AT5G37710

Lipase 3 N-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007190
Physical Location & Seq
Forward (+)
14978566 .. 14981620
3055 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G37710.2

Sequence Viewer

Length: 1320 bp
ATGTCAGTAGCTTGTGGACTAGAATGTGTCTTCTGTGTAGGATTCAGTAGATGGGCATGGAAACGATGCACACACGTAGGCTCAGACGATAGCGCCACGTGGACATCAGCAACACCGGAAGAATTCGAACCAATCCCAAGAATCAGCCGAGTAATCCTCGCCGTCTACGAACCCGATCTCAGAAACCCTAAAATCTCACCTTCGTTAGGAACTTTCGATCTAAACCCTGAATGGGTCATCAAACGTGTGACACACGAAAAAACCCAAGGAAGATCTCCACCGTACATTATCTACATAGATCACGACCACCGTGAGATTGTTTTAGCGATTCGTGGCTTGAACTTAGCTAAAGAGAGTGATTACAAGATTCTGTTAGATAACAAATTAGGTCAGAAAATGCTTGGTGGTGGTTATGTGCATCGTGGGTTGTTGAAATCTGCGGCTTGGGTTTTGAATCAAGAATCTGAGACTCTTTGGAGAGTTTGGGAAGAGAATGGTAGAGAGTATGATTTGGTTTTTGCTGGTCATTCTTTGGGTTCTGGTGTTGCGGCGTTGATGGCGGTTTTGGTTGTTAATACTCCGGCGATGATTGGTGATATTCCGAGGAATAAGGTTCGATGTTTTGCTTTGGCTCCGGCGAGATGTATGTCGCTTAATCTCGCCGTTAAGTATGCTGACGTCATCTCCTCCGTCATTTTGCAGGATGATTTTTTACCGAGAACAGCGACACCATTAGAGGATATATTCAAGTCTGTATTCTGCTTGCCGTGCTTGTTGTTTCTAGTTTGTCTGAGGGATACATTTATACCGGAAGGTCGGAAACTAAGAGATCCTAGAAGGCTTTATGCTCCTGGTCGAATTTATCATATCGTTGAGCGGAAATTTTGCAGATGTGGAAGGTTTCCTCCCGAAGTGAGAACCGCGATTCCCGTTGATGGTAGATTTGAGCATATAGTATTATCATCGAATGCAACATCGGATCATGCGATTCTATGGATAGAAAGAGAAGCAGAAAAGGCATTGCAGATATTGAGAGAGAAGAGTTCAGAGACAGTGGTAACAATGGCACCAAAAGAGAAGAGAATGGAGAGGTTAAGTACTTTAGAGAAAGAGCACAAAGATGCGTTGGAGAGAGCCGTGAGTCTTAATATCCCACACGCAGTGTCCACCGCGGAAGAAGAAGAAGAATGCAACAATGGAGAAGCATCCGCGGAGTTGAAAACAAAGAAGAAGAATTGGGATGAAGTTGTGGACAAGCTTTTCCATCGAAGCAATTCAGGAGAATTCGTTCTCAACGATAACGTTGTTCCTGAAAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase3_N Lipase_3

Protein Analysis

439

Amino Acids

49.74

Weight (kDa)

6.66

Isoelectric Point (pI)

51.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase3_N PF03893 7 - 73 1.5e-23 Lipase 3 N-terminal region
Lipase_3 PF01764 107 - 243 8.7e-22 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 681
AccB1I GGYRCC 1 cut(s) 1066
AccBSI CCGCTC 1 cut(s) 877
AccI GTMKAC 1 cut(s) 165
AccII CGCG 3 cut(s) 923, 1172, 1211
AciI CCGC 9 cut(s) 440, 548, 560, 877, 921, 1170, 1172, 1209, 1211
AclI AACGTT 1 cut(s) 1302
AclWI GGATC 2 cut(s) 824, 987
AcsI RAATTY 4 cut(s) 122, 858, 881, 1283
AcvI CACGTG 1 cut(s) 99
AcyI GRCGYC 1 cut(s) 678
AdeI CACNNNGTG 1 cut(s) 1162
AfaI GTAC 2 cut(s) 284, 1099
AfiI CCNNNNNNNGG 3 cut(s) 206, 232, 935
AflIII ACRYGT 2 cut(s) 73, 244
AgsI TTSAA 5 cut(s) 340, 433, 454, 748, 1219
AjnI CCWGG 1 cut(s) 850
AloI GAACNNNNNNTCC 4 cut(s) 910, 942, 1272, 1304
AluBI AGCT 3 cut(s) 11, 347, 1258
AluI AGCT 3 cut(s) 11, 347, 1258
Alw21I GWGCWC 1 cut(s) 1116
Alw26I GTCTC 2 cut(s) 461, 1043
AlwI GGATC 2 cut(s) 824, 987
ApoI RAATTY 4 cut(s) 122, 858, 881, 1283
Asp700I GAANNNNTTC 2 cut(s) 1273, 1287
AspLEI GCGC 1 cut(s) 95
AsuHPI GGTGA 2 cut(s) 189, 605
AsuII TTCGAA 1 cut(s) 126
BanI GGYRCC 1 cut(s) 1066
BbrPI CACGTG 1 cut(s) 99
BbsI GAAGAC 1 cut(s) 22
Bbv12I GWGCWC 1 cut(s) 1116
BccI CCATC 4 cut(s) 45, 550, 929, 1272
BceAI ACGGC 4 cut(s) 146, 647, 751, 1121
BciT130I CCWGG 1 cut(s) 852
BciVI GTATCC 1 cut(s) 790
BcoDI GTCTC 2 cut(s) 461, 1043
BfaI CTAG 3 cut(s) 20, 782, 834
BfoI RGCGCY 1 cut(s) 96
BfuI GTATCC 1 cut(s) 790
BglII AGATCT 1 cut(s) 272
BisI GCNGC 2 cut(s) 441, 549
BlsI GCNGC 2 cut(s) 442, 550
BmcAI AGTACT 1 cut(s) 1099
Bme1390I CCNGG 1 cut(s) 852
BmiI GGNNCC 2 cut(s) 633, 1068
BmrFI CCNGG 1 cut(s) 852
BmsI GCATC 4 cut(s) 56, 427, 1111, 1214
BpiI GAAGAC 1 cut(s) 22
BplI GAGNNNNNCTC 2 cut(s) 141, 173
Bpu14I TTCGAA 1 cut(s) 126
BsaAI YACGTR 2 cut(s) 76, 99
BsaHI GRCGYC 1 cut(s) 678
BsaJI CCNNGG 4 cut(s) 265, 602, 1170, 1209
BsaWI WCCGGW 2 cut(s) 115, 808
BsaXI ACNNNNNCTCC 4 cut(s) 668, 698, 1272, 1302
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 232, 935
Bse3DI GCAATG 1 cut(s) 1019
BseBI CCWGG 1 cut(s) 852
BseDI CCNNGG 4 cut(s) 265, 602, 1170, 1209
BseGI GGATG 3 cut(s) 709, 1205, 1246
BseLI CCNNNNNNNGG 3 cut(s) 206, 232, 935
BseMI GCAATG 1 cut(s) 1019
BseMII CTCAG 4 cut(s) 96, 193, 456, 782
BseRI GAGGAG 1 cut(s) 676
Bsh1236I CGCG 3 cut(s) 923, 1172, 1211
BshNI GGYRCC 1 cut(s) 1066
BsiHKAI GWGCWC 1 cut(s) 1116
BsiSI CCGG 4 cut(s) 116, 581, 635, 809
BslI CCNNNNNNNGG 3 cut(s) 206, 232, 935
BsmAI GTCTC 2 cut(s) 461, 1043
BsmI GAATGC 2 cut(s) 973, 1193
Bsp119I TTCGAA 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 1116
Bsp143I GATC 6 cut(s) 175, 217, 272, 298, 829, 979
BspACI CCGC 9 cut(s) 440, 548, 560, 877, 921, 1170, 1172, 1209, 1211
BspCNI CTCAG 4 cut(s) 95, 192, 457, 783
BspFNI CGCG 3 cut(s) 923, 1172, 1211
BspLI GGNNCC 2 cut(s) 633, 1068
BspPI GGATC 2 cut(s) 824, 987
BspT104I TTCGAA 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 1066
BsrBI CCGCTC 1 cut(s) 877
BsrDI GCAATG 1 cut(s) 1019
BssECI CCNNGG 4 cut(s) 265, 602, 1170, 1209
BssMI GATC 6 cut(s) 175, 217, 272, 298, 829, 979
BssNI GRCGYC 1 cut(s) 678
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 852
Bst4CI ACNGT 3 cut(s) 282, 311, 1054
Bst6I CTCTTC 3 cut(s) 483, 1034, 1073
BstACI GRCGYC 1 cut(s) 678
BstBAI YACGTR 2 cut(s) 76, 99
BstBI TTCGAA 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 764
BstDEI CTNAG 6 cut(s) 82, 179, 343, 465, 791, 824
BstDSI CCRYGG 2 cut(s) 1170, 1209
BstENI CCTNNNNNAGG 1 cut(s) 204
BstF5I GGATG 3 cut(s) 709, 1205, 1246
BstFNI CGCG 3 cut(s) 923, 1172, 1211
BstH2I RGCGCY 1 cut(s) 96
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 6 cut(s) 178, 220, 275, 301, 832, 982
BstMAI GTCTC 2 cut(s) 461, 1043
BstMBI GATC 6 cut(s) 175, 217, 272, 298, 829, 979
BstMWI GCNNNNNNNGC 3 cut(s) 557, 768, 1016
BstNI CCWGG 1 cut(s) 852
BstSCI CCNGG 1 cut(s) 850
BstUI CGCG 3 cut(s) 923, 1172, 1211
BstV2I GAAGAC 1 cut(s) 22
BstX2I RGATCY 2 cut(s) 272, 829
BstYI RGATCY 2 cut(s) 272, 829
BsuI GTATCC 1 cut(s) 790
BtgI CCRYGG 2 cut(s) 1170, 1209
BtgZI GCGATG 1 cut(s) 599
BtsCI GGATG 3 cut(s) 709, 1205, 1246
BtsI GCAGTG 1 cut(s) 1167
BtsIMutI CAGTG 2 cut(s) 1059, 1167
Cac8I GCNNGC 1 cut(s) 764
CfoI GCGC 1 cut(s) 95
Cfr42I CCGCGG 2 cut(s) 1173, 1212
Csp6I GTAC 2 cut(s) 283, 1098
CviAII CATG 2 cut(s) 57, 983
CviQI GTAC 2 cut(s) 283, 1098
DdeI CTNAG 6 cut(s) 82, 179, 343, 465, 791, 824
DpnI GATC 6 cut(s) 177, 219, 274, 300, 831, 981
DpnII GATC 6 cut(s) 175, 217, 272, 298, 829, 979
DraIII CACNNNGTG 1 cut(s) 1162
Eam1104I CTCTTC 3 cut(s) 483, 1034, 1073
EarI CTCTTC 3 cut(s) 483, 1034, 1073
Eco130I CCWWGG 1 cut(s) 265
Eco72I CACGTG 1 cut(s) 99
EcoNI CCTNNNNNAGG 1 cut(s) 204
EcoRI GAATTC 2 cut(s) 122, 1283
EcoRII CCWGG 1 cut(s) 850
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 2 cut(s) 60, 986
FatI CATG 2 cut(s) 56, 982
FblI GTMKAC 1 cut(s) 165
Fnu4HI GCNGC 2 cut(s) 441, 549
FokI GGATG 3 cut(s) 716, 1192, 1253
Fsp4HI GCNGC 2 cut(s) 441, 549
FspBI CTAG 3 cut(s) 20, 782, 834
GlaI GCGC 1 cut(s) 94
GluI GCNGC 2 cut(s) 441, 549
HaeII RGCGCY 1 cut(s) 96
HapII CCGG 4 cut(s) 116, 581, 635, 809
HhaI GCGC 1 cut(s) 95
Hin1I GRCGYC 1 cut(s) 678
Hin1II CATG 2 cut(s) 60, 986
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HindIII AAGCTT 1 cut(s) 1256
HpaII CCGG 4 cut(s) 116, 581, 635, 809
HphI GGTGA 2 cut(s) 189, 605
Hpy166II GTNNAC 5 cut(s) 17, 102, 166, 1167, 1252
Hpy188I TCNGA 9 cut(s) 85, 182, 393, 466, 603, 792, 819, 979, 1048
Hpy188III TCNNGA 5 cut(s) 302, 458, 908, 1278, 1310
Hpy8I GTNNAC 5 cut(s) 17, 102, 166, 1167, 1252
HpyAV CCTTC 4 cut(s) 210, 806, 831, 891
HpyCH4III ACNGT 3 cut(s) 282, 311, 1054
HpyCH4IV ACGT 5 cut(s) 75, 98, 244, 678, 1302
HpyCH4V TGCA 7 cut(s) 69, 418, 700, 888, 971, 1024, 1191
HpyF10VI GCNNNNNNNGC 3 cut(s) 557, 768, 1016
HpyF3I CTNAG 6 cut(s) 82, 179, 343, 465, 791, 824
HpySE526I ACGT 5 cut(s) 75, 98, 244, 678, 1302
Hsp92I GRCGYC 1 cut(s) 678
Hsp92II CATG 2 cut(s) 60, 986
HspAI GCGC 1 cut(s) 93
KspI CCGCGG 2 cut(s) 1173, 1212
Kzo9I GATC 6 cut(s) 175, 217, 272, 298, 829, 979
LmnI GCTCC 2 cut(s) 637, 853
LweI GCATC 4 cut(s) 56, 427, 1111, 1214
MaeI CTAG 3 cut(s) 20, 782, 834
MaeII ACGT 5 cut(s) 75, 98, 244, 678, 1302
MaeIII GTNAC 2 cut(s) 247, 1057
MalI GATC 6 cut(s) 177, 219, 274, 300, 831, 981
MbiI CCGCTC 1 cut(s) 877
MboI GATC 6 cut(s) 175, 217, 272, 298, 829, 979
MflI RGATCY 2 cut(s) 272, 829
MhlI GDGCHC 1 cut(s) 1116
MluCI AATT 7 cut(s) 122, 383, 858, 881, 1234, 1273, 1283
MlyI GAGTC 2 cut(s) 463, 1150
MmeI TCCRAC 2 cut(s) 797, 1107
MnlI CCTC 7 cut(s) 167, 597, 697, 730, 786, 915, 1083
MroXI GAANNNNTTC 2 cut(s) 1273, 1287
MseI TTAA 5 cut(s) 573, 654, 666, 1094, 1146
MslI CAYNNNNRTG 1 cut(s) 1119
MspA1I CMGCKG 2 cut(s) 1172, 1211
MspI CCGG 4 cut(s) 116, 581, 635, 809
MspR9I CCNGG 1 cut(s) 852
Mva1269I GAATGC 2 cut(s) 973, 1193
MvaI CCWGG 1 cut(s) 852
MvnI CGCG 3 cut(s) 923, 1172, 1211
MwoI GCNNNNNNNGC 3 cut(s) 557, 768, 1016
NdeII GATC 6 cut(s) 175, 217, 272, 298, 829, 979
NlaIII CATG 2 cut(s) 60, 986
NlaIV GGNNCC 2 cut(s) 633, 1068
NmeAIII GCCGAG 1 cut(s) 173
NmuCI GTSAC 1 cut(s) 247
NspV TTCGAA 1 cut(s) 126
PcsI WCGNNNNNNNCGW 3 cut(s) 165, 983, 1293
PctI GAATGC 2 cut(s) 973, 1193
PdmI GAANNNNTTC 2 cut(s) 1273, 1287
PfeI GAWTC 8 cut(s) 42, 141, 328, 367, 454, 461, 925, 988
PkrI GCNGC 2 cut(s) 442, 550
PleI GAGTC 2 cut(s) 463, 1149
PmaCI CACGTG 1 cut(s) 99
PmlI CACGTG 1 cut(s) 99
PpsI GAGTC 2 cut(s) 463, 1149
Ppu21I YACGTR 2 cut(s) 76, 99
Psp1406I AACGTT 1 cut(s) 1302
Psp6I CCWGG 1 cut(s) 850
PspCI CACGTG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 850
PspN4I GGNNCC 2 cut(s) 633, 1068
PsuI RGATCY 2 cut(s) 272, 829
RsaI GTAC 2 cut(s) 284, 1099
RsaNI GTAC 2 cut(s) 283, 1098
RseI CAYNNNNRTG 1 cut(s) 1119
SacII CCGCGG 2 cut(s) 1173, 1212
SaqAI TTAA 5 cut(s) 573, 654, 666, 1094, 1146
SatI GCNGC 2 cut(s) 441, 549
Sau3AI GATC 6 cut(s) 175, 217, 272, 298, 829, 979
ScaI AGTACT 1 cut(s) 1099
SchI GAGTC 2 cut(s) 463, 1150
ScrFI CCNGG 1 cut(s) 852
SduI GDGCHC 1 cut(s) 1116
SfaNI GCATC 4 cut(s) 56, 427, 1111, 1214
Sfr303I CCGCGG 2 cut(s) 1173, 1212
SfuI TTCGAA 1 cut(s) 126
SgrBI CCGCGG 2 cut(s) 1173, 1212
SmiMI CAYNNNNRTG 1 cut(s) 1119
Sse9I AATT 7 cut(s) 122, 383, 858, 881, 1234, 1273, 1283
SsiI CCGC 9 cut(s) 440, 548, 560, 877, 921, 1170, 1172, 1209, 1211
SspMI CTAG 3 cut(s) 20, 782, 834
StyD4I CCNGG 1 cut(s) 850
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 3 cut(s) 282, 311, 1054
TaiI ACGT 5 cut(s) 78, 101, 247, 681, 1305
TaqI TCGA 6 cut(s) 126, 216, 616, 856, 965, 1267
TasI AATT 7 cut(s) 122, 383, 858, 881, 1234, 1273, 1283
TatI WGTACW 1 cut(s) 1097
TauI GCSGC 2 cut(s) 443, 551
TfiI GAWTC 8 cut(s) 42, 141, 328, 367, 454, 461, 925, 988
Tru1I TTAA 5 cut(s) 573, 654, 666, 1094, 1146
Tru9I TTAA 5 cut(s) 573, 654, 666, 1094, 1146
TscAI CASTG 2 cut(s) 1059, 1167
TseFI GTSAC 1 cut(s) 247
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 1257
TspGWI ACGGA 1 cut(s) 679
TspRI CASTG 2 cut(s) 1059, 1167
XagI CCTNNNNNAGG 1 cut(s) 204
XapI RAATTY 4 cut(s) 122, 858, 881, 1283
XmiI GTMKAC 1 cut(s) 165
XmnI GAANNNNTTC 2 cut(s) 1273, 1287
XspI CTAG 3 cut(s) 20, 782, 834
ZraI GACGTC 1 cut(s) 679
ZrmI AGTACT 1 cut(s) 1099
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.