Rh3CG325800

Lipase 3 N-terminal region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0007190
Physical Location & Seq
Reverse (-)
35479093 .. 35484410
5318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG325800.1

Sequence Viewer

Length: 957 bp
ATGTCGGTTCTCTGCGGCGCCGAGTGCGTCATGGTGTTGGGCTGCACGCGCTGGCTCTGGCGCCGCTGCACTTACGTCGGCTCTGACGACAGCGCCACCTGGCCCCTCGCCACCCCCGACGAGTTCGATCCCGTCCCCCGCCTCTGCCGCTTGATCCTCGCCGTCTACGAGACCGATCTCCACAACCCTCAGCTCATCCCCAAAGGCGGCTACCGTCCCAACCCGGACGGCGTCGTCAAGCGCGTCACCTACGAGCAGACCTGCGGCCACGCGCCGCCCTACCTCATCTACGTCGACCGCGACCACCGCGACATCGTCCTCGCCATCCGGGGGCTCAATCTGGTGAAGGAGAGCGACTACAAGTTGCTGCTGGATAACAAGCTCGGAATGCAGATGTTCGACGGCGGCTACGTCCACCATGGCCTCTTGAAGTCCGCCATTTGGTTGCTTAACGAGGAAGGCGAGACTCTGAAGCGACTCTGGCTCGAGAACGGACCTGATTACAATCTGGTCTTTGTGGGTCACTCTTTGGGGTCTGGTGTGGCCGCATTGCTGACTGTGATAGTGGTCAATCACAGGGACCGATTGGGTGGGATTCCCCGGAGTCAGATTCGCTGTTATGCTCTAGCTCCGGCGCGCTGTATGTCCTTGAATTTGGCTGTCAAGTACGCCGATGTTATACAATCAGTGGTCTTGCAGGACGATTTCTTGCCGAGAACTGCAACTCCCTTGGAAGATATCTTCAAGTCAATCTTTTGCTTGCCGTGCTTGTTGTTTTTGGTGTGTTTGAGAGATACATTCATACCGGAAGATAGAAAGATTAGAGATCCCAGAAGACTTTATGCACCCGGTCGGATGTATCATATTGTAGAGCGCAAATTTTGCAGGTATTCCACCAAGAACCTCAGCTCTTATTTAGTTAGTCTTAAAGATTATATTGTATTTTTCACTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase3_N Lipase_3

Protein Analysis

318

Amino Acids

36.29

Weight (kDa)

8.39

Isoelectric Point (pI)

41.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase3_N PF03893 7 - 70 1.7e-19 Lipase 3 N-terminal region
Lipase_3 PF01764 106 - 242 7.8e-25 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
Acc36I ACCTGC 2 cut(s) 269, 876
AccB1I GGYRCC 2 cut(s) 17, 60
AccI GTMKAC 2 cut(s) 165, 294
AccII CGCG 6 cut(s) 49, 243, 272, 300, 309, 637
AclWI GGATC 3 cut(s) 122, 148, 821
AcoI YGGCCR 2 cut(s) 265, 543
AcsI RAATTY 2 cut(s) 652, 878
AcuI CTGAAG 1 cut(s) 491
AcyI GRCGYC 3 cut(s) 18, 61, 231
AfaI GTAC 1 cut(s) 668
AfiI CCNNNNNNNGG 3 cut(s) 206, 330, 441
AgsI TTSAA 3 cut(s) 430, 652, 745
AjnI CCWGG 1 cut(s) 98
AloI GAACNNNNNNTCC 2 cut(s) 709, 741
AluBI AGCT 4 cut(s) 193, 382, 629, 909
AluI AGCT 4 cut(s) 193, 382, 629, 909
Alw26I GTCTC 2 cut(s) 164, 458
AlwI GGATC 3 cut(s) 122, 148, 821
Ama87I CYCGRG 1 cut(s) 485
AoxI GGCC 4 cut(s) 101, 265, 421, 543
ApeKI GCWGC 3 cut(s) 42, 66, 367
ApoI RAATTY 2 cut(s) 652, 878
AspLEI GCGC 9 cut(s) 20, 51, 63, 95, 243, 274, 637, 639, 876
AspS9I GGNCC 3 cut(s) 102, 494, 580
AsuC2I CCSGG 4 cut(s) 224, 329, 601, 849
AsuHPI GGTGA 2 cut(s) 238, 355
AvaI CYCGRG 1 cut(s) 485
AvaII GGWCC 2 cut(s) 494, 580
BanI GGYRCC 2 cut(s) 17, 60
BanII GRGCYC 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 841
BbvCI CCTCAGC 2 cut(s) 189, 905
BbvI GCAGC 3 cut(s) 29, 53, 354
BccI CCATC 1 cut(s) 332
BceAI ACGGC 4 cut(s) 146, 244, 418, 748
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 100
BcnI CCSGG 4 cut(s) 224, 329, 601, 849
BcoDI GTCTC 2 cut(s) 164, 458
BfaI CTAG 1 cut(s) 626
BfoI RGCGCY 3 cut(s) 21, 64, 96
BfuAI ACCTGC 2 cut(s) 269, 876
Bme1390I CCNGG 5 cut(s) 100, 224, 329, 601, 849
Bme18I GGWCC 2 cut(s) 494, 580
BmeT110I CYCGRG 1 cut(s) 485
BmgT120I GGNCC 3 cut(s) 102, 494, 580
BmiI GGNNCC 4 cut(s) 19, 62, 104, 581
BmrFI CCNGG 5 cut(s) 100, 224, 329, 601, 849
BpiI GAAGAC 1 cut(s) 841
Bpu10I CCTNAGC 2 cut(s) 189, 905
BpuMI CCSGG 4 cut(s) 224, 329, 601, 849
BsaBI GATNNNNATC 1 cut(s) 504
BsaHI GRCGYC 3 cut(s) 18, 61, 231
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 4 cut(s) 328, 418, 599, 729
BsaWI WCCGGW 1 cut(s) 805
BsaXI ACNNNNNCTCC 2 cut(s) 709, 739
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 330, 441
Bse3DI GCAATG 1 cut(s) 548
Bse8I GATNNNNATC 1 cut(s) 504
BseBI CCWGG 1 cut(s) 100
BseDI CCNNGG 4 cut(s) 328, 418, 599, 729
BseGI GGATG 3 cut(s) 195, 324, 861
BseJI GATNNNNATC 1 cut(s) 504
BseLI CCNNNNNNNGG 3 cut(s) 206, 330, 441
BseMI GCAATG 1 cut(s) 548
BseMII CTCAG 2 cut(s) 203, 919
BsePI GCGCGC 1 cut(s) 635
BseXI GCAGC 3 cut(s) 29, 53, 354
BsgI GTGCAG 2 cut(s) 28, 52
Bsh1236I CGCG 6 cut(s) 49, 243, 272, 300, 309, 637
Bsh1285I CGRYCG 2 cut(s) 298, 853
BshFI GGCC 4 cut(s) 103, 267, 423, 545
BshNI GGYRCC 2 cut(s) 17, 60
BsiEI CGRYCG 2 cut(s) 298, 853
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 6 cut(s) 224, 328, 601, 632, 806, 849
BslFI GGGAC 3 cut(s) 119, 201, 593
BslI CCNNNNNNNGG 3 cut(s) 206, 330, 441
BsmAI GTCTC 2 cut(s) 164, 458
BsmFI GGGAC 3 cut(s) 119, 201, 593
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 4 cut(s) 103, 267, 423, 545
Bso31I GGTCTC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 485
Bsp1286I GDGCHC 1 cut(s) 336
Bsp143I GATC 4 cut(s) 127, 153, 175, 826
Bsp19I CCATGG 1 cut(s) 418
BspANI GGCC 4 cut(s) 103, 267, 423, 545
BspCNI CTCAG 2 cut(s) 202, 918
BspFNI CGCG 6 cut(s) 49, 243, 272, 300, 309, 637
BspLI GGNNCC 4 cut(s) 19, 62, 104, 581
BspMI ACCTGC 2 cut(s) 269, 876
BspPI GGATC 3 cut(s) 122, 148, 821
BspT107I GGYRCC 2 cut(s) 17, 60
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 548
BssECI CCNNGG 4 cut(s) 328, 418, 599, 729
BssHII GCGCGC 1 cut(s) 635
BssMI GATC 4 cut(s) 127, 153, 175, 826
BssNI GRCGYC 3 cut(s) 18, 61, 231
BssT1I CCWWGG 2 cut(s) 418, 729
Bst2UI CCWGG 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 215, 559
BstACI GRCGYC 3 cut(s) 18, 61, 231
BstAPI GCANNNNNTGC 1 cut(s) 882
BstC8I GCNNGC 4 cut(s) 47, 53, 637, 761
BstDEI CTNAG 2 cut(s) 189, 905
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 3 cut(s) 195, 324, 861
BstFNI CGCG 6 cut(s) 49, 243, 272, 300, 309, 637
BstH2I RGCGCY 3 cut(s) 21, 64, 96
BstHHI GCGC 9 cut(s) 20, 51, 63, 95, 243, 274, 637, 639, 876
BstKTI GATC 4 cut(s) 130, 156, 178, 829
BstMAI GTCTC 2 cut(s) 164, 458
BstMBI GATC 4 cut(s) 127, 153, 175, 826
BstMCI CGRYCG 2 cut(s) 298, 853
BstMWI GCNNNNNNNGC 8 cut(s) 24, 48, 147, 306, 388, 481, 765, 882
BstNI CCWGG 1 cut(s) 100
BstSCI CCNGG 5 cut(s) 98, 222, 327, 599, 847
BstUI CGCG 6 cut(s) 49, 243, 272, 300, 309, 637
BstV1I GCAGC 3 cut(s) 29, 53, 354
BstV2I GAAGAC 1 cut(s) 841
BstX2I RGATCY 1 cut(s) 826
BstYI RGATCY 1 cut(s) 826
BsuRI GGCC 4 cut(s) 103, 267, 423, 545
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 3 cut(s) 195, 324, 861
BtsIMutI CAGTG 1 cut(s) 693
BveI ACCTGC 2 cut(s) 269, 876
Cac8I GCNNGC 4 cut(s) 47, 53, 637, 761
CfoI GCGC 9 cut(s) 20, 51, 63, 95, 243, 274, 637, 639, 876
Cfr13I GGNCC 3 cut(s) 102, 494, 580
CseI GACGC 3 cut(s) 16, 220, 232
Csp6I GTAC 1 cut(s) 667
CviAII CATG 2 cut(s) 31, 419
CviQI GTAC 1 cut(s) 667
DdeI CTNAG 2 cut(s) 189, 905
DinI GGCGCC 2 cut(s) 19, 62
DpnI GATC 4 cut(s) 129, 155, 177, 828
DpnII GATC 4 cut(s) 127, 153, 175, 826
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 2 cut(s) 265, 543
EciI GGCGGA 1 cut(s) 424
Eco130I CCWWGG 2 cut(s) 418, 729
Eco24I GRGCYC 1 cut(s) 336
Eco31I GGTCTC 1 cut(s) 164
Eco32I GATATC 1 cut(s) 739
Eco47I GGWCC 2 cut(s) 494, 580
Eco57I CTGAAG 1 cut(s) 491
Eco88I CYCGRG 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 98
EcoRV GATATC 1 cut(s) 739
EcoT14I CCWWGG 2 cut(s) 418, 729
EcoT38I GRGCYC 1 cut(s) 336
EgeI GGCGCC 2 cut(s) 19, 62
EheI GGCGCC 2 cut(s) 19, 62
ErhI CCWWGG 2 cut(s) 418, 729
FaeI CATG 2 cut(s) 34, 422
FalI AAGNNNNNCTT 2 cut(s) 737, 769
FaqI GGGAC 3 cut(s) 119, 201, 593
FatI CATG 2 cut(s) 30, 418
FauI CCCGC 1 cut(s) 146
FblI GTMKAC 2 cut(s) 165, 294
FokI GGATG 3 cut(s) 182, 311, 868
FriOI GRGCYC 1 cut(s) 336
FspBI CTAG 1 cut(s) 626
GlaI GCGC 9 cut(s) 19, 50, 62, 94, 242, 273, 636, 638, 875
HaeII RGCGCY 3 cut(s) 21, 64, 96
HaeIII GGCC 4 cut(s) 103, 267, 423, 545
HapII CCGG 6 cut(s) 224, 328, 601, 632, 806, 849
HgaI GACGC 3 cut(s) 16, 220, 232
HhaI GCGC 9 cut(s) 20, 51, 63, 95, 243, 274, 637, 639, 876
Hin1I GRCGYC 3 cut(s) 18, 61, 231
Hin1II CATG 2 cut(s) 34, 422
Hin6I GCGC 9 cut(s) 18, 49, 61, 93, 241, 272, 635, 637, 874
HinP1I GCGC 9 cut(s) 18, 49, 61, 93, 241, 272, 635, 637, 874
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 5 cut(s) 466, 477, 595, 604, 610
HpaII CCGG 6 cut(s) 224, 328, 601, 632, 806, 849
HphI GGTGA 2 cut(s) 238, 355
Hpy166II GTNNAC 3 cut(s) 166, 295, 415
Hpy188I TCNGA 5 cut(s) 85, 386, 471, 609, 855
Hpy188III TCNNGA 2 cut(s) 427, 487
Hpy8I GTNNAC 3 cut(s) 166, 295, 415
Hpy99I CGWCG 5 cut(s) 80, 122, 236, 296, 404
HpyAV CCTTC 2 cut(s) 340, 452
HpyCH4III ACNGT 2 cut(s) 215, 559
HpyCH4IV ACGT 3 cut(s) 75, 291, 411
HpyCH4V TGCA 7 cut(s) 45, 69, 391, 697, 722, 845, 885
HpyF10VI GCNNNNNNNGC 8 cut(s) 24, 48, 147, 306, 388, 481, 765, 882
HpyF3I CTNAG 2 cut(s) 189, 905
HpySE526I ACGT 3 cut(s) 75, 291, 411
Hsp92I GRCGYC 3 cut(s) 18, 61, 231
Hsp92II CATG 2 cut(s) 34, 422
HspAI GCGC 9 cut(s) 18, 49, 61, 93, 241, 272, 635, 637, 874
KasI GGCGCC 2 cut(s) 17, 60
Kzo9I GATC 4 cut(s) 127, 153, 175, 826
LmnI GCTCC 1 cut(s) 634
Lsp1109I GCAGC 3 cut(s) 29, 53, 354
MaeI CTAG 1 cut(s) 626
MaeII ACGT 3 cut(s) 75, 291, 411
MaeIII GTNAC 2 cut(s) 244, 521
MalI GATC 4 cut(s) 129, 155, 177, 828
MboI GATC 4 cut(s) 127, 153, 175, 826
MboII GAAGA 4 cut(s) 733, 746, 821, 846
MflI RGATCY 1 cut(s) 826
MhlI GDGCHC 1 cut(s) 336
MluCI AATT 2 cut(s) 652, 878
Mly113I GGCGCC 2 cut(s) 18, 61
MlyI GAGTC 3 cut(s) 460, 471, 613
MmeI TCCRAC 1 cut(s) 833
MnlI CCTC 9 cut(s) 116, 152, 167, 198, 293, 329, 434, 448, 914
MseI TTAA 2 cut(s) 450, 927
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 6 cut(s) 224, 328, 601, 632, 806, 849
MspR9I CCNGG 5 cut(s) 100, 224, 329, 601, 849
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 1 cut(s) 100
MvnI CGCG 6 cut(s) 49, 243, 272, 300, 309, 637
MwoI GCNNNNNNNGC 8 cut(s) 24, 48, 147, 306, 388, 481, 765, 882
NarI GGCGCC 2 cut(s) 18, 61
NciI CCSGG 4 cut(s) 224, 329, 601, 849
NcoI CCATGG 1 cut(s) 418
NdeII GATC 4 cut(s) 127, 153, 175, 826
NlaIII CATG 2 cut(s) 34, 422
NlaIV GGNNCC 4 cut(s) 19, 62, 104, 581
NmeAIII GCCGAG 2 cut(s) 46, 738
NmuCI GTSAC 2 cut(s) 244, 521
PaeR7I CTCGAG 1 cut(s) 485
PauI GCGCGC 1 cut(s) 635
PcsI WCGNNNNNNNCGW 7 cut(s) 84, 114, 165, 240, 297, 408, 459
PctI GAATGC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 595, 610
PflFI GACNNNGTC 2 cut(s) 230, 314
PleI GAGTC 3 cut(s) 460, 471, 612
PluTI GGCGCC 2 cut(s) 21, 64
PpsI GAGTC 3 cut(s) 460, 471, 612
Psp6I CCWGG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 4 cut(s) 19, 62, 104, 581
PspPI GGNCC 3 cut(s) 102, 494, 580
PsuI RGATCY 1 cut(s) 826
PsyI GACNNNGTC 2 cut(s) 230, 314
PteI GCGCGC 1 cut(s) 635
RsaI GTAC 1 cut(s) 668
RsaNI GTAC 1 cut(s) 667
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 450, 927
Sau3AI GATC 4 cut(s) 127, 153, 175, 826
Sau96I GGNCC 3 cut(s) 102, 494, 580
SchI GAGTC 3 cut(s) 460, 471, 613
ScrFI CCNGG 5 cut(s) 100, 224, 329, 601, 849
SduI GDGCHC 1 cut(s) 336
SfoI GGCGCC 2 cut(s) 19, 62
Sfr274I CTCGAG 1 cut(s) 485
SinI GGWCC 2 cut(s) 494, 580
SlaI CTCGAG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 2 cut(s) 652, 878
SspDI GGCGCC 2 cut(s) 17, 60
SspMI CTAG 1 cut(s) 626
StyD4I CCNGG 5 cut(s) 98, 222, 327, 599, 847
StyI CCWWGG 2 cut(s) 418, 729
TaaI ACNGT 2 cut(s) 215, 559
TaiI ACGT 3 cut(s) 78, 294, 414
TaqI TCGA 4 cut(s) 126, 294, 399, 486
TaqII GACCGA 2 cut(s) 188, 597
TasI AATT 2 cut(s) 652, 878
TauI GCSGC 8 cut(s) 18, 66, 150, 210, 267, 277, 408, 548
TfiI GAWTC 2 cut(s) 595, 610
Tru1I TTAA 2 cut(s) 450, 927
Tru9I TTAA 2 cut(s) 450, 927
TscAI CASTG 1 cut(s) 693
TseFI GTSAC 2 cut(s) 244, 521
TseI GCWGC 3 cut(s) 42, 66, 367
Tsp45I GTSAC 2 cut(s) 244, 521
TspDTI ATGAA 1 cut(s) 790
TspGWI ACGGA 1 cut(s) 507
TspRI CASTG 1 cut(s) 693
Tth111I GACNNNGTC 2 cut(s) 230, 314
VpaK11BI GGWCC 2 cut(s) 494, 580
XapI RAATTY 2 cut(s) 652, 878
XhoI CTCGAG 1 cut(s) 485
XmiI GTMKAC 2 cut(s) 165, 294
XspI CTAG 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.