MD09G1275900.v1.1

Lipase 3 N-terminal region

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
35335300 .. 35340094
4795 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1275900.v1.1.491

Sequence Viewer

Length: 1356 bp
ATGTCGGTGGCGTGTGGCATGGAGTGCGTGGTCGTGTTGGGCTGTATGCGCTGGGTGTGGCGGCGCTGCACCTACATCGGCTCCAACGACAGCGCCACCTGGTCCTCCGCCACCCCCGACGAGTTCGACCCCGTCCCCCGCATCTGCCGCCTAATCCTCGCCGTCTACGAGCCCGATCTTCACAACCCCCACTTCATCCCCACCGTCGGATTCCGCCCCAACCCCGACTGGGTCGTCAAGCGCGTCACTTACGAACAAACCCTTGGACACGCGCCGCCCTACCTCATCTACGTCGACCACGACCACAAGGAGCTCGTCCTCGCCATTCGCGGCCTCAATTTGGTCAAAGAGAGCGACTACAAGCTCCTGCTCGATAACAAGCTCGGAATGCAGATGTTCGACGGAGGCTATGTCCACCACGGCCTCTTGAAGTCGGCGATTTGGCTGCTCAAAGAAGAGGGCGAGACATTGAAGCGGCTCTGGCTGGAAAACGGGTCCAATTACGATATGGTGTTTGCGGGTCACTCTTTGGGGTCTGGTGTGGCGACGCTGCTGACTGTGATTGTTGTCAACCACCGGGACTGGCTTGGCGGGATCCCTCGGAGAAAGGTGAGGTGCTACGCGCTTGCTCCGGCGCGTTGTATGTCGTTAAATTTGGCCGTCAAGTATGCCGATGTTATATACTCGGTGGTTCTGCAGGATGATTTCTTGCCAAGAACTGCAACCCCCTTGGAAGATATTTTCAAGTCAATCTTTTGCTTGCCCTGCTTGATGTTTTTGGTTTGTTTGAGGGATACTTTCATACCAGAAGGTAGGAAGCTTAGGGATCCTAGAAGGCTTTATGCACCCGGGCGGATGTATCATATCGTAGAGCGCAAATTTTGCAGATGTGGGAGGTTTCCTCCAGAGGTCCGAACTGCCATTCCAGTTGATGGGAGATTTGAACATATTGTCTTGTCATGTAATGCCACATCTGATCATGGAATTATCTGGATAGAAAGGGAAGCAGAGAAGGCTTTATTACGAATGAAGGAAGAAAGTAGTTCTGAGACTGTAACAACTGCTCCAAAAATACAAAAACTTGAGAGGTTGCAGACCATTGAAAAAGAACACAAAGATGCATTGGAAAGAGCTGTCAGTTTGAATGTGCCTCATGCTGTAACATCCAACGAGGAAGCCCCCGAAGACCAAAAACCGGAGAAGGCTCCAGAGATTGAAAATCAGAGCGAAGATGCTGCAGATACAAAGTTGAAGTCCACTGGTGGAAGGGCAAGGTGGGATGATTTGGTTGAAAAGCTTTTCAAGAAAGAATCTGGGGATGTACTGCTAACACGAGATTCAAATCCCCCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

452

Amino Acids

51.29

Weight (kDa)

6.42

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase3_N PF03893 7 - 68 5.5e-19 Lipase 3 N-terminal region
Lipase_3 PF01764 106 - 242 7.6e-24 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
AccB7I CCANNNNNTGG 1 cut(s) 932
AccI GTMKAC 2 cut(s) 165, 294
AccII CGCG 5 cut(s) 243, 272, 330, 623, 637
AclWI GGATC 4 cut(s) 589, 602, 821, 834
AcoI YGGCCR 1 cut(s) 657
AcsI RAATTY 2 cut(s) 652, 878
AfaI GTAC 1 cut(s) 1323
AfiI CCNNNNNNNGG 5 cut(s) 206, 229, 340, 932, 1195
AjnI CCWGG 1 cut(s) 98
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AloI GAACNNNNNNTCC 2 cut(s) 907, 939
AluBI AGCT 6 cut(s) 313, 364, 382, 820, 1133, 1297
AluI AGCT 6 cut(s) 313, 364, 382, 820, 1133, 1297
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 458, 1043
AlwI GGATC 4 cut(s) 589, 602, 821, 834
Ama87I CYCGRG 1 cut(s) 848
AoxI GGCC 3 cut(s) 331, 421, 657
ApeKI GCWGC 4 cut(s) 66, 445, 550, 1235
ApoI RAATTY 2 cut(s) 652, 878
ArsI GACNNNNNNTTYG 2 cut(s) 1238, 1270
AspLEI GCGC 8 cut(s) 51, 66, 95, 243, 274, 625, 637, 876
AspS9I GGNCC 3 cut(s) 102, 495, 910
AsuC2I CCSGG 3 cut(s) 578, 849, 850
AsuHPI GGTGA 1 cut(s) 622
AvaI CYCGRG 1 cut(s) 848
AvaII GGWCC 3 cut(s) 102, 495, 910
BamHI GGATCC 2 cut(s) 594, 826
BanII GRGCYC 2 cut(s) 174, 315
BauI CACGAG 1 cut(s) 1332
BbsI GAAGAC 1 cut(s) 1191
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 4 cut(s) 53, 432, 537, 1222
BccI CCATC 1 cut(s) 926
BceAI ACGGC 3 cut(s) 146, 436, 644
BcgI CGANNNNNNTGC 6 cut(s) 58, 92, 427, 461, 1217, 1251
BciT130I CCWGG 1 cut(s) 100
BciVI GTATCC 1 cut(s) 787
BclI TGATCA 1 cut(s) 976
BcnI CCSGG 3 cut(s) 578, 849, 850
BcoDI GTCTC 2 cut(s) 458, 1043
BfaI CTAG 1 cut(s) 831
BfmI CTRYAG 2 cut(s) 695, 1236
BfoI RGCGCY 2 cut(s) 67, 96
BfuI GTATCC 1 cut(s) 787
BisI GCNGC 9 cut(s) 62, 67, 148, 275, 331, 446, 476, 551, 1236
BlsI GCNGC 9 cut(s) 63, 68, 149, 276, 332, 447, 477, 552, 1237
Bme1390I CCNGG 4 cut(s) 100, 578, 849, 850
Bme18I GGWCC 3 cut(s) 102, 495, 910
BmeT110I CYCGRG 1 cut(s) 848
BmgT120I GGNCC 3 cut(s) 102, 495, 910
BmiI GGNNCC 5 cut(s) 82, 496, 596, 828, 1206
BmrFI CCNGG 4 cut(s) 100, 578, 849, 850
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 3 cut(s) 150, 1108, 1222
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 1191
BplI GAGNNNNNCTC 2 cut(s) 886, 918
BpmI CTGGAG 2 cut(s) 888, 1191
Bpu10I CCTNAGC 1 cut(s) 821
BpuEI CTTGAG 1 cut(s) 1103
BpuMI CCSGG 3 cut(s) 578, 849, 850
BsaBI GATNNNNATC 1 cut(s) 1341
BsaJI CCNNGG 5 cut(s) 262, 418, 599, 729, 848
BsaWI WCCGGW 1 cut(s) 1195
BsaXI ACNNNNNCTCC 6 cut(s) 65, 95, 396, 426, 1048, 1078
Bsc4I CCNNNNNNNGG 5 cut(s) 206, 229, 340, 932, 1195
Bse1I ACTGG 4 cut(s) 233, 587, 926, 1264
Bse8I GATNNNNATC 1 cut(s) 1341
BseBI CCWGG 1 cut(s) 100
BseDI CCNNGG 5 cut(s) 262, 418, 599, 729, 848
BseGI GGATG 6 cut(s) 195, 706, 861, 1163, 1285, 1324
BseJI GATNNNNATC 1 cut(s) 1341
BseLI CCNNNNNNNGG 5 cut(s) 206, 229, 340, 932, 1195
BseMII CTCAG 1 cut(s) 1038
BseNI ACTGG 4 cut(s) 233, 587, 926, 1264
BseXI GCAGC 4 cut(s) 53, 432, 537, 1222
BseYI CCCAGC 1 cut(s) 51
BsgI GTGCAG 1 cut(s) 52
Bsh1236I CGCG 5 cut(s) 243, 272, 330, 623, 637
BshFI GGCC 3 cut(s) 333, 423, 659
BsiHKAI GWGCWC 1 cut(s) 315
BsiHKCI CYCGRG 1 cut(s) 848
BsiSI CCGG 4 cut(s) 577, 632, 849, 1196
BslFI GGGAC 2 cut(s) 119, 593
BslI CCNNNNNNNGG 5 cut(s) 206, 229, 340, 932, 1195
BsmAI GTCTC 2 cut(s) 458, 1043
BsmFI GGGAC 2 cut(s) 119, 593
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 3 cut(s) 333, 423, 659
BsoBI CYCGRG 1 cut(s) 848
Bsp1286I GDGCHC 2 cut(s) 174, 315
Bsp143I GATC 4 cut(s) 175, 594, 826, 976
BspANI GGCC 3 cut(s) 333, 423, 659
BspCNI CTCAG 1 cut(s) 1039
BspFNI CGCG 5 cut(s) 243, 272, 330, 623, 637
BspLI GGNNCC 5 cut(s) 82, 496, 596, 828, 1206
BspMAI CTGCAG 2 cut(s) 699, 1240
BspPI GGATC 4 cut(s) 589, 602, 821, 834
BsrI ACTGG 4 cut(s) 233, 587, 926, 1264
BssECI CCNNGG 5 cut(s) 262, 418, 599, 729, 848
BssMI GATC 4 cut(s) 175, 594, 826, 976
BssSI CACGAG 1 cut(s) 1332
BssT1I CCWWGG 2 cut(s) 262, 729
Bst2BI CACGAG 1 cut(s) 1332
Bst2UI CCWGG 1 cut(s) 100
Bst4CI ACNGT 3 cut(s) 205, 559, 1054
Bst6I CTCTTC 1 cut(s) 450
BstAPI GCANNNNNTGC 2 cut(s) 24, 882
BstC8I GCNNGC 2 cut(s) 627, 761
BstDEI CTNAG 2 cut(s) 821, 1047
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 6 cut(s) 195, 706, 861, 1163, 1285, 1324
BstFNI CGCG 5 cut(s) 243, 272, 330, 623, 637
BstH2I RGCGCY 2 cut(s) 67, 96
BstHHI GCGC 8 cut(s) 51, 66, 95, 243, 274, 625, 637, 876
BstKTI GATC 4 cut(s) 178, 597, 829, 979
BstMAI GTCTC 2 cut(s) 458, 1043
BstMBI GATC 4 cut(s) 175, 594, 826, 976
BstMWI GCNNNNNNNGC 8 cut(s) 24, 48, 147, 388, 481, 765, 882, 1013
BstNI CCWGG 1 cut(s) 100
BstSCI CCNGG 4 cut(s) 98, 576, 847, 848
BstSFI CTRYAG 2 cut(s) 695, 1236
BstUI CGCG 5 cut(s) 243, 272, 330, 623, 637
BstV1I GCAGC 4 cut(s) 53, 432, 537, 1222
BstV2I GAAGAC 1 cut(s) 1191
BstX2I RGATCY 2 cut(s) 594, 826
BstYI RGATCY 2 cut(s) 594, 826
BsuI GTATCC 1 cut(s) 787
BsuRI GGCC 3 cut(s) 333, 423, 659
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 6 cut(s) 195, 706, 861, 1163, 1285, 1324
BtsIMutI CAGTG 1 cut(s) 1257
Cac8I GCNNGC 2 cut(s) 627, 761
CfoI GCGC 8 cut(s) 51, 66, 95, 243, 274, 625, 637, 876
Cfr13I GGNCC 3 cut(s) 102, 495, 910
Cfr9I CCCGGG 1 cut(s) 848
CseI GACGC 2 cut(s) 232, 556
CsiI ACCWGGT 1 cut(s) 98
Csp6I GTAC 1 cut(s) 1322
CviAII CATG 4 cut(s) 19, 960, 980, 1154
CviQI GTAC 1 cut(s) 1322
DdeI CTNAG 2 cut(s) 821, 1047
DpnI GATC 4 cut(s) 177, 596, 828, 978
DpnII GATC 4 cut(s) 175, 594, 826, 976
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EciI GGCGGA 3 cut(s) 97, 203, 868
Ecl136II GAGCTC 1 cut(s) 313
Eco130I CCWWGG 2 cut(s) 262, 729
Eco24I GRGCYC 2 cut(s) 174, 315
Eco47I GGWCC 3 cut(s) 102, 495, 910
Eco53kI GAGCTC 1 cut(s) 313
Eco88I CYCGRG 1 cut(s) 848
EcoICRI GAGCTC 1 cut(s) 313
EcoRII CCWGG 1 cut(s) 98
EcoT14I CCWWGG 2 cut(s) 262, 729
EcoT22I ATGCAT 1 cut(s) 1123
EcoT38I GRGCYC 2 cut(s) 174, 315
ErhI CCWWGG 2 cut(s) 262, 729
FaeI CATG 4 cut(s) 22, 963, 983, 1157
FalI AAGNNNNNCTT 2 cut(s) 737, 769
FaqI GGGAC 2 cut(s) 119, 593
FatI CATG 4 cut(s) 18, 959, 979, 1153
FauI CCCGC 3 cut(s) 146, 511, 584
FbaI TGATCA 1 cut(s) 976
FblI GTMKAC 2 cut(s) 165, 294
Fnu4HI GCNGC 9 cut(s) 62, 67, 148, 275, 331, 446, 476, 551, 1236
FokI GGATG 6 cut(s) 182, 713, 868, 1150, 1292, 1331
FriOI GRGCYC 2 cut(s) 174, 315
Fsp4HI GCNGC 9 cut(s) 62, 67, 148, 275, 331, 446, 476, 551, 1236
FspBI CTAG 1 cut(s) 831
GlaI GCGC 8 cut(s) 50, 65, 94, 242, 273, 624, 636, 875
GluI GCNGC 9 cut(s) 62, 67, 148, 275, 331, 446, 476, 551, 1236
GsaI CCCAGC 1 cut(s) 55
GsuI CTGGAG 2 cut(s) 888, 1191
HaeII RGCGCY 2 cut(s) 67, 96
HaeIII GGCC 3 cut(s) 333, 423, 659
HapII CCGG 4 cut(s) 577, 632, 849, 1196
HgaI GACGC 2 cut(s) 232, 556
HhaI GCGC 8 cut(s) 51, 66, 95, 243, 274, 625, 637, 876
Hin1II CATG 4 cut(s) 22, 963, 983, 1157
Hin6I GCGC 8 cut(s) 49, 64, 93, 241, 272, 623, 635, 874
HinP1I GCGC 8 cut(s) 49, 64, 93, 241, 272, 623, 635, 874
HincII GTYRAC 2 cut(s) 295, 571
HindII GTYRAC 2 cut(s) 295, 571
HindIII AAGCTT 2 cut(s) 818, 1295
HinfI GANTC 3 cut(s) 210, 1310, 1337
HpaII CCGG 4 cut(s) 577, 632, 849, 1196
HphI GGTGA 1 cut(s) 622
Hpy166II GTNNAC 5 cut(s) 166, 295, 415, 571, 1257
Hpy188I TCNGA 7 cut(s) 209, 386, 603, 914, 976, 1048, 1224
Hpy188III TCNNGA 5 cut(s) 427, 905, 991, 1208, 1303
Hpy8I GTNNAC 5 cut(s) 166, 295, 415, 571, 1257
Hpy99I CGWCG 5 cut(s) 122, 209, 296, 404, 550
HpyAV CCTTC 6 cut(s) 803, 828, 1006, 1024, 1195, 1260
HpyCH4III ACNGT 3 cut(s) 205, 559, 1054
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 9 cut(s) 69, 391, 697, 722, 845, 885, 1093, 1121, 1238
HpyF10VI GCNNNNNNNGC 8 cut(s) 24, 48, 147, 388, 481, 765, 882, 1013
HpyF3I CTNAG 2 cut(s) 821, 1047
HpySE526I ACGT 1 cut(s) 291
Hsp92II CATG 4 cut(s) 22, 963, 983, 1157
HspAI GCGC 8 cut(s) 49, 64, 93, 241, 272, 623, 635, 874
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 4 cut(s) 175, 594, 826, 976
LmnI GCTCC 6 cut(s) 86, 310, 369, 634, 1069, 1210
Lsp1109I GCAGC 4 cut(s) 53, 432, 537, 1222
LweI GCATC 3 cut(s) 150, 1108, 1222
MabI ACCWGGT 1 cut(s) 98
MaeI CTAG 1 cut(s) 831
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 4 cut(s) 244, 521, 1054, 1159
MalI GATC 4 cut(s) 177, 596, 828, 978
MboI GATC 4 cut(s) 175, 594, 826, 976
MboII GAAGA 6 cut(s) 170, 467, 746, 1046, 1196, 1241
MflI RGATCY 2 cut(s) 594, 826
MhlI GDGCHC 2 cut(s) 174, 315
MluCI AATT 5 cut(s) 337, 499, 652, 878, 984
MmeI TCCRAC 3 cut(s) 108, 187, 1191
Mph1103I ATGCAT 1 cut(s) 1123
MseI TTAA 1 cut(s) 650
MslI CAYNNNNRTG 1 cut(s) 1116
MspI CCGG 4 cut(s) 577, 632, 849, 1196
MspR9I CCNGG 4 cut(s) 100, 578, 849, 850
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 1 cut(s) 100
MvnI CGCG 5 cut(s) 243, 272, 330, 623, 637
MwoI GCNNNNNNNGC 8 cut(s) 24, 48, 147, 388, 481, 765, 882, 1013
NciI CCSGG 3 cut(s) 578, 849, 850
NdeII GATC 4 cut(s) 175, 594, 826, 976
NlaIII CATG 4 cut(s) 22, 963, 983, 1157
NlaIV GGNNCC 5 cut(s) 82, 496, 596, 828, 1206
NmuCI GTSAC 2 cut(s) 244, 521
NsiI ATGCAT 1 cut(s) 1123
PcsI WCGNNNNNNNCGW 4 cut(s) 84, 165, 240, 297
PctI GAATGC 1 cut(s) 393
PfeI GAWTC 3 cut(s) 210, 1310, 1337
PflFI GACNNNGTC 2 cut(s) 131, 230
PflMI CCANNNNNTGG 1 cut(s) 932
PkrI GCNGC 9 cut(s) 63, 68, 149, 276, 332, 447, 477, 552, 1237
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 51
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 5 cut(s) 82, 496, 596, 828, 1206
PspPI GGNCC 3 cut(s) 102, 495, 910
PstI CTGCAG 2 cut(s) 699, 1240
PsuI RGATCY 2 cut(s) 594, 826
PsyI GACNNNGTC 2 cut(s) 131, 230
RsaI GTAC 1 cut(s) 1323
RsaNI GTAC 1 cut(s) 1322
RseI CAYNNNNRTG 1 cut(s) 1116
SacI GAGCTC 1 cut(s) 315
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 1 cut(s) 650
SatI GCNGC 9 cut(s) 62, 67, 148, 275, 331, 446, 476, 551, 1236
Sau3AI GATC 4 cut(s) 175, 594, 826, 976
Sau96I GGNCC 3 cut(s) 102, 495, 910
ScrFI CCNGG 4 cut(s) 100, 578, 849, 850
SduI GDGCHC 2 cut(s) 174, 315
SexAI ACCWGGT 1 cut(s) 98
SfaNI GCATC 3 cut(s) 150, 1108, 1222
SfcI CTRYAG 2 cut(s) 695, 1236
SinI GGWCC 3 cut(s) 102, 495, 910
SmaI CCCGGG 1 cut(s) 850
SmiMI CAYNNNNRTG 1 cut(s) 1116
SmlI CTYRAG 1 cut(s) 1082
SmoI CTYRAG 1 cut(s) 1082
Sse9I AATT 5 cut(s) 337, 499, 652, 878, 984
SspMI CTAG 1 cut(s) 831
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 4 cut(s) 98, 576, 847, 848
StyI CCWWGG 2 cut(s) 262, 729
TaaI ACNGT 3 cut(s) 205, 559, 1054
TaiI ACGT 1 cut(s) 294
TaqI TCGA 4 cut(s) 126, 294, 372, 399
TasI AATT 5 cut(s) 337, 499, 652, 878, 984
TatI WGTACW 1 cut(s) 1321
TauI GCSGC 5 cut(s) 64, 150, 277, 333, 478
TfiI GAWTC 3 cut(s) 210, 1310, 1337
Tru1I TTAA 1 cut(s) 650
Tru9I TTAA 1 cut(s) 650
TscAI CASTG 1 cut(s) 1264
TseFI GTSAC 2 cut(s) 244, 521
TseI GCWGC 4 cut(s) 66, 445, 550, 1235
Tsp45I GTSAC 2 cut(s) 244, 521
TspDTI ATGAA 3 cut(s) 184, 790, 1043
TspGWI ACGGA 1 cut(s) 417
TspMI CCCGGG 1 cut(s) 848
TspRI CASTG 1 cut(s) 1264
Tth111I GACNNNGTC 2 cut(s) 131, 230
Van91I CCANNNNNTGG 1 cut(s) 932
VpaK11BI GGWCC 3 cut(s) 102, 495, 910
XapI RAATTY 2 cut(s) 652, 878
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmaI CCCGGG 1 cut(s) 848
XmiI GTMKAC 2 cut(s) 165, 294
XspI CTAG 1 cut(s) 831
Zsp2I ATGCAT 1 cut(s) 1123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.