Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006276.1

Orthogroup ID

OG0007190

Physical Location & Seq

Genomic Coordinates Forward (+)

19405 .. 20532

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006276.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

atgtcggttctctgcggcgccgagtgcgtcatggtgttgggctgcacgcgctggctctggcgccgctgcacttacgtcggctccgacgacagcgccacctggcccctcgccacccccgacgagttcgagcccgtcccccgcctctgccgcttgatcctcgccgtctacgagaccgatctccacaaccctcagctcatccccaagggcggctaccgtcccaacccggacggcgtcgtcaagcgcgtcacctacgagcagacctgcggccacgcgccgccctacctcatctacgtcgaccgcgaccaccgcgacatcgtcctcgccatccgggggctcaatctggtgaaggagagcgactacaagttgctgctggataacaagctcggaatgcagatgttcgacggcggctacgtccaccatggcctcttgaagtccgccatttggttgcttaacgaggaaggcgagactctgaagcgactctggcttgagaatggacctgattacaatctggtctttgtgggtcactctttggggtctggtgtggccgcattgctgactgtgatagtggtcaatcatagggaccgattgggtgggatcccccggagtcagattcgctgttatgctctagctccggcgcgctgtatgtccttgaatttggctgtcaagtacgccgatgttatacaatcagtggtcttgcaggacgatttcttgccgagaactgcaactcccttggaagatatcttcaagtcaatcttttgcttgccgtgcttgttgtttttggtgtgtttgagagatacattcataccggaagatagaaagattagagatcccagaagactttatgcacccggtcggatgtatcatattgtagagcgcaaattttgcaggtattccaccgagaacctcagctcttatttagttagtcttaaagattatattgtatttttcactatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

318

Amino Acids

36.3

Weight (kDa)

7.94

Isoelectric Point (pI)

42.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37710 AT5G37710
fragaria_vesca	FvH4_1g30350 FvH4_1g30350 FvH4_1g30350 FvH4_1g30350 FvH4_1g30350 FvH4_1g30350
malus_domestica	MD00G1116700.v1.1 MD09G1275900.v1.1
prunus_persica	Prupe.3G016400_v2.0.a1 Prupe.3G016400_v2.0.a1 Prupe.3G016400_v2.0.a1
pyrus_communis	pycom09g18600 pycom17g26850
rosa_chinensis	RchiOBHm_Chr3g0490261
rosa_multiflora	Rmu_sc0006276.1_g000004 Rmu_sc0008723.1_g000002
rosa_roxburghii	Rroxscaffold_6G00393650
rosa_rugosa	Rorug03G0243400
rosa_samantha	Rh3AG291800 Rh3BG329100 Rh3CG325800 Rh3DG325100
rosa_wichuraiana	Rw3G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
Acc36I	ACCTGC	2 cut(s)	269, 876
AccB1I	GGYRCC	2 cut(s)	17, 60
AccI	GTMKAC	2 cut(s)	165, 294
AccII	CGCG	6 cut(s)	49, 243, 272, 300, 309, 637
AclWI	GGATC	4 cut(s)	148, 589, 602, 821
AcoI	YGGCCR	2 cut(s)	265, 543
AcsI	RAATTY	2 cut(s)	652, 878
AcuI	CTGAAG	1 cut(s)	491
AcyI	GRCGYC	3 cut(s)	18, 61, 231
AfaI	GTAC	1 cut(s)	668
AfiI	CCNNNNNNNGG	3 cut(s)	206, 330, 441
AgsI	TTSAA	3 cut(s)	430, 652, 745
AjnI	CCWGG	1 cut(s)	98
AloI	GAACNNNNNNTCC	2 cut(s)	709, 741
AluBI	AGCT	4 cut(s)	193, 382, 629, 909
AluI	AGCT	4 cut(s)	193, 382, 629, 909
Alw26I	GTCTC	2 cut(s)	164, 458
AlwI	GGATC	4 cut(s)	148, 589, 602, 821
AoxI	GGCC	4 cut(s)	101, 265, 421, 543
ApeKI	GCWGC	3 cut(s)	42, 66, 367
ApoI	RAATTY	2 cut(s)	652, 878
AspLEI	GCGC	9 cut(s)	20, 51, 63, 95, 243, 274, 637, 639, 876
AspS9I	GGNCC	3 cut(s)	102, 494, 580
AsuC2I	CCSGG	4 cut(s)	224, 329, 601, 849
AsuHPI	GGTGA	2 cut(s)	238, 355
AvaII	GGWCC	2 cut(s)	494, 580
BamHI	GGATCC	1 cut(s)	594
BanI	GGYRCC	2 cut(s)	17, 60
BanII	GRGCYC	2 cut(s)	132, 336
BbsI	GAAGAC	1 cut(s)	841
BbvCI	CCTCAGC	2 cut(s)	189, 905
BbvI	GCAGC	3 cut(s)	29, 53, 354
BccI	CCATC	1 cut(s)	332
BceAI	ACGGC	4 cut(s)	146, 244, 418, 748
BcgI	CGANNNNNNTGC	2 cut(s)	58, 92
BciT130I	CCWGG	1 cut(s)	100
BcnI	CCSGG	4 cut(s)	224, 329, 601, 849
BcoDI	GTCTC	2 cut(s)	164, 458
BfaI	CTAG	1 cut(s)	626
BfoI	RGCGCY	3 cut(s)	21, 64, 96
BfuAI	ACCTGC	2 cut(s)	269, 876
Bme1390I	CCNGG	5 cut(s)	100, 224, 329, 601, 849
Bme18I	GGWCC	2 cut(s)	494, 580
BmgT120I	GGNCC	3 cut(s)	102, 494, 580
BmiI	GGNNCC	6 cut(s)	19, 62, 82, 104, 581, 596
BmrFI	CCNGG	5 cut(s)	100, 224, 329, 601, 849
BpiI	GAAGAC	1 cut(s)	841
Bpu10I	CCTNAGC	2 cut(s)	189, 905
BpuEI	CTTGAG	1 cut(s)	506
BpuMI	CCSGG	4 cut(s)	224, 329, 601, 849
BsaBI	GATNNNNATC	1 cut(s)	504
BsaHI	GRCGYC	3 cut(s)	18, 61, 231
BsaI	GGTCTC	1 cut(s)	164
BsaJI	CCNNGG	5 cut(s)	201, 328, 418, 599, 729
BsaWI	WCCGGW	1 cut(s)	805
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 709, 739
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 330, 441
Bse3DI	GCAATG	1 cut(s)	548
Bse8I	GATNNNNATC	1 cut(s)	504
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	5 cut(s)	201, 328, 418, 599, 729
BseGI	GGATG	3 cut(s)	195, 324, 861
BseJI	GATNNNNATC	1 cut(s)	504
BseLI	CCNNNNNNNGG	3 cut(s)	206, 330, 441
BseMI	GCAATG	1 cut(s)	548
BseMII	CTCAG	2 cut(s)	203, 919
BsePI	GCGCGC	1 cut(s)	635
BseXI	GCAGC	3 cut(s)	29, 53, 354
BsgI	GTGCAG	2 cut(s)	28, 52
Bsh1236I	CGCG	6 cut(s)	49, 243, 272, 300, 309, 637
Bsh1285I	CGRYCG	2 cut(s)	298, 853
BshFI	GGCC	4 cut(s)	103, 267, 423, 545
BshNI	GGYRCC	2 cut(s)	17, 60
BsiEI	CGRYCG	2 cut(s)	298, 853
BsiSI	CCGG	6 cut(s)	224, 328, 601, 632, 806, 849
BslFI	GGGAC	3 cut(s)	119, 201, 593
BslI	CCNNNNNNNGG	3 cut(s)	206, 330, 441
BsmAI	GTCTC	2 cut(s)	164, 458
BsmFI	GGGAC	3 cut(s)	119, 201, 593
BsmI	GAATGC	1 cut(s)	393
BsnI	GGCC	4 cut(s)	103, 267, 423, 545
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	2 cut(s)	132, 336
Bsp143I	GATC	4 cut(s)	153, 175, 594, 826
Bsp19I	CCATGG	1 cut(s)	418
BspANI	GGCC	4 cut(s)	103, 267, 423, 545
BspCNI	CTCAG	2 cut(s)	202, 918
BspFNI	CGCG	6 cut(s)	49, 243, 272, 300, 309, 637
BspLI	GGNNCC	6 cut(s)	19, 62, 82, 104, 581, 596
BspMI	ACCTGC	2 cut(s)	269, 876
BspPI	GGATC	4 cut(s)	148, 589, 602, 821
BspT107I	GGYRCC	2 cut(s)	17, 60
BspTNI	GGTCTC	1 cut(s)	164
BsrDI	GCAATG	1 cut(s)	548
BssECI	CCNNGG	5 cut(s)	201, 328, 418, 599, 729
BssHII	GCGCGC	1 cut(s)	635
BssMI	GATC	4 cut(s)	153, 175, 594, 826
BssNI	GRCGYC	3 cut(s)	18, 61, 231
BssT1I	CCWWGG	3 cut(s)	201, 418, 729
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	215, 559
BstACI	GRCGYC	3 cut(s)	18, 61, 231
BstAPI	GCANNNNNTGC	1 cut(s)	882
BstC8I	GCNNGC	4 cut(s)	47, 53, 637, 761
BstDEI	CTNAG	2 cut(s)	189, 905
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	3 cut(s)	195, 324, 861
BstFNI	CGCG	6 cut(s)	49, 243, 272, 300, 309, 637
BstH2I	RGCGCY	3 cut(s)	21, 64, 96
BstHHI	GCGC	9 cut(s)	20, 51, 63, 95, 243, 274, 637, 639, 876
BstKTI	GATC	4 cut(s)	156, 178, 597, 829
BstMAI	GTCTC	2 cut(s)	164, 458
BstMBI	GATC	4 cut(s)	153, 175, 594, 826
BstMCI	CGRYCG	2 cut(s)	298, 853
BstMWI	GCNNNNNNNGC	8 cut(s)	24, 48, 147, 306, 388, 481, 765, 882
BstNI	CCWGG	1 cut(s)	100
BstSCI	CCNGG	5 cut(s)	98, 222, 327, 599, 847
BstUI	CGCG	6 cut(s)	49, 243, 272, 300, 309, 637
BstV1I	GCAGC	3 cut(s)	29, 53, 354
BstV2I	GAAGAC	1 cut(s)	841
BstX2I	RGATCY	2 cut(s)	594, 826
BstYI	RGATCY	2 cut(s)	594, 826
BsuRI	GGCC	4 cut(s)	103, 267, 423, 545
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	3 cut(s)	195, 324, 861
BtsIMutI	CAGTG	1 cut(s)	693
BveI	ACCTGC	2 cut(s)	269, 876
Cac8I	GCNNGC	4 cut(s)	47, 53, 637, 761
CfoI	GCGC	9 cut(s)	20, 51, 63, 95, 243, 274, 637, 639, 876
Cfr13I	GGNCC	3 cut(s)	102, 494, 580
CseI	GACGC	3 cut(s)	16, 220, 232
Csp6I	GTAC	1 cut(s)	667
CviAII	CATG	2 cut(s)	31, 419
CviQI	GTAC	1 cut(s)	667
DdeI	CTNAG	2 cut(s)	189, 905
DinI	GGCGCC	2 cut(s)	19, 62
DpnI	GATC	4 cut(s)	155, 177, 596, 828
DpnII	GATC	4 cut(s)	153, 175, 594, 826
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	2 cut(s)	265, 543
EciI	GGCGGA	1 cut(s)	424
Eco130I	CCWWGG	3 cut(s)	201, 418, 729
Eco24I	GRGCYC	2 cut(s)	132, 336
Eco31I	GGTCTC	1 cut(s)	164
Eco32I	GATATC	1 cut(s)	739
Eco47I	GGWCC	2 cut(s)	494, 580
Eco57I	CTGAAG	1 cut(s)	491
EcoRII	CCWGG	1 cut(s)	98
EcoRV	GATATC	1 cut(s)	739
EcoT14I	CCWWGG	3 cut(s)	201, 418, 729
EcoT38I	GRGCYC	2 cut(s)	132, 336
EgeI	GGCGCC	2 cut(s)	19, 62
EheI	GGCGCC	2 cut(s)	19, 62
ErhI	CCWWGG	3 cut(s)	201, 418, 729
FaeI	CATG	2 cut(s)	34, 422
FalI	AAGNNNNNCTT	2 cut(s)	737, 769
FaqI	GGGAC	3 cut(s)	119, 201, 593
FatI	CATG	2 cut(s)	30, 418
FauI	CCCGC	1 cut(s)	146
FblI	GTMKAC	2 cut(s)	165, 294
FokI	GGATG	3 cut(s)	182, 311, 868
FriOI	GRGCYC	2 cut(s)	132, 336
FspBI	CTAG	1 cut(s)	626
GlaI	GCGC	9 cut(s)	19, 50, 62, 94, 242, 273, 636, 638, 875
HaeII	RGCGCY	3 cut(s)	21, 64, 96
HaeIII	GGCC	4 cut(s)	103, 267, 423, 545
HapII	CCGG	6 cut(s)	224, 328, 601, 632, 806, 849
HgaI	GACGC	3 cut(s)	16, 220, 232
HhaI	GCGC	9 cut(s)	20, 51, 63, 95, 243, 274, 637, 639, 876
Hin1I	GRCGYC	3 cut(s)	18, 61, 231
Hin1II	CATG	2 cut(s)	34, 422
Hin6I	GCGC	9 cut(s)	18, 49, 61, 93, 241, 272, 635, 637, 874
HinP1I	GCGC	9 cut(s)	18, 49, 61, 93, 241, 272, 635, 637, 874
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	4 cut(s)	466, 477, 604, 610
HpaII	CCGG	6 cut(s)	224, 328, 601, 632, 806, 849
HphI	GGTGA	2 cut(s)	238, 355
Hpy166II	GTNNAC	3 cut(s)	166, 295, 415
Hpy188I	TCNGA	5 cut(s)	85, 386, 471, 609, 855
Hpy188III	TCNNGA	1 cut(s)	427
Hpy8I	GTNNAC	3 cut(s)	166, 295, 415
Hpy99I	CGWCG	6 cut(s)	80, 89, 122, 236, 296, 404
HpyAV	CCTTC	2 cut(s)	340, 452
HpyCH4III	ACNGT	2 cut(s)	215, 559
HpyCH4IV	ACGT	3 cut(s)	75, 291, 411
HpyCH4V	TGCA	7 cut(s)	45, 69, 391, 697, 722, 845, 885
HpyF10VI	GCNNNNNNNGC	8 cut(s)	24, 48, 147, 306, 388, 481, 765, 882
HpyF3I	CTNAG	2 cut(s)	189, 905
HpySE526I	ACGT	3 cut(s)	75, 291, 411
Hsp92I	GRCGYC	3 cut(s)	18, 61, 231
Hsp92II	CATG	2 cut(s)	34, 422
HspAI	GCGC	9 cut(s)	18, 49, 61, 93, 241, 272, 635, 637, 874
KasI	GGCGCC	2 cut(s)	17, 60
Kzo9I	GATC	4 cut(s)	153, 175, 594, 826
LmnI	GCTCC	2 cut(s)	86, 634
Lsp1109I	GCAGC	3 cut(s)	29, 53, 354
MaeI	CTAG	1 cut(s)	626
MaeII	ACGT	3 cut(s)	75, 291, 411
MaeIII	GTNAC	2 cut(s)	244, 521
MalI	GATC	4 cut(s)	155, 177, 596, 828
MboI	GATC	4 cut(s)	153, 175, 594, 826
MboII	GAAGA	4 cut(s)	733, 746, 821, 846
MflI	RGATCY	2 cut(s)	594, 826
MhlI	GDGCHC	2 cut(s)	132, 336
MluCI	AATT	2 cut(s)	652, 878
Mly113I	GGCGCC	2 cut(s)	18, 61
MlyI	GAGTC	3 cut(s)	460, 471, 613
MmeI	TCCRAC	2 cut(s)	108, 833
MnlI	CCTC	9 cut(s)	116, 152, 167, 198, 293, 329, 434, 448, 914
MseI	TTAA	2 cut(s)	450, 927
MspA1I	CMGCKG	1 cut(s)	66
MspI	CCGG	6 cut(s)	224, 328, 601, 632, 806, 849
MspR9I	CCNGG	5 cut(s)	100, 224, 329, 601, 849
Mva1269I	GAATGC	1 cut(s)	393
MvaI	CCWGG	1 cut(s)	100
MvnI	CGCG	6 cut(s)	49, 243, 272, 300, 309, 637
MwoI	GCNNNNNNNGC	8 cut(s)	24, 48, 147, 306, 388, 481, 765, 882
NarI	GGCGCC	2 cut(s)	18, 61
NciI	CCSGG	4 cut(s)	224, 329, 601, 849
NcoI	CCATGG	1 cut(s)	418
NdeII	GATC	4 cut(s)	153, 175, 594, 826
NlaIII	CATG	2 cut(s)	34, 422
NlaIV	GGNNCC	6 cut(s)	19, 62, 82, 104, 581, 596
NmeAIII	GCCGAG	2 cut(s)	46, 738
NmuCI	GTSAC	2 cut(s)	244, 521
PauI	GCGCGC	1 cut(s)	635
PcsI	WCGNNNNNNNCGW	8 cut(s)	81, 84, 114, 165, 240, 297, 408, 459
PctI	GAATGC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	610
PflFI	GACNNNGTC	2 cut(s)	230, 314
PleI	GAGTC	3 cut(s)	460, 471, 612
PluTI	GGCGCC	2 cut(s)	21, 64
PpsI	GAGTC	3 cut(s)	460, 471, 612
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	6 cut(s)	19, 62, 82, 104, 581, 596
PspPI	GGNCC	3 cut(s)	102, 494, 580
PsuI	RGATCY	2 cut(s)	594, 826
PsyI	GACNNNGTC	2 cut(s)	230, 314
PteI	GCGCGC	1 cut(s)	635
RsaI	GTAC	1 cut(s)	668
RsaNI	GTAC	1 cut(s)	667
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	450, 927
Sau3AI	GATC	4 cut(s)	153, 175, 594, 826
Sau96I	GGNCC	3 cut(s)	102, 494, 580
SchI	GAGTC	3 cut(s)	460, 471, 613
ScrFI	CCNGG	5 cut(s)	100, 224, 329, 601, 849
SduI	GDGCHC	2 cut(s)	132, 336
SfoI	GGCGCC	2 cut(s)	19, 62
SinI	GGWCC	2 cut(s)	494, 580
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	2 cut(s)	652, 878
SspDI	GGCGCC	2 cut(s)	17, 60
SspMI	CTAG	1 cut(s)	626
StyD4I	CCNGG	5 cut(s)	98, 222, 327, 599, 847
StyI	CCWWGG	3 cut(s)	201, 418, 729
TaaI	ACNGT	2 cut(s)	215, 559
TaiI	ACGT	3 cut(s)	78, 294, 414
TaqI	TCGA	3 cut(s)	126, 294, 399
TaqII	GACCGA	2 cut(s)	188, 597
TasI	AATT	2 cut(s)	652, 878
TauI	GCSGC	8 cut(s)	18, 66, 150, 210, 267, 277, 408, 548
TfiI	GAWTC	1 cut(s)	610
Tru1I	TTAA	2 cut(s)	450, 927
Tru9I	TTAA	2 cut(s)	450, 927
TscAI	CASTG	1 cut(s)	693
TseFI	GTSAC	2 cut(s)	244, 521
TseI	GCWGC	3 cut(s)	42, 66, 367
Tsp45I	GTSAC	2 cut(s)	244, 521
TspDTI	ATGAA	1 cut(s)	790
TspRI	CASTG	1 cut(s)	693
Tth111I	GACNNNGTC	2 cut(s)	230, 314
VpaK11BI	GGWCC	2 cut(s)	494, 580
XapI	RAATTY	2 cut(s)	652, 878
XmiI	GTMKAC	2 cut(s)	165, 294
XspI	CTAG	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.