Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005732

Physical Location & Seq

Genomic Coordinates Forward (+)

22735702 .. 22739449

Gene Structure 3748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0243300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAACGAGCAAAAGATAGAGTGCCAGGAACGAATACATCAACACAGCCATGGACTAATTAGTGATCCTAACTTTGAACTTGGTAGTCATTCTTCTAACCAGCTCTTGGGTCTGCAACAACAGCCTTGGAACATGGAAGTTTGGCTTCAGCAACCCACCATGGATCAGGGAGTGTCACAGCTTCAAAATATTGGGCCTGCAAAATCACCAAGCAGCATTATGAGCCGATTTGAATCACCGGCTTCGGCTTTCTATGCAACGGAAATATGCATGGGATTTCCTTCGCACTATGAGTCTCAAGTTGTTGGTAATCCTAATCCTCCCCAGTTCCCTTCAGGCCAATCATATGAGGAAAGCTACTCAATGGAATCATCAGAGGACATCAGAAATACCTTGCAATCAATTGTGAAATCCCAAACCAACAGCTCTCAATCTTATAAATCCTCTGAGAAGTCTAATCAAATCCCAAGCAACCATTTGCCAGGCAGTAAGCTCTTTCTGCATCAACAAATGCATCAAGATAGTACTAGTGGCTCAGTTAGGAGACCCTTTTCACTTGCTTTCAAAGAAAATCAGGAACAAGTGAGCTTCTTTTCTCAGCAAGCAAAGCAGTCTCCAAGAACTTCCTCAGGAACGGTTTCTGCAACCTCTGGTGATTCTTCTTCAACCAGCCCATCACTCTCGAGTAAAACACGAATACGATGGAATCAAGATCTTCACGAGAAGTTTGTTGAGTGTGTCAATCGTCTTGGGGGTGCTGACAAAGCAACACCTAAGGCAATACTGAAGATGATGGGATTGGAGGGACTAACCATCTTTCATGTCAAAAGTCATCTGCAGAAATATCGAATCGCAAAATATTTGCCAGACTCTGCAGAAGGAAAATCTGAGAAAAGAGCTAATGTGAATGTCGAACCTCAGCTTGATGTGAAAACTGGCTTGCAAATCAAAGAGGCACTGCAACTACAACTAGATGTCCAGAGGCAACTTCACGAACAACTAGAGATTCAGCGAAATTTACAGTTGCGCATTGAAGAACAAGGGGAGCGGCTCAAGAAAATGTTTGACCAGCAGCAAAAAACAAGTGATAGCATGTTAAAGACTCCAAACGTGGATTTTACATGCCATGAAAATGGTCCATCAGATAATGAAATTCAAGTTTCAAGTCCTGAAGGTTCTGGGAATTCCCACTTCCCATCCAAGATAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Usp

Protein Analysis

403

Amino Acids

45.2

Weight (kDa)

6.4

Isoelectric Point (pI)

73.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	234 - 283	3.3e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	314 - 361	1.8e-18	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37478 AT5G37478 AT5G37478 AT5G37478
fragaria_vesca	FvH4_1g30340 FvH4_1g30340 FvH4_1g30340 FvH4_1g30340
malus_domestica	MD09G1276000.v1.1 MD17G1270100.v1.1
prunus_persica	Prupe.3G016300_v2.0.a1
pyrus_communis	pycom09g18620 pycom17g26860
rosa_chinensis	RchiOBHm_Chr3g0490251
rosa_laevigata	RLG00000022892
rosa_multiflora	Rmu_sc0008723.1_g000003
rosa_roxburghii	Rroxscaffold_6G00393660
rosa_rugosa	Rorug03G0243300 Rorug03G0243300 Rorug03G0243300 Rorug03G0243400 Rorug03G0243400 Rorug03G0243400
rosa_samantha	Rh3AG291700 Rh3BG329000 Rh3CG325700 Rh3DG325000
rosa_wichuraiana	Rw3G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	438
Acc16I	TGCGCA	1 cut(s)	1028
AccB7I	CCANNNNNTGG	1 cut(s)	106
AccBSI	CCGCTC	1 cut(s)	1048
AciI	CCGC	1 cut(s)	1048
AclWI	GGATC	2 cut(s)	59, 171
AcsI	RAATTY	3 cut(s)	1015, 1152, 1183
AcuI	CTGAAG	4 cut(s)	131, 318, 806, 1191
AfaI	GTAC	1 cut(s)	526
AfiI	CCNNNNNNNGG	1 cut(s)	106
AgsI	TTSAA	8 cut(s)	77, 185, 233, 565, 666, 1034, 1157, 1164
AhlI	ACTAGT	1 cut(s)	527
AjnI	CCWGG	2 cut(s)	24, 481
AluBI	AGCT	8 cut(s)	103, 181, 357, 426, 493, 588, 899, 922
AluI	AGCT	8 cut(s)	103, 181, 357, 426, 493, 588, 899, 922
Alw26I	GTCTC	3 cut(s)	300, 538, 618
AlwI	GGATC	2 cut(s)	59, 171
AlwNI	CAGNNNCTG	1 cut(s)	872
Ama87I	CYCGRG	1 cut(s)	682
AoxI	GGCC	2 cut(s)	194, 337
ApeKI	GCWGC	2 cut(s)	213, 1072
ApoI	RAATTY	3 cut(s)	1015, 1152, 1183
Asp700I	GAANNNNTTC	1 cut(s)	637
AspLEI	GCGC	1 cut(s)	1029
AspS9I	GGNCC	2 cut(s)	194, 1136
AsuHPI	GGTGA	3 cut(s)	198, 228, 665
AvaI	CYCGRG	1 cut(s)	682
AvaII	GGWCC	1 cut(s)	1136
AxyI	CCTNAGG	2 cut(s)	628, 774
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
BauI	CACGAG	1 cut(s)	719
BbvCI	CCTCAGC	1 cut(s)	918
BbvI	GCAGC	2 cut(s)	225, 1084
BccI	CCATC	6 cut(s)	682, 696, 787, 821, 1147, 1204
BcgI	CGANNNNNNTGC	2 cut(s)	827, 861
BciT130I	CCWGG	2 cut(s)	26, 483
BcoDI	GTCTC	3 cut(s)	300, 538, 618
BcuI	ACTAGT	1 cut(s)	527
BfaI	CTAG	3 cut(s)	528, 971, 1001
BfmI	CTRYAG	2 cut(s)	836, 873
BglII	AGATCT	1 cut(s)	712
BisI	GCNGC	3 cut(s)	214, 1049, 1073
BlsI	GCNGC	3 cut(s)	215, 1050, 1074
BmcAI	AGTACT	1 cut(s)	526
Bme1390I	CCNGG	2 cut(s)	26, 483
Bme18I	GGWCC	1 cut(s)	1136
BmeT110I	CYCGRG	1 cut(s)	682
BmgT120I	GGNCC	2 cut(s)	194, 1136
BmrFI	CCNGG	2 cut(s)	26, 483
BmrI	ACTGGG	1 cut(s)	319
BmsI	GCATC	2 cut(s)	511, 523
BmuI	ACTGGG	1 cut(s)	319
Bpu10I	CCTNAGC	1 cut(s)	918
BpuEI	CTTGAG	2 cut(s)	282, 1037
BsaBI	GATNNNNATC	1 cut(s)	232
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	3 cut(s)	49, 125, 159
Bsc4I	CCNNNNNNNGG	1 cut(s)	106
Bse118I	RCCGGY	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	325, 940
Bse21I	CCTNAGG	2 cut(s)	628, 774
Bse8I	GATNNNNATC	1 cut(s)	232
BseBI	CCWGG	2 cut(s)	26, 483
BseDI	CCNNGG	3 cut(s)	49, 125, 159
BseGI	GGATG	1 cut(s)	1196
BseJI	GATNNNNATC	1 cut(s)	232
BseLI	CCNNNNNNNGG	1 cut(s)	106
BseMII	CTCAG	6 cut(s)	438, 549, 611, 642, 879, 932
BseNI	ACTGG	2 cut(s)	325, 940
BseXI	GCAGC	2 cut(s)	225, 1084
BshFI	GGCC	2 cut(s)	196, 339
BsiHKCI	CYCGRG	1 cut(s)	682
BsiSI	CCGG	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	819
BslI	CCNNNNNNNGG	1 cut(s)	106
BsmAI	GTCTC	3 cut(s)	300, 538, 618
BsmFI	GGGAC	1 cut(s)	819
BsnI	GGCC	2 cut(s)	196, 339
Bso31I	GGTCTC	1 cut(s)	538
BsoBI	CYCGRG	1 cut(s)	682
Bsp143I	GATC	3 cut(s)	64, 163, 712
Bsp19I	CCATGG	2 cut(s)	49, 159
BspACI	CCGC	1 cut(s)	1048
BspANI	GGCC	2 cut(s)	196, 339
BspCNI	CTCAG	6 cut(s)	439, 548, 610, 641, 880, 931
BspMAI	CTGCAG	2 cut(s)	840, 877
BspPI	GGATC	2 cut(s)	59, 171
BspTNI	GGTCTC	1 cut(s)	538
BsrBI	CCGCTC	1 cut(s)	1048
BsrFI	RCCGGY	1 cut(s)	238
BsrI	ACTGG	2 cut(s)	325, 940
BssAI	RCCGGY	1 cut(s)	238
BssECI	CCNNGG	3 cut(s)	49, 125, 159
BssMI	GATC	3 cut(s)	64, 163, 712
BssSI	CACGAG	1 cut(s)	719
BssT1I	CCWWGG	3 cut(s)	49, 125, 159
Bst2BI	CACGAG	1 cut(s)	719
Bst2UI	CCWGG	2 cut(s)	26, 483
Bst4CI	ACNGT	2 cut(s)	637, 1023
BstC8I	GCNNGC	3 cut(s)	198, 603, 941
BstDEI	CTNAG	7 cut(s)	447, 535, 597, 628, 774, 888, 918
BstDSI	CCRYGG	2 cut(s)	49, 159
BstF5I	GGATG	1 cut(s)	1196
BstHHI	GCGC	1 cut(s)	1029
BstKTI	GATC	3 cut(s)	67, 166, 715
BstMAI	GTCTC	3 cut(s)	300, 538, 618
BstMBI	GATC	3 cut(s)	64, 163, 712
BstMWI	GCNNNNNNNGC	6 cut(s)	121, 222, 254, 499, 607, 764
BstNI	CCWGG	2 cut(s)	26, 483
BstNSI	RCATGY	2 cut(s)	1096, 1125
BstSCI	CCNGG	2 cut(s)	24, 481
BstSFI	CTRYAG	2 cut(s)	836, 873
BstV1I	GCAGC	2 cut(s)	225, 1084
BstX2I	RGATCY	1 cut(s)	712
BstXI	CCANNNNNNTGG	1 cut(s)	1133
BstYI	RGATCY	1 cut(s)	712
Bsu36I	CCTNAGG	2 cut(s)	628, 774
BsuRI	GGCC	2 cut(s)	196, 339
BtgI	CCRYGG	2 cut(s)	49, 159
BtsCI	GGATG	1 cut(s)	1196
BtsI	GCAGTG	1 cut(s)	956
BtsIMutI	CAGTG	1 cut(s)	956
Cac8I	GCNNGC	3 cut(s)	198, 603, 941
CaiI	CAGNNNCTG	1 cut(s)	872
CfoI	GCGC	1 cut(s)	1029
Cfr10I	RCCGGY	1 cut(s)	238
Cfr13I	GGNCC	2 cut(s)	194, 1136
Csp6I	GTAC	1 cut(s)	525
CviAII	CATG	8 cut(s)	50, 133, 160, 271, 821, 1093, 1122, 1127
CviQI	GTAC	1 cut(s)	525
DdeI	CTNAG	7 cut(s)	447, 535, 597, 628, 774, 888, 918
DpnI	GATC	3 cut(s)	66, 165, 714
DpnII	GATC	3 cut(s)	64, 163, 712
Eco130I	CCWWGG	3 cut(s)	49, 125, 159
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	1 cut(s)	1136
Eco57I	CTGAAG	4 cut(s)	131, 318, 806, 1191
Eco81I	CCTNAGG	2 cut(s)	628, 774
Eco88I	CYCGRG	1 cut(s)	682
EcoRI	GAATTC	1 cut(s)	1183
EcoRII	CCWGG	2 cut(s)	24, 481
EcoT14I	CCWWGG	3 cut(s)	49, 125, 159
EcoT22I	ATGCAT	2 cut(s)	272, 516
ErhI	CCWWGG	3 cut(s)	49, 125, 159
FaeI	CATG	8 cut(s)	53, 136, 163, 274, 824, 1096, 1125, 1130
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FaqI	GGGAC	1 cut(s)	819
FatI	CATG	8 cut(s)	49, 132, 159, 270, 820, 1092, 1121, 1126
FauNDI	CATATG	1 cut(s)	346
Fnu4HI	GCNGC	3 cut(s)	214, 1049, 1073
FokI	GGATG	1 cut(s)	1183
Fsp4HI	GCNGC	3 cut(s)	214, 1049, 1073
FspBI	CTAG	3 cut(s)	528, 971, 1001
FspI	TGCGCA	1 cut(s)	1028
GlaI	GCGC	1 cut(s)	1028
GluI	GCNGC	3 cut(s)	214, 1049, 1073
HaeIII	GGCC	2 cut(s)	196, 339
HapII	CCGG	1 cut(s)	239
HhaI	GCGC	1 cut(s)	1029
Hin1II	CATG	8 cut(s)	53, 136, 163, 274, 824, 1096, 1125, 1130
Hin6I	GCGC	1 cut(s)	1027
HinP1I	GCGC	1 cut(s)	1027
HinfI	GANTC	9 cut(s)	233, 293, 368, 656, 706, 849, 869, 1006, 1102
HpaII	CCGG	1 cut(s)	239
HphI	GGTGA	3 cut(s)	198, 228, 665
Hpy188I	TCNGA	5 cut(s)	376, 386, 448, 889, 1144
HpyAV	CCTTC	4 cut(s)	291, 342, 872, 1166
HpyCH4III	ACNGT	2 cut(s)	637, 1023
HpyCH4IV	ACGT	1 cut(s)	1110
HpyF10VI	GCNNNNNNNGC	6 cut(s)	121, 222, 254, 499, 607, 764
HpyF3I	CTNAG	7 cut(s)	447, 535, 597, 628, 774, 888, 918
HpySE526I	ACGT	1 cut(s)	1110
Hsp92II	CATG	8 cut(s)	53, 136, 163, 274, 824, 1096, 1125, 1130
HspAI	GCGC	1 cut(s)	1027
Kzo9I	GATC	3 cut(s)	64, 163, 712
LmnI	GCTCC	1 cut(s)	1045
Lsp1109I	GCAGC	2 cut(s)	225, 1084
LweI	GCATC	2 cut(s)	511, 523
MaeI	CTAG	3 cut(s)	528, 971, 1001
MaeII	ACGT	1 cut(s)	1110
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	3 cut(s)	66, 165, 714
MbiI	CCGCTC	1 cut(s)	1048
MboI	GATC	3 cut(s)	64, 163, 712
MboII	GAAGA	6 cut(s)	84, 651, 654, 707, 799, 1046
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	1 cut(s)	712
MluCI	AATT	5 cut(s)	57, 402, 1015, 1152, 1183
MlyI	GAGTC	3 cut(s)	302, 863, 1096
Mph1103I	ATGCAT	2 cut(s)	272, 516
MroXI	GAANNNNTTC	1 cut(s)	637
MseI	TTAA	1 cut(s)	1097
MslI	CAYNNNNRTG	2 cut(s)	48, 1131
MspI	CCGG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	26, 483
MunI	CAATTG	1 cut(s)	402
MvaI	CCWGG	2 cut(s)	26, 483
MwoI	GCNNNNNNNGC	6 cut(s)	121, 222, 254, 499, 607, 764
NcoI	CCATGG	2 cut(s)	49, 159
NdeI	CATATG	1 cut(s)	346
NdeII	GATC	3 cut(s)	64, 163, 712
NlaIII	CATG	8 cut(s)	53, 136, 163, 274, 824, 1096, 1125, 1130
NmuCI	GTSAC	1 cut(s)	174
NsbI	TGCGCA	1 cut(s)	1028
NsiI	ATGCAT	2 cut(s)	272, 516
NspI	RCATGY	2 cut(s)	1096, 1125
PaeR7I	CTCGAG	1 cut(s)	682
PdmI	GAANNNNTTC	1 cut(s)	637
PfeI	GAWTC	6 cut(s)	233, 368, 656, 706, 849, 1006
PflMI	CCANNNNNTGG	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	215, 1050, 1074
PleI	GAGTC	3 cut(s)	301, 863, 1096
PpsI	GAGTC	3 cut(s)	301, 863, 1096
PsiI	TTATAA	1 cut(s)	438
Psp6I	CCWGG	2 cut(s)	24, 481
PspGI	CCWGG	2 cut(s)	24, 481
PspPI	GGNCC	2 cut(s)	194, 1136
PstI	CTGCAG	2 cut(s)	840, 877
PstNI	CAGNNNCTG	1 cut(s)	872
PsuI	RGATCY	1 cut(s)	712
RsaI	GTAC	1 cut(s)	526
RsaNI	GTAC	1 cut(s)	525
RseI	CAYNNNNRTG	2 cut(s)	48, 1131
SaqAI	TTAA	1 cut(s)	1097
SatI	GCNGC	3 cut(s)	214, 1049, 1073
Sau3AI	GATC	3 cut(s)	64, 163, 712
Sau96I	GGNCC	2 cut(s)	194, 1136
ScaI	AGTACT	1 cut(s)	526
SchI	GAGTC	3 cut(s)	302, 863, 1096
ScrFI	CCNGG	2 cut(s)	26, 483
SfaNI	GCATC	2 cut(s)	511, 523
SfcI	CTRYAG	2 cut(s)	836, 873
Sfr274I	CTCGAG	1 cut(s)	682
SinI	GGWCC	1 cut(s)	1136
SlaI	CTCGAG	1 cut(s)	682
SmiMI	CAYNNNNRTG	2 cut(s)	48, 1131
SmlI	CTYRAG	3 cut(s)	297, 682, 1052
SmoI	CTYRAG	3 cut(s)	297, 682, 1052
SpeI	ACTAGT	1 cut(s)	527
Sse9I	AATT	5 cut(s)	57, 402, 1015, 1152, 1183
SsiI	CCGC	1 cut(s)	1048
SspI	AATATT	2 cut(s)	190, 860
SspMI	CTAG	3 cut(s)	528, 971, 1001
StyD4I	CCNGG	2 cut(s)	24, 481
StyI	CCWWGG	3 cut(s)	49, 125, 159
TaaI	ACNGT	2 cut(s)	637, 1023
TaiI	ACGT	1 cut(s)	1113
TaqI	TCGA	3 cut(s)	683, 847, 912
TasI	AATT	5 cut(s)	57, 402, 1015, 1152, 1183
TatI	WGTACW	1 cut(s)	524
TauI	GCSGC	1 cut(s)	1051
TfiI	GAWTC	6 cut(s)	233, 368, 656, 706, 849, 1006
Tru1I	TTAA	1 cut(s)	1097
Tru9I	TTAA	1 cut(s)	1097
TscAI	CASTG	1 cut(s)	963
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	2 cut(s)	213, 1072
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	4 cut(s)	17, 809, 1143, 1164
TspGWI	ACGGA	1 cut(s)	275
TspRI	CASTG	1 cut(s)	963
Van91I	CCANNNNNTGG	1 cut(s)	106
VpaK11BI	GGWCC	1 cut(s)	1136
XapI	RAATTY	3 cut(s)	1015, 1152, 1183
XceI	RCATGY	2 cut(s)	1096, 1125
XhoI	CTCGAG	1 cut(s)	682
XmnI	GAANNNNTTC	1 cut(s)	637
XspI	CTAG	3 cut(s)	528, 971, 1001
ZrmI	AGTACT	1 cut(s)	526
Zsp2I	ATGCAT	2 cut(s)	272, 516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.