Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005732

Physical Location & Seq

Genomic Coordinates Forward (+)

22751799 .. 22756293

Gene Structure 4495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0243400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGAGGACATAAAGAAGAGAAAGCTGGACAACAGTGAAGGAATCTCACCACATTCAGAGGAAGACTTGCGCGCCCTTCTTGACCCTCTCGCTAAGCCCCAGCTCGTCGATCTCCTAGCTAAACTGGGTTCCCAATATCCTTCAATTGCAGAGGAAATTAAGGGTATAGCCACAGCAGATCCTGTTCACCGCAAGCTTTTTGTTCGTGGGTTGGCCTGGAATACCTCTTCCGATACTTTGTGTGCTGCATTTAGTGAGCATGGAGAAATTGAGGAGGGAGCTGTCATCTATGACAAAGCCAGTGGAAAATCGCGGGGATATGGTTTCATCACTTACAAACATATGGAGTCAACTCACCATGCGCTCAGAGCTCCTAGCAAGTTAATTGATGGTCGCATGGCTGTTTGTAATTTAGCATGTGAGGGGTTAACTGGTTCAAGTTCTACCCATGATCTTACCCAGAGGAAACTCTACATTGGGGGCTTATCACCAAATGTCACTAGTGAGATGCTCCTCCACTTCTTTGGCAGGCACGGTGATATAGAAGAAGGTTCAGTTGCATATGACAAGGACACAAATGAGTCACGTGGGTTTGGCTTTGTAACATTCAAGACAGTGGAGGCTGCAAAGAAGGCCATAGACGATCCACAAAAGACCCTTGGGGGGAGAAATGTCATTGTGAAACTTGCTGATTCCCACAAAGGCAGAACAATTCAAACACAGTTACCGACACCAATGGTTCAAATGCCGTTACCTTTAGCGCCTGGATATGCACAACCTGGAAAAGCCCATCCAAGCACCGCCCCTCATGGCTATGGTTACCCTCCAGCTGTGGGACTGTACCATGATAATACTTATTCAAGTCCTCCCACAGCTCCATACCCACCACAGTCACAAATTCCGTATCCATATTACATTGGCAAACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

309

Amino Acids

33.67

Weight (kDa)

6.9

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	66 - 132	2.4e-12	RNA recognition motif
RRM_1	PF00076	157 - 224	2.3e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37478 AT5G37478 AT5G37478 AT5G37478
fragaria_vesca	FvH4_1g30340 FvH4_1g30340 FvH4_1g30340 FvH4_1g30340
malus_domestica	MD09G1276000.v1.1 MD17G1270100.v1.1
prunus_persica	Prupe.3G016300_v2.0.a1
pyrus_communis	pycom09g18620 pycom17g26860
rosa_chinensis	RchiOBHm_Chr3g0490251
rosa_laevigata	RLG00000022892
rosa_multiflora	Rmu_sc0008723.1_g000003
rosa_roxburghii	Rroxscaffold_6G00393660
rosa_rugosa	Rorug03G0243300 Rorug03G0243300 Rorug03G0243300 Rorug03G0243400 Rorug03G0243400 Rorug03G0243400
rosa_samantha	Rh3AG291700 Rh3BG329000 Rh3CG325700 Rh3DG325000
rosa_wichuraiana	Rw3G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	72, 313
AciI	CCGC	3 cut(s)	190, 313, 801
AclWI	GGATC	2 cut(s)	173, 638
AcsI	RAATTY	1 cut(s)	897
AcvI	CACGTG	1 cut(s)	587
AfaI	GTAC	1 cut(s)	842
AfiI	CCNNNNNNNGG	2 cut(s)	663, 833
AgsI	TTSAA	6 cut(s)	144, 438, 610, 716, 743, 861
AhlI	ACTAGT	1 cut(s)	500
AjnI	CCWGG	3 cut(s)	215, 763, 778
AluBI	AGCT	8 cut(s)	25, 103, 119, 196, 281, 371, 830, 875
AluI	AGCT	8 cut(s)	25, 103, 119, 196, 281, 371, 830, 875
Alw21I	GWGCWC	1 cut(s)	373
AlwI	GGATC	2 cut(s)	173, 638
AlwNI	CAGNNNCTG	1 cut(s)	182
AoxI	GGCC	2 cut(s)	213, 633
ApeKI	GCWGC	2 cut(s)	245, 623
ApoI	RAATTY	1 cut(s)	897
AspLEI	GCGC	4 cut(s)	72, 74, 364, 763
AsuHPI	GGTGA	5 cut(s)	39, 179, 347, 480, 548
BanII	GRGCYC	1 cut(s)	373
BbrPI	CACGTG	1 cut(s)	587
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	373
BbvI	GCAGC	2 cut(s)	232, 610
BccI	CCATC	2 cut(s)	383, 798
BceAI	ACGGC	1 cut(s)	733
BciT130I	CCWGG	3 cut(s)	217, 765, 780
BciVI	GTATCC	1 cut(s)	915
BcuI	ACTAGT	1 cut(s)	500
BfaI	CTAG	3 cut(s)	116, 375, 501
BfoI	RGCGCY	1 cut(s)	764
BfuI	GTATCC	1 cut(s)	915
BisI	GCNGC	2 cut(s)	246, 624
BlpI	GCTNAGC	1 cut(s)	93
BlsI	GCNGC	2 cut(s)	247, 625
Bme1390I	CCNGG	3 cut(s)	217, 765, 780
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	3 cut(s)	217, 765, 780
BmrI	ACTGGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	498
BmuI	ACTGGG	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	810
Bpu1102I	GCTNAGC	1 cut(s)	93
BsaAI	YACGTR	1 cut(s)	587
BsaJI	CCNNGG	1 cut(s)	658
Bsc4I	CCNNNNNNNGG	2 cut(s)	663, 833
Bse1I	ACTGG	3 cut(s)	129, 300, 436
BseBI	CCWGG	3 cut(s)	217, 765, 780
BseDI	CCNNGG	1 cut(s)	658
BseGI	GGATG	1 cut(s)	790
BseLI	CCNNNNNNNGG	2 cut(s)	663, 833
BseMII	CTCAG	1 cut(s)	379
BseNI	ACTGG	3 cut(s)	129, 300, 436
BsePI	GCGCGC	1 cut(s)	70
BseRI	GAGGAG	2 cut(s)	287, 503
BseXI	GCAGC	2 cut(s)	232, 610
BseYI	CCCAGC	1 cut(s)	99
Bsh1236I	CGCG	2 cut(s)	72, 313
BshFI	GGCC	2 cut(s)	215, 635
BsiHKAI	GWGCWC	1 cut(s)	373
BslFI	GGGAC	1 cut(s)	849
BslI	CCNNNNNNNGG	2 cut(s)	663, 833
BsmFI	GGGAC	1 cut(s)	849
BsnI	GGCC	2 cut(s)	215, 635
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	4 cut(s)	109, 178, 451, 643
Bsp1720I	GCTNAGC	1 cut(s)	93
BspACI	CCGC	3 cut(s)	190, 313, 801
BspANI	GGCC	2 cut(s)	215, 635
BspCNI	CTCAG	1 cut(s)	378
BspFNI	CGCG	2 cut(s)	72, 313
BspLI	GGNNCC	1 cut(s)	130
BspPI	GGATC	2 cut(s)	173, 638
BsrI	ACTGG	3 cut(s)	129, 300, 436
BssECI	CCNNGG	1 cut(s)	658
BssHII	GCGCGC	1 cut(s)	70
BssMI	GATC	4 cut(s)	109, 178, 451, 643
BssT1I	CCWWGG	1 cut(s)	658
Bst2UI	CCWGG	3 cut(s)	217, 765, 780
Bst4CI	ACNGT	6 cut(s)	35, 536, 616, 723, 840, 891
Bst6I	CTCTTC	2 cut(s)	11, 232
BstBAI	YACGTR	1 cut(s)	587
BstC8I	GCNNGC	3 cut(s)	72, 194, 530
BstDEI	CTNAG	2 cut(s)	93, 365
BstEII	GGTNACC	1 cut(s)	818
BstF5I	GGATG	1 cut(s)	790
BstFNI	CGCG	2 cut(s)	72, 313
BstH2I	RGCGCY	1 cut(s)	764
BstHHI	GCGC	4 cut(s)	72, 74, 364, 763
BstKTI	GATC	4 cut(s)	112, 181, 454, 646
BstMBI	GATC	4 cut(s)	109, 178, 451, 643
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 632
BstNI	CCWGG	3 cut(s)	217, 765, 780
BstNSI	RCATGY	1 cut(s)	420
BstPI	GGTNACC	1 cut(s)	818
BstSCI	CCNGG	3 cut(s)	215, 763, 778
BstUI	CGCG	2 cut(s)	72, 313
BstV1I	GCAGC	2 cut(s)	232, 610
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	524
BstYI	RGATCY	1 cut(s)	178
BsuI	GTATCC	1 cut(s)	915
BsuRI	GGCC	2 cut(s)	215, 635
BtsCI	GGATG	1 cut(s)	790
BtsIMutI	CAGTG	3 cut(s)	40, 307, 621
Cac8I	GCNNGC	3 cut(s)	72, 194, 530
CaiI	CAGNNNCTG	1 cut(s)	182
CfoI	GCGC	4 cut(s)	72, 74, 364, 763
Csp6I	GTAC	1 cut(s)	841
CspCI	CAANNNNNGTGG	2 cut(s)	283, 318
CviAII	CATG	7 cut(s)	260, 359, 397, 417, 449, 809, 845
CviQI	GTAC	1 cut(s)	841
DdeI	CTNAG	2 cut(s)	93, 365
DpnI	GATC	4 cut(s)	111, 180, 453, 645
DpnII	GATC	4 cut(s)	109, 178, 451, 643
Eam1104I	CTCTTC	2 cut(s)	11, 232
EarI	CTCTTC	2 cut(s)	11, 232
Ecl136II	GAGCTC	1 cut(s)	371
Eco130I	CCWWGG	1 cut(s)	658
Eco24I	GRGCYC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	371
Eco72I	CACGTG	1 cut(s)	587
Eco91I	GGTNACC	1 cut(s)	818
EcoICRI	GAGCTC	1 cut(s)	371
EcoO65I	GGTNACC	1 cut(s)	818
EcoRII	CCWGG	3 cut(s)	215, 763, 778
EcoT14I	CCWWGG	1 cut(s)	658
EcoT38I	GRGCYC	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	658
FaeI	CATG	7 cut(s)	263, 362, 400, 420, 452, 812, 848
FaqI	GGGAC	1 cut(s)	849
FatI	CATG	7 cut(s)	259, 358, 396, 416, 448, 808, 844
FauI	CCCGC	1 cut(s)	306
FauNDI	CATATG	2 cut(s)	342, 562
Fnu4HI	GCNGC	2 cut(s)	246, 624
FokI	GGATG	1 cut(s)	777
FriOI	GRGCYC	1 cut(s)	373
Fsp4HI	GCNGC	2 cut(s)	246, 624
FspBI	CTAG	3 cut(s)	116, 375, 501
GlaI	GCGC	4 cut(s)	71, 73, 363, 762
GluI	GCNGC	2 cut(s)	246, 624
GsaI	CCCAGC	1 cut(s)	103
GsuI	CTGGAG	1 cut(s)	810
HaeII	RGCGCY	1 cut(s)	764
HaeIII	GGCC	2 cut(s)	215, 635
HhaI	GCGC	4 cut(s)	72, 74, 364, 763
Hin1II	CATG	7 cut(s)	263, 362, 400, 420, 452, 812, 848
Hin6I	GCGC	4 cut(s)	70, 72, 362, 761
HinP1I	GCGC	4 cut(s)	70, 72, 362, 761
HincII	GTYRAC	2 cut(s)	351, 429
HindII	GTYRAC	2 cut(s)	351, 429
HindIII	AAGCTT	1 cut(s)	194
HinfI	GANTC	4 cut(s)	42, 347, 581, 692
HpaI	GTTAAC	1 cut(s)	429
HphI	GGTGA	5 cut(s)	39, 179, 347, 480, 548
Hpy166II	GTNNAC	3 cut(s)	187, 351, 429
Hpy188I	TCNGA	3 cut(s)	58, 232, 368
Hpy188III	TCNNGA	2 cut(s)	80, 610
Hpy8I	GTNNAC	3 cut(s)	187, 351, 429
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	5 cut(s)	32, 86, 150, 542, 625
HpyCH4III	ACNGT	6 cut(s)	35, 536, 616, 723, 840, 891
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	5 cut(s)	149, 248, 560, 626, 773
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 632
HpyF3I	CTNAG	2 cut(s)	93, 365
HpySE526I	ACGT	1 cut(s)	586
Hsp92II	CATG	7 cut(s)	263, 362, 400, 420, 452, 812, 848
HspAI	GCGC	4 cut(s)	70, 72, 362, 761
KspAI	GTTAAC	1 cut(s)	429
Kzo9I	GATC	4 cut(s)	109, 178, 451, 643
LmnI	GCTCC	4 cut(s)	278, 376, 516, 880
Lsp1109I	GCAGC	2 cut(s)	232, 610
LweI	GCATC	1 cut(s)	498
MaeI	CTAG	3 cut(s)	116, 375, 501
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	7 cut(s)	496, 582, 601, 723, 750, 818, 891
MalI	GATC	4 cut(s)	111, 180, 453, 645
MboI	GATC	4 cut(s)	109, 178, 451, 643
MboII	GAAGA	4 cut(s)	28, 74, 219, 557
MfeI	CAATTG	1 cut(s)	144
MflI	RGATCY	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	7 cut(s)	144, 156, 267, 384, 409, 711, 897
MlyI	GAGTC	2 cut(s)	356, 590
MseI	TTAA	3 cut(s)	159, 383, 428
MslI	CAYNNNNRTG	1 cut(s)	813
MspA1I	CMGCKG	1 cut(s)	830
MspR9I	CCNGG	3 cut(s)	217, 765, 780
MunI	CAATTG	1 cut(s)	144
MvaI	CCWGG	3 cut(s)	217, 765, 780
MvnI	CGCG	2 cut(s)	72, 313
MwoI	GCNNNNNNNGC	2 cut(s)	368, 632
NdeI	CATATG	2 cut(s)	342, 562
NdeII	GATC	4 cut(s)	109, 178, 451, 643
NlaIII	CATG	7 cut(s)	263, 362, 400, 420, 452, 812, 848
NlaIV	GGNNCC	1 cut(s)	130
NmuCI	GTSAC	3 cut(s)	496, 582, 891
NspI	RCATGY	1 cut(s)	420
PauI	GCGCGC	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	42, 692
PkrI	GCNGC	2 cut(s)	247, 625
PleI	GAGTC	2 cut(s)	355, 589
PmaCI	CACGTG	1 cut(s)	587
PmlI	CACGTG	1 cut(s)	587
PpsI	GAGTC	2 cut(s)	355, 589
Ppu21I	YACGTR	1 cut(s)	587
Psp124BI	GAGCTC	1 cut(s)	373
Psp6I	CCWGG	3 cut(s)	215, 763, 778
PspCI	CACGTG	1 cut(s)	587
PspEI	GGTNACC	1 cut(s)	818
PspFI	CCCAGC	1 cut(s)	99
PspGI	CCWGG	3 cut(s)	215, 763, 778
PspN4I	GGNNCC	1 cut(s)	130
PstNI	CAGNNNCTG	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	178
PteI	GCGCGC	1 cut(s)	70
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	1 cut(s)	842
RsaNI	GTAC	1 cut(s)	841
RseI	CAYNNNNRTG	1 cut(s)	813
SacI	GAGCTC	1 cut(s)	373
SaqAI	TTAA	3 cut(s)	159, 383, 428
SatI	GCNGC	2 cut(s)	246, 624
Sau3AI	GATC	4 cut(s)	109, 178, 451, 643
SchI	GAGTC	2 cut(s)	356, 590
ScrFI	CCNGG	3 cut(s)	217, 765, 780
SduI	GDGCHC	1 cut(s)	373
SfaNI	GCATC	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	813
SpeI	ACTAGT	1 cut(s)	500
Sse9I	AATT	7 cut(s)	144, 156, 267, 384, 409, 711, 897
SsiI	CCGC	3 cut(s)	190, 313, 801
SspMI	CTAG	3 cut(s)	116, 375, 501
SstI	GAGCTC	1 cut(s)	373
StyD4I	CCNGG	3 cut(s)	215, 763, 778
StyI	CCWWGG	1 cut(s)	658
TaaI	ACNGT	6 cut(s)	35, 536, 616, 723, 840, 891
TaiI	ACGT	1 cut(s)	589
TaqI	TCGA	1 cut(s)	108
TasI	AATT	7 cut(s)	144, 156, 267, 384, 409, 711, 897
TfiI	GAWTC	2 cut(s)	42, 692
Tru1I	TTAA	3 cut(s)	159, 383, 428
Tru9I	TTAA	3 cut(s)	159, 383, 428
TscAI	CASTG	3 cut(s)	40, 307, 621
TseFI	GTSAC	3 cut(s)	496, 582, 891
TseI	GCWGC	2 cut(s)	245, 623
Tsp45I	GTSAC	3 cut(s)	496, 582, 891
TspDTI	ATGAA	1 cut(s)	316
TspGWI	ACGGA	1 cut(s)	891
TspRI	CASTG	3 cut(s)	40, 307, 621
XapI	RAATTY	1 cut(s)	897
XceI	RCATGY	1 cut(s)	420
XspI	CTAG	3 cut(s)	116, 375, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.