Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005732

Physical Location & Seq

Genomic Coordinates Reverse (-)

1166974 .. 1168979

Gene Structure 2006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G016300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTTGAAGCCACACACCAAATCTACTCTTAAGTTTGTGAAGACTGCTTCTCAGTCTCCAACGAGTTCATGGAGCTCAAATTCTGGAGGAATGCCAAAATATGAAGGCAAAGAGCGTCTCCATGACAAATCTAAGTCTTCTCAGAAGTCTCCTACAAAAGAAAATACCAAACCTCAGGAAATTAGACTCCACACTCAACAAAGAGCAACCAGACGAGCAACGTTCAACTACATGGTTGCAGCCAAGCTGAGCATCTTGGAGCAGCGGAGAAAACAAGAAGAGATGTTGCAGAAGATGATAGAAGAGGAAGAGATTCGCTTACTGAGAAAGGAGATGGTTCCAAGGGCTCAATTGATGCCCCATTTTGACAGACCTTTCGTTCCCCAAAGATCAAGAAGGCCCTTGACAGTTCCTAGGGAACCAAGTTTCATGAGCAGCAAGTGCTTCGGCTGCAACTCTAGCAGTGGCTTCTACAATTTCCAGCACACAACTCAAGCTATGAACCCCATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

172

Amino Acids

19.9

Weight (kDa)

10.34

Isoelectric Point (pI)

80.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37478 AT5G37478 AT5G37478 AT5G37478
fragaria_vesca	FvH4_1g30340 FvH4_1g30340 FvH4_1g30340 FvH4_1g30340
malus_domestica	MD09G1276000.v1.1 MD17G1270100.v1.1
prunus_persica	Prupe.3G016300_v2.0.a1
pyrus_communis	pycom09g18620 pycom17g26860
rosa_chinensis	RchiOBHm_Chr3g0490251
rosa_laevigata	RLG00000022892
rosa_multiflora	Rmu_sc0008723.1_g000003
rosa_roxburghii	Rroxscaffold_6G00393660
rosa_rugosa	Rorug03G0243300 Rorug03G0243300 Rorug03G0243300 Rorug03G0243400 Rorug03G0243400 Rorug03G0243400
rosa_samantha	Rh3AG291700 Rh3BG329000 Rh3CG325700 Rh3DG325000
rosa_wichuraiana	Rw3G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	265
AclI	AACGTT	1 cut(s)	221
AcsI	RAATTY	1 cut(s)	79
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	2 cut(s)	7, 226
AluBI	AGCT	3 cut(s)	75, 247, 497
AluI	AGCT	3 cut(s)	75, 247, 497
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	3 cut(s)	60, 122, 153
AoxI	GGCC	1 cut(s)	398
ApeKI	GCWGC	4 cut(s)	239, 262, 435, 450
ApoI	RAATTY	1 cut(s)	79
ArsI	GACNNNNNNTTYG	2 cut(s)	359, 391
Asp700I	GAANNNNTTC	1 cut(s)	312
AspA2I	CCTAGG	1 cut(s)	413
AspS9I	GGNCC	1 cut(s)	399
AvrII	CCTAGG	1 cut(s)	413
AxyI	CCTNAGG	1 cut(s)	174
BanII	GRGCYC	2 cut(s)	77, 349
BbsI	GAAGAC	2 cut(s)	47, 129
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	4 cut(s)	251, 274, 437, 447
BccI	CCATC	2 cut(s)	328, 515
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BcoDI	GTCTC	3 cut(s)	60, 122, 153
BfaI	CTAG	2 cut(s)	414, 459
BfrI	CTTAAG	1 cut(s)	29
BisI	GCNGC	4 cut(s)	240, 263, 436, 451
BlnI	CCTAGG	1 cut(s)	413
BlpI	GCTNAGC	1 cut(s)	248
BlsI	GCNGC	4 cut(s)	241, 264, 437, 452
BmgT120I	GGNCC	1 cut(s)	399
BmiI	GGNNCC	2 cut(s)	339, 420
BmsI	GCATC	2 cut(s)	261, 345
BpiI	GAAGAC	2 cut(s)	47, 129
BpmI	CTGGAG	1 cut(s)	105
Bpu1102I	GCTNAGC	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	477
BsaJI	CCNNGG	2 cut(s)	341, 413
Bse21I	CCTNAGG	1 cut(s)	174
BseDI	CCNNGG	2 cut(s)	341, 413
BseMII	CTCAG	5 cut(s)	65, 155, 188, 239, 314
BseXI	GCAGC	4 cut(s)	251, 274, 437, 447
BshFI	GGCC	1 cut(s)	400
BsiHKAI	GWGCWC	1 cut(s)	77
BsmAI	GTCTC	3 cut(s)	60, 122, 153
BsmBI	CGTCTC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	96
BsnI	GGCC	1 cut(s)	400
Bsp1286I	GDGCHC	2 cut(s)	77, 349
Bsp143I	GATC	1 cut(s)	389
Bsp1720I	GCTNAGC	1 cut(s)	248
BspACI	CCGC	1 cut(s)	265
BspANI	GGCC	1 cut(s)	400
BspCNI	CTCAG	5 cut(s)	64, 154, 187, 240, 315
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	339, 420
BspTI	CTTAAG	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	341, 413
BssMI	GATC	1 cut(s)	389
BssT1I	CCWWGG	2 cut(s)	341, 413
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	3 cut(s)	273, 297, 303
BstAFI	CTTAAG	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstDEI	CTNAG	6 cut(s)	51, 132, 141, 174, 248, 323
BstKTI	GATC	1 cut(s)	392
BstMAI	GTCTC	3 cut(s)	60, 122, 153
BstMBI	GATC	1 cut(s)	389
BstMWI	GCNNNNNNNGC	3 cut(s)	441, 450, 459
BstV1I	GCAGC	4 cut(s)	251, 274, 437, 447
BstV2I	GAAGAC	2 cut(s)	47, 129
Bsu36I	CCTNAGG	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	400
BtsI	GCAGTG	1 cut(s)	469
BtsIMutI	CAGTG	1 cut(s)	469
CciI	TCATGA	1 cut(s)	429
Cfr13I	GGNCC	1 cut(s)	399
CseI	GACGC	1 cut(s)	104
CviAII	CATG	4 cut(s)	69, 122, 232, 430
CviJI	RGCY	9 cut(s)	10, 75, 242, 247, 347, 400, 450, 468, 497
CviKI_1	RGCY	9 cut(s)	10, 75, 242, 247, 347, 400, 450, 468, 497
DdeI	CTNAG	6 cut(s)	51, 132, 141, 174, 248, 323
DpnI	GATC	1 cut(s)	391
DpnII	GATC	1 cut(s)	389
Eam1104I	CTCTTC	3 cut(s)	273, 297, 303
EarI	CTCTTC	3 cut(s)	273, 297, 303
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	2 cut(s)	341, 413
Eco24I	GRGCYC	2 cut(s)	77, 349
Eco53kI	GAGCTC	1 cut(s)	75
Eco81I	CCTNAGG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	399
EcoT14I	CCWWGG	2 cut(s)	341, 413
EcoT38I	GRGCYC	2 cut(s)	77, 349
ErhI	CCWWGG	2 cut(s)	341, 413
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	4 cut(s)	72, 125, 235, 433
FaiI	YATR	6 cut(s)	70, 102, 123, 233, 431, 500
FatI	CATG	4 cut(s)	68, 121, 231, 429
Fnu4HI	GCNGC	4 cut(s)	240, 263, 436, 451
FriOI	GRGCYC	2 cut(s)	77, 349
Fsp4HI	GCNGC	4 cut(s)	240, 263, 436, 451
FspBI	CTAG	2 cut(s)	414, 459
GluI	GCNGC	4 cut(s)	240, 263, 436, 451
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	1 cut(s)	400
HgaI	GACGC	1 cut(s)	104
Hin1II	CATG	4 cut(s)	72, 125, 235, 433
HinfI	GANTC	2 cut(s)	186, 313
Hpy188I	TCNGA	1 cut(s)	144
Hpy188III	TCNNGA	4 cut(s)	84, 176, 393, 430
HpyAV	CCTTC	2 cut(s)	98, 390
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	221
HpyCH4V	TGCA	3 cut(s)	239, 289, 453
HpyF10VI	GCNNNNNNNGC	3 cut(s)	441, 450, 459
HpyF3I	CTNAG	6 cut(s)	51, 132, 141, 174, 248, 323
HpySE526I	ACGT	1 cut(s)	221
Hsp92II	CATG	4 cut(s)	72, 125, 235, 433
Kzo9I	GATC	1 cut(s)	389
LmnI	GCTCC	2 cut(s)	72, 259
LpnPI	CCDG	4 cut(s)	69, 161, 223, 494
Lsp1109I	GCAGC	4 cut(s)	251, 274, 437, 447
LweI	GCATC	2 cut(s)	261, 345
MaeI	CTAG	2 cut(s)	414, 459
MaeII	ACGT	1 cut(s)	221
MalI	GATC	1 cut(s)	391
MboI	GATC	1 cut(s)	389
MboII	GAAGA	6 cut(s)	52, 129, 290, 304, 314, 320
MfeI	CAATTG	1 cut(s)	350
MhlI	GDGCHC	2 cut(s)	77, 349
MluCI	AATT	4 cut(s)	79, 180, 350, 475
MlyI	GAGTC	1 cut(s)	180
MmeI	TCCRAC	1 cut(s)	83
MnlI	CCTC	3 cut(s)	80, 183, 298
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	265
MspCI	CTTAAG	1 cut(s)	29
MunI	CAATTG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	96
MwoI	GCNNNNNNNGC	3 cut(s)	441, 450, 459
NdeII	GATC	1 cut(s)	389
NlaIII	CATG	4 cut(s)	72, 125, 235, 433
NlaIV	GGNNCC	2 cut(s)	339, 420
PagI	TCATGA	1 cut(s)	429
PctI	GAATGC	1 cut(s)	96
PdmI	GAANNNNTTC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	313
PkrI	GCNGC	4 cut(s)	241, 264, 437, 452
PleI	GAGTC	1 cut(s)	180
PpsI	GAGTC	1 cut(s)	180
Psp124BI	GAGCTC	1 cut(s)	77
Psp1406I	AACGTT	1 cut(s)	221
PspN4I	GGNNCC	2 cut(s)	339, 420
PspPI	GGNCC	1 cut(s)	399
SacI	GAGCTC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	4 cut(s)	240, 263, 436, 451
Sau3AI	GATC	1 cut(s)	389
Sau96I	GGNCC	1 cut(s)	399
SchI	GAGTC	1 cut(s)	180
SduI	GDGCHC	2 cut(s)	77, 349
SetI	ASST	6 cut(s)	77, 175, 224, 249, 376, 499
SfaNI	GCATC	2 cut(s)	261, 345
SmlI	CTYRAG	2 cut(s)	29, 492
SmoI	CTYRAG	2 cut(s)	29, 492
Sse9I	AATT	4 cut(s)	79, 180, 350, 475
SsiI	CCGC	1 cut(s)	265
SspMI	CTAG	2 cut(s)	414, 459
SstI	GAGCTC	1 cut(s)	77
StyI	CCWWGG	2 cut(s)	341, 413
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	1 cut(s)	224
TasI	AATT	4 cut(s)	79, 180, 350, 475
TfiI	GAWTC	1 cut(s)	313
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	469
TseI	GCWGC	4 cut(s)	239, 262, 435, 450
TspDTI	ATGAA	4 cut(s)	57, 117, 418, 515
TspRI	CASTG	1 cut(s)	469
Vha464I	CTTAAG	1 cut(s)	29
XapI	RAATTY	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	66
XmaJI	CCTAGG	1 cut(s)	413
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	2 cut(s)	414, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.