575
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.