Rw3G025840

Lipase 3 N-terminal region

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
34871214 .. 34875915
4702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G025840.1

Sequence Viewer

Length: 1305 bp
ATGTCGGTTCTCTGCGGCGCCGAGTGCGTCATGGTGTTGGGCTGCACGCGCTGGCTCTGGCGCCGCTGCACTTACGTCGGCTCCGACGACAGCGCCACCTGGCCCCTCGCCACCCCCGACGAGTTCGAGCCCGTCCCCCGCCTCTGCCGCTTGATCCTCGCCGTCTACGAGACCGATCTCCACAACCCTCAGCTCATCCCCAAGGGCGGCTACCGTCCCAACCCTGACGGCGTCGTCAAGCGCGTCACCTACGAGCAGACCTGCGGCCACGCGCCGCCCTACCTCATCTACGTCGACCGCGACCACCGCGACATCGTCCTCGCCATCCGGGGGCTCAATCTGGTGAAGGAGAGCGACTACAAGTTGCTGCTGGATAACAAGCTCGGAATGCAGATGTTCGACGGCGGCTACGAAGGCGAGACTCTGAAGCGACTCTGGCTTGAGAATGGACCTGATTACAATCTGGTCTTTGTGGGTCACTCTTTGGGGTCTGGTGTGGCCGCATTGCTGACTGTGATAGTGGTCAATCACAGGGACCGATTGGGTGGGATTCCCCGGAGTCAGATTCGCTGTTATGCTCTAGCTCCGGCGCGCTGTATGTCCTTGAATTTGGCTGTCAAGTACGCCGATGTTATACAATCAGTGGTCTTGCAGGACGATTTCTTGCCGAGAACTGCAACTCCCTTGGAAGATATCTTCAAGTCAATCTTTTGCTTGCCGTGCTTGTTGTTTTTGGTGTGTTTGAGAGATACATTCATACCGGAAGATAGAAAGATTAGAGATCCCAGAAGACTTTATGCACCCGGTCGGATGTATCATATTGTAGAGCGCAAATTTTGCAGATGTGGGAGGTATCCTCCAGAGGTCAGAACTGCCATTCCTGTTGATGGAAGATTTGAACATATTGTCTTGTCATGTCATGCTACATCAGATCATGGAATTATCTGGATAGAAAGGGAAGCAGAGAAGGCTGTAGAAAGAATGAGGGAAAGGAGCTCTGAGACCATAACAACTGCTCCAAAAGTACAAAAACTAGAGAGGCTGCAGACGTTTGAAAAGGAACACAAAGATGCGTTGGAAAGAGCTGTCAGTTTAAATGTGCCTTATGCTGTAACGGCCTCTGAGGAAGCCTCCGAGGATCAAAAACCGGAGGAGGCTCCGCAGAGTGAGACTGAAGATGTGTCAGAGACAAAGTCAAAGTCCACTAGTGGAAGGACAAACTGGGATCATGTGGTTCAAAAGCTATTTAAGAAAACTGAGTCTGGAGATATACAGCTAAATAGAGAATCAAATGCCCTCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

434

Amino Acids

49.32

Weight (kDa)

6.3

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase3_N PF03893 7 - 70 2.5e-20 Lipase 3 N-terminal region
Lipase_3 PF01764 140 - 227 1.9e-17 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 269
AccB1I GGYRCC 2 cut(s) 17, 60
AccI GTMKAC 2 cut(s) 165, 294
AccII CGCG 6 cut(s) 49, 243, 272, 300, 309, 592
AclWI GGATC 4 cut(s) 148, 776, 1146, 1233
AcoI YGGCCR 2 cut(s) 265, 498
AcsI RAATTY 2 cut(s) 607, 833
AcuI CTGAAG 2 cut(s) 446, 1194
AcyI GRCGYC 3 cut(s) 18, 61, 231
AfaI GTAC 2 cut(s) 623, 1026
AfiI CCNNNNNNNGG 3 cut(s) 206, 330, 887
AgsI TTSAA 5 cut(s) 607, 700, 899, 1055, 1238
AhlI ACTAGT 1 cut(s) 1205
AjnI CCWGG 1 cut(s) 98
AloI GAACNNNNNNTCC 4 cut(s) 664, 696, 862, 894
AluBI AGCT 7 cut(s) 193, 382, 584, 996, 1085, 1243, 1276
AluI AGCT 7 cut(s) 193, 382, 584, 996, 1085, 1243, 1276
Alw21I GWGCWC 1 cut(s) 998
Alw26I GTCTC 5 cut(s) 164, 413, 995, 1163, 1181
AlwI GGATC 4 cut(s) 148, 776, 1146, 1233
AoxI GGCC 4 cut(s) 101, 265, 498, 1116
ApeKI GCWGC 4 cut(s) 42, 66, 367, 1042
ApoI RAATTY 2 cut(s) 607, 833
ArsI GACNNNNNNTTYG 2 cut(s) 1184, 1216
AspLEI GCGC 9 cut(s) 20, 51, 63, 95, 243, 274, 592, 594, 831
AspS9I GGNCC 3 cut(s) 102, 449, 535
AsuC2I CCSGG 3 cut(s) 329, 556, 804
AsuHPI GGTGA 2 cut(s) 238, 355
AvaII GGWCC 2 cut(s) 449, 535
BanI GGYRCC 2 cut(s) 17, 60
BanII GRGCYC 3 cut(s) 132, 336, 998
BbsI GAAGAC 1 cut(s) 796
Bbv12I GWGCWC 1 cut(s) 998
BbvCI CCTCAGC 1 cut(s) 189
BbvI GCAGC 4 cut(s) 29, 53, 354, 1029
BccI CCATC 2 cut(s) 332, 881
BceAI ACGGC 5 cut(s) 146, 244, 418, 703, 1131
BcgI CGANNNNNNTGC 2 cut(s) 58, 92
BciT130I CCWGG 1 cut(s) 100
BciVI GTATCC 1 cut(s) 864
BcnI CCSGG 3 cut(s) 329, 556, 804
BcoDI GTCTC 5 cut(s) 164, 413, 995, 1163, 1181
BcuI ACTAGT 1 cut(s) 1205
BfaI CTAG 4 cut(s) 581, 1034, 1206, 1303
BfmI CTRYAG 2 cut(s) 972, 1043
BfoI RGCGCY 3 cut(s) 21, 64, 96
BfuAI ACCTGC 1 cut(s) 269
BfuI GTATCC 1 cut(s) 864
Bme1390I CCNGG 4 cut(s) 100, 329, 556, 804
Bme18I GGWCC 2 cut(s) 449, 535
BmgT120I GGNCC 3 cut(s) 102, 449, 535
BmiI GGNNCC 6 cut(s) 19, 62, 82, 104, 536, 1158
BmrFI CCNGG 4 cut(s) 100, 329, 556, 804
BmrI ACTGGG 1 cut(s) 1231
BmsI GCATC 1 cut(s) 1060
BmuI ACTGGG 1 cut(s) 1231
BpiI GAAGAC 1 cut(s) 796
BplI GAGNNNNNCTC 4 cut(s) 841, 873, 1115, 1147
BpmI CTGGAG 2 cut(s) 843, 1284
Bpu10I CCTNAGC 1 cut(s) 189
BpuEI CTTGAG 1 cut(s) 461
BpuMI CCSGG 3 cut(s) 329, 556, 804
BsaBI GATNNNNATC 1 cut(s) 459
BsaHI GRCGYC 3 cut(s) 18, 61, 231
BsaI GGTCTC 2 cut(s) 164, 995
BsaJI CCNNGG 5 cut(s) 201, 328, 554, 684, 1134
BsaWI WCCGGW 2 cut(s) 760, 1147
BsaXI ACNNNNNCTCC 6 cut(s) 65, 95, 664, 694, 1000, 1030
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 330, 887
Bse1I ACTGG 1 cut(s) 1226
Bse3DI GCAATG 1 cut(s) 503
Bse8I GATNNNNATC 1 cut(s) 459
BseBI CCWGG 1 cut(s) 100
BseDI CCNNGG 5 cut(s) 201, 328, 554, 684, 1134
BseGI GGATG 3 cut(s) 195, 324, 816
BseJI GATNNNNATC 1 cut(s) 459
BseLI CCNNNNNNNGG 3 cut(s) 206, 330, 887
BseMI GCAATG 1 cut(s) 503
BseMII CTCAG 4 cut(s) 203, 990, 1113, 1248
BseNI ACTGG 1 cut(s) 1226
BsePI GCGCGC 1 cut(s) 590
BseRI GAGGAG 1 cut(s) 1166
BseXI GCAGC 4 cut(s) 29, 53, 354, 1029
BsgI GTGCAG 2 cut(s) 28, 52
Bsh1236I CGCG 6 cut(s) 49, 243, 272, 300, 309, 592
Bsh1285I CGRYCG 2 cut(s) 298, 808
BshFI GGCC 4 cut(s) 103, 267, 500, 1118
BshNI GGYRCC 2 cut(s) 17, 60
BsiEI CGRYCG 2 cut(s) 298, 808
BsiHKAI GWGCWC 1 cut(s) 998
BsiSI CCGG 6 cut(s) 328, 556, 587, 761, 804, 1148
BslFI GGGAC 3 cut(s) 119, 201, 548
BslI CCNNNNNNNGG 3 cut(s) 206, 330, 887
BsmAI GTCTC 5 cut(s) 164, 413, 995, 1163, 1181
BsmFI GGGAC 3 cut(s) 119, 201, 548
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 4 cut(s) 103, 267, 500, 1118
Bso31I GGTCTC 2 cut(s) 164, 995
Bsp1286I GDGCHC 3 cut(s) 132, 336, 998
Bsp143I GATC 6 cut(s) 153, 175, 781, 931, 1138, 1225
BspANI GGCC 4 cut(s) 103, 267, 500, 1118
BspCNI CTCAG 4 cut(s) 202, 991, 1114, 1249
BspFNI CGCG 6 cut(s) 49, 243, 272, 300, 309, 592
BspLI GGNNCC 6 cut(s) 19, 62, 82, 104, 536, 1158
BspMAI CTGCAG 1 cut(s) 1047
BspMI ACCTGC 1 cut(s) 269
BspPI GGATC 4 cut(s) 148, 776, 1146, 1233
BspT107I GGYRCC 2 cut(s) 17, 60
BspTNI GGTCTC 2 cut(s) 164, 995
BsrDI GCAATG 1 cut(s) 503
BsrI ACTGG 1 cut(s) 1226
BssECI CCNNGG 5 cut(s) 201, 328, 554, 684, 1134
BssHII GCGCGC 1 cut(s) 590
BssMI GATC 6 cut(s) 153, 175, 781, 931, 1138, 1225
BssNI GRCGYC 3 cut(s) 18, 61, 231
BssT1I CCWWGG 2 cut(s) 201, 684
Bst2UI CCWGG 1 cut(s) 100
Bst4CI ACNGT 2 cut(s) 215, 514
BstACI GRCGYC 3 cut(s) 18, 61, 231
BstAPI GCANNNNNTGC 1 cut(s) 837
BstC8I GCNNGC 4 cut(s) 47, 53, 592, 716
BstDEI CTNAG 4 cut(s) 189, 999, 1122, 1257
BstF5I GGATG 3 cut(s) 195, 324, 816
BstFNI CGCG 6 cut(s) 49, 243, 272, 300, 309, 592
BstH2I RGCGCY 3 cut(s) 21, 64, 96
BstHHI GCGC 9 cut(s) 20, 51, 63, 95, 243, 274, 592, 594, 831
BstKTI GATC 6 cut(s) 156, 178, 784, 934, 1141, 1228
BstMAI GTCTC 5 cut(s) 164, 413, 995, 1163, 1181
BstMBI GATC 6 cut(s) 153, 175, 781, 931, 1138, 1225
BstMCI CGRYCG 2 cut(s) 298, 808
BstNI CCWGG 1 cut(s) 100
BstSCI CCNGG 4 cut(s) 98, 327, 554, 802
BstSFI CTRYAG 2 cut(s) 972, 1043
BstUI CGCG 6 cut(s) 49, 243, 272, 300, 309, 592
BstV1I GCAGC 4 cut(s) 29, 53, 354, 1029
BstV2I GAAGAC 1 cut(s) 796
BstX2I RGATCY 1 cut(s) 781
BstYI RGATCY 1 cut(s) 781
BsuI GTATCC 1 cut(s) 864
BsuRI GGCC 4 cut(s) 103, 267, 500, 1118
BtsCI GGATG 3 cut(s) 195, 324, 816
BtsIMutI CAGTG 1 cut(s) 648
BveI ACCTGC 1 cut(s) 269
Cac8I GCNNGC 4 cut(s) 47, 53, 592, 716
CfoI GCGC 9 cut(s) 20, 51, 63, 95, 243, 274, 592, 594, 831
Cfr13I GGNCC 3 cut(s) 102, 449, 535
CseI GACGC 3 cut(s) 16, 220, 232
Csp6I GTAC 2 cut(s) 622, 1025
CviAII CATG 5 cut(s) 31, 915, 920, 935, 1229
CviQI GTAC 2 cut(s) 622, 1025
DdeI CTNAG 4 cut(s) 189, 999, 1122, 1257
DinI GGCGCC 2 cut(s) 19, 62
DpnI GATC 6 cut(s) 155, 177, 783, 933, 1140, 1227
DpnII GATC 6 cut(s) 153, 175, 781, 931, 1138, 1225
DraI TTTAAA 1 cut(s) 1095
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 2 cut(s) 265, 498
Ecl136II GAGCTC 1 cut(s) 996
Eco130I CCWWGG 2 cut(s) 201, 684
Eco24I GRGCYC 3 cut(s) 132, 336, 998
Eco31I GGTCTC 2 cut(s) 164, 995
Eco32I GATATC 1 cut(s) 694
Eco47I GGWCC 2 cut(s) 449, 535
Eco53kI GAGCTC 1 cut(s) 996
Eco57I CTGAAG 2 cut(s) 446, 1194
EcoICRI GAGCTC 1 cut(s) 996
EcoRII CCWGG 1 cut(s) 98
EcoRV GATATC 1 cut(s) 694
EcoT14I CCWWGG 2 cut(s) 201, 684
EcoT38I GRGCYC 3 cut(s) 132, 336, 998
EgeI GGCGCC 2 cut(s) 19, 62
EheI GGCGCC 2 cut(s) 19, 62
ErhI CCWWGG 2 cut(s) 201, 684
FaeI CATG 5 cut(s) 34, 918, 923, 938, 1232
FalI AAGNNNNNCTT 2 cut(s) 692, 724
FaqI GGGAC 3 cut(s) 119, 201, 548
FatI CATG 5 cut(s) 30, 914, 919, 934, 1228
FauI CCCGC 1 cut(s) 146
FblI GTMKAC 2 cut(s) 165, 294
FokI GGATG 3 cut(s) 182, 311, 823
FriOI GRGCYC 3 cut(s) 132, 336, 998
FspBI CTAG 4 cut(s) 581, 1034, 1206, 1303
GlaI GCGC 9 cut(s) 19, 50, 62, 94, 242, 273, 591, 593, 830
GsuI CTGGAG 2 cut(s) 843, 1284
HaeII RGCGCY 3 cut(s) 21, 64, 96
HaeIII GGCC 4 cut(s) 103, 267, 500, 1118
HapII CCGG 6 cut(s) 328, 556, 587, 761, 804, 1148
HgaI GACGC 3 cut(s) 16, 220, 232
HhaI GCGC 9 cut(s) 20, 51, 63, 95, 243, 274, 592, 594, 831
Hin1I GRCGYC 3 cut(s) 18, 61, 231
Hin1II CATG 5 cut(s) 34, 918, 923, 938, 1232
Hin6I GCGC 9 cut(s) 18, 49, 61, 93, 241, 272, 590, 592, 829
HinP1I GCGC 9 cut(s) 18, 49, 61, 93, 241, 272, 590, 592, 829
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 7 cut(s) 421, 432, 550, 559, 565, 1259, 1286
HpaII CCGG 6 cut(s) 328, 556, 587, 761, 804, 1148
HphI GGTGA 2 cut(s) 238, 355
Hpy166II GTNNAC 3 cut(s) 166, 295, 1203
Hpy188III TCNNGA 3 cut(s) 860, 946, 1263
Hpy8I GTNNAC 3 cut(s) 166, 295, 1203
Hpy99I CGWCG 6 cut(s) 80, 89, 122, 236, 296, 404
HpyAV CCTTC 4 cut(s) 340, 407, 961, 1206
HpyCH4III ACNGT 2 cut(s) 215, 514
HpyCH4IV ACGT 3 cut(s) 75, 291, 1049
HpyCH4V TGCA 8 cut(s) 45, 69, 391, 652, 677, 800, 840, 1045
HpyF3I CTNAG 4 cut(s) 189, 999, 1122, 1257
HpySE526I ACGT 3 cut(s) 75, 291, 1049
Hsp92I GRCGYC 3 cut(s) 18, 61, 231
Hsp92II CATG 5 cut(s) 34, 918, 923, 938, 1232
HspAI GCGC 9 cut(s) 18, 49, 61, 93, 241, 272, 590, 592, 829
KasI GGCGCC 2 cut(s) 17, 60
Kzo9I GATC 6 cut(s) 153, 175, 781, 931, 1138, 1225
LmnI GCTCC 5 cut(s) 86, 589, 993, 1021, 1162
Lsp1109I GCAGC 4 cut(s) 29, 53, 354, 1029
LweI GCATC 1 cut(s) 1060
MaeI CTAG 4 cut(s) 581, 1034, 1206, 1303
MaeII ACGT 3 cut(s) 75, 291, 1049
MaeIII GTNAC 3 cut(s) 244, 476, 1111
MalI GATC 6 cut(s) 155, 177, 783, 933, 1140, 1227
MboI GATC 6 cut(s) 153, 175, 781, 931, 1138, 1225
MboII GAAGA 6 cut(s) 688, 701, 776, 801, 903, 1187
MflI RGATCY 1 cut(s) 781
MhlI GDGCHC 3 cut(s) 132, 336, 998
MluCI AATT 3 cut(s) 607, 833, 939
Mly113I GGCGCC 2 cut(s) 18, 61
MlyI GAGTC 4 cut(s) 415, 426, 568, 1268
MmeI TCCRAC 3 cut(s) 108, 788, 1056
MseI TTAA 2 cut(s) 1094, 1248
MslI CAYNNNNRTG 1 cut(s) 1068
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 6 cut(s) 328, 556, 587, 761, 804, 1148
MspR9I CCNGG 4 cut(s) 100, 329, 556, 804
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 1 cut(s) 100
MvnI CGCG 6 cut(s) 49, 243, 272, 300, 309, 592
NarI GGCGCC 2 cut(s) 18, 61
NciI CCSGG 3 cut(s) 329, 556, 804
NdeII GATC 6 cut(s) 153, 175, 781, 931, 1138, 1225
NlaIII CATG 5 cut(s) 34, 918, 923, 938, 1232
NlaIV GGNNCC 6 cut(s) 19, 62, 82, 104, 536, 1158
NmeAIII GCCGAG 2 cut(s) 46, 693
NmuCI GTSAC 2 cut(s) 244, 476
PauI GCGCGC 1 cut(s) 590
PcsI WCGNNNNNNNCGW 7 cut(s) 81, 84, 114, 165, 240, 297, 408
PctI GAATGC 1 cut(s) 393
PfeI GAWTC 3 cut(s) 550, 565, 1286
PflFI GACNNNGTC 3 cut(s) 230, 314, 1192
PleI GAGTC 4 cut(s) 415, 426, 567, 1267
PluTI GGCGCC 2 cut(s) 21, 64
PpsI GAGTC 4 cut(s) 415, 426, 567, 1267
Psp124BI GAGCTC 1 cut(s) 998
Psp6I CCWGG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 6 cut(s) 19, 62, 82, 104, 536, 1158
PspPI GGNCC 3 cut(s) 102, 449, 535
PstI CTGCAG 1 cut(s) 1047
PsuI RGATCY 1 cut(s) 781
PsyI GACNNNGTC 3 cut(s) 230, 314, 1192
PteI GCGCGC 1 cut(s) 590
RsaI GTAC 2 cut(s) 623, 1026
RsaNI GTAC 2 cut(s) 622, 1025
RseI CAYNNNNRTG 1 cut(s) 1068
SacI GAGCTC 1 cut(s) 998
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 1094, 1248
Sau3AI GATC 6 cut(s) 153, 175, 781, 931, 1138, 1225
Sau96I GGNCC 3 cut(s) 102, 449, 535
SchI GAGTC 4 cut(s) 415, 426, 568, 1268
ScrFI CCNGG 4 cut(s) 100, 329, 556, 804
SduI GDGCHC 3 cut(s) 132, 336, 998
SfaNI GCATC 1 cut(s) 1060
SfcI CTRYAG 2 cut(s) 972, 1043
SfoI GGCGCC 2 cut(s) 19, 62
SinI GGWCC 2 cut(s) 449, 535
SmiMI CAYNNNNRTG 1 cut(s) 1068
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SpeI ACTAGT 1 cut(s) 1205
Sse9I AATT 3 cut(s) 607, 833, 939
SspDI GGCGCC 2 cut(s) 17, 60
SspMI CTAG 4 cut(s) 581, 1034, 1206, 1303
SstI GAGCTC 1 cut(s) 998
StyD4I CCNGG 4 cut(s) 98, 327, 554, 802
StyI CCWWGG 2 cut(s) 201, 684
TaaI ACNGT 2 cut(s) 215, 514
TaiI ACGT 3 cut(s) 78, 294, 1052
TaqI TCGA 3 cut(s) 126, 294, 399
TaqII GACCGA 2 cut(s) 188, 552
TasI AATT 3 cut(s) 607, 833, 939
TatI WGTACW 1 cut(s) 1024
TauI GCSGC 8 cut(s) 18, 66, 150, 210, 267, 277, 408, 503
TfiI GAWTC 3 cut(s) 550, 565, 1286
Tru1I TTAA 2 cut(s) 1094, 1248
Tru9I TTAA 2 cut(s) 1094, 1248
TscAI CASTG 1 cut(s) 648
TseFI GTSAC 2 cut(s) 244, 476
TseI GCWGC 4 cut(s) 42, 66, 367, 1042
Tsp45I GTSAC 2 cut(s) 244, 476
TspDTI ATGAA 1 cut(s) 745
TspRI CASTG 1 cut(s) 648
Tth111I GACNNNGTC 3 cut(s) 230, 314, 1192
VpaK11BI GGWCC 2 cut(s) 449, 535
XapI RAATTY 2 cut(s) 607, 833
XmiI GTMKAC 2 cut(s) 165, 294
XspI CTAG 4 cut(s) 581, 1034, 1206, 1303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.