Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005732

Physical Location & Seq

Genomic Coordinates Forward (+)

25164517 .. 25167274

Gene Structure 2758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g26860.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTTGCAACCGAAACAAACAATAAGCACCCACAGTTTTTTTCATTTGAGCTCATATCATCTATTTATATTTATGGAGAAGGCACACTCCAAATCTACTCTTAAGTTTGTGAAGAGTGCTTCACAGTCTACAACAGGTTCATGGAGCTCGAATTCTGAAGGAGCGCCAAAAGATGAATTCAAGGACAAATCAAAGTCTTGTCAAAAGTCTCCAACAAGGGAAAATACCAAAGCTCAAGAAGTTAAACTTCACACTAAAGAAAGAGCTACCAAAAGAGCAATGTTCAACTACATGGTTGCAACCAAGCTGAGTATCTTGGAGCACCAGAGAAAACAAGAAGAGAGGTTGCAGAAGATGATAGAAGAGGAAGAGATTCGCTTACTGAGAAAGGAGATGGTTCCAAGGGCTCGATTGATGCCTTTTTTCGATAGACCTTTCATTCCACAAAGATCAAGCAGGCCCTTGACGATTCCTAGGGAACCAAGTTTCCGCAAGTACTTAAGCTGCAACCCTGGCAGTCAACTCTACAATTTCCAACCGACAACTCGAGCTACGAATCCCATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

190

Amino Acids

22.14

Weight (kDa)

10.14

Isoelectric Point (pI)

58.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37478 AT5G37478 AT5G37478 AT5G37478
fragaria_vesca	FvH4_1g30340 FvH4_1g30340 FvH4_1g30340 FvH4_1g30340
malus_domestica	MD09G1276000.v1.1 MD17G1270100.v1.1
prunus_persica	Prupe.3G016300_v2.0.a1
pyrus_communis	pycom09g18620 pycom17g26860
rosa_chinensis	RchiOBHm_Chr3g0490251
rosa_laevigata	RLG00000022892
rosa_multiflora	Rmu_sc0008723.1_g000003
rosa_roxburghii	Rroxscaffold_6G00393660
rosa_rugosa	Rorug03G0243300 Rorug03G0243300 Rorug03G0243300 Rorug03G0243400 Rorug03G0243400 Rorug03G0243400
rosa_samantha	Rh3AG291700 Rh3BG329000 Rh3CG325700 Rh3DG325000
rosa_wichuraiana	Rw3G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	128
AciI	CCGC	1 cut(s)	490
AcsI	RAATTY	2 cut(s)	151, 176
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	1 cut(s)	497
AflII	CTTAAG	2 cut(s)	101, 499
AgsI	TTSAA	2 cut(s)	181, 286
AjnI	CCWGG	1 cut(s)	511
AloI	GAACNNNNNNTCC	2 cut(s)	471, 503
AluBI	AGCT	7 cut(s)	51, 147, 233, 266, 307, 504, 551
AluI	AGCT	7 cut(s)	51, 147, 233, 266, 307, 504, 551
Alw21I	GWGCWC	3 cut(s)	53, 149, 324
Alw26I	GTCTC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	546
AoxI	GGCC	1 cut(s)	458
ApeKI	GCWGC	1 cut(s)	504
ApoI	RAATTY	2 cut(s)	151, 176
Asp700I	GAANNNNTTC	1 cut(s)	372
AspA2I	CCTAGG	1 cut(s)	473
AspLEI	GCGC	1 cut(s)	166
AspS9I	GGNCC	1 cut(s)	459
AvaI	CYCGRG	1 cut(s)	546
AvrII	CCTAGG	1 cut(s)	473
BanII	GRGCYC	3 cut(s)	53, 149, 409
Bbv12I	GWGCWC	3 cut(s)	53, 149, 324
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	2 cut(s)	388, 569
BciT130I	CCWGG	1 cut(s)	513
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	167
BfrI	CTTAAG	2 cut(s)	101, 499
BisI	GCNGC	1 cut(s)	505
BlnI	CCTAGG	1 cut(s)	473
BlsI	GCNGC	1 cut(s)	506
BmcAI	AGTACT	1 cut(s)	497
Bme1390I	CCNGG	1 cut(s)	513
BmeT110I	CYCGRG	1 cut(s)	546
BmgT120I	GGNCC	1 cut(s)	459
BmiI	GGNNCC	2 cut(s)	399, 480
BmrFI	CCNGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	401, 473, 511
Bse3DI	GCAATG	1 cut(s)	285
BseBI	CCWGG	1 cut(s)	513
BseDI	CCNNGG	3 cut(s)	401, 473, 511
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	2 cut(s)	299, 374
BseXI	GCAGC	1 cut(s)	491
BshFI	GGCC	1 cut(s)	460
BsiHKAI	GWGCWC	3 cut(s)	53, 149, 324
BsiHKCI	CYCGRG	1 cut(s)	546
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	460
BsoBI	CYCGRG	1 cut(s)	546
Bsp1286I	GDGCHC	4 cut(s)	53, 149, 324, 409
Bsp143I	GATC	1 cut(s)	449
BspACI	CCGC	1 cut(s)	490
BspANI	GGCC	1 cut(s)	460
BspCNI	CTCAG	2 cut(s)	300, 375
BspLI	GGNNCC	2 cut(s)	399, 480
BspTI	CTTAAG	2 cut(s)	101, 499
BsrDI	GCAATG	1 cut(s)	285
BssECI	CCNNGG	3 cut(s)	401, 473, 511
BssMI	GATC	1 cut(s)	449
BssT1I	CCWWGG	2 cut(s)	401, 473
Bst2UI	CCWGG	1 cut(s)	513
Bst4CI	ACNGT	2 cut(s)	35, 126
Bst6I	CTCTTC	4 cut(s)	107, 333, 357, 363
BstAFI	CTTAAG	2 cut(s)	101, 499
BstC8I	GCNNGC	1 cut(s)	458
BstDEI	CTNAG	2 cut(s)	308, 383
BstH2I	RGCGCY	1 cut(s)	167
BstHHI	GCGC	1 cut(s)	166
BstKTI	GATC	1 cut(s)	452
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	1 cut(s)	449
BstMWI	GCNNNNNNNGC	1 cut(s)	513
BstNI	CCWGG	1 cut(s)	513
BstSCI	CCNGG	1 cut(s)	511
BstV1I	GCAGC	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	460
Cac8I	GCNNGC	1 cut(s)	458
CfoI	GCGC	1 cut(s)	166
Cfr13I	GGNCC	1 cut(s)	459
Csp6I	GTAC	1 cut(s)	496
CviAII	CATG	2 cut(s)	141, 292
CviJI	RGCY	9 cut(s)	51, 147, 233, 266, 307, 407, 460, 504, 551
CviKI_1	RGCY	9 cut(s)	51, 147, 233, 266, 307, 407, 460, 504, 551
CviQI	GTAC	1 cut(s)	496
DdeI	CTNAG	2 cut(s)	308, 383
DpnI	GATC	1 cut(s)	451
DpnII	GATC	1 cut(s)	449
Eam1104I	CTCTTC	4 cut(s)	107, 333, 357, 363
EarI	CTCTTC	4 cut(s)	107, 333, 357, 363
Ecl136II	GAGCTC	2 cut(s)	51, 147
Eco130I	CCWWGG	2 cut(s)	401, 473
Eco24I	GRGCYC	3 cut(s)	53, 149, 409
Eco53kI	GAGCTC	2 cut(s)	51, 147
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	546
EcoICRI	GAGCTC	2 cut(s)	51, 147
EcoO109I	RGGNCCY	1 cut(s)	459
EcoRI	GAATTC	2 cut(s)	151, 176
EcoRII	CCWGG	1 cut(s)	511
EcoT14I	CCWWGG	2 cut(s)	401, 473
EcoT38I	GRGCYC	3 cut(s)	53, 149, 409
ErhI	CCWWGG	2 cut(s)	401, 473
FaeI	CATG	2 cut(s)	144, 295
FaiI	YATR	5 cut(s)	55, 68, 74, 142, 293
FalI	AAGNNNNNCTT	2 cut(s)	231, 263
FatI	CATG	2 cut(s)	140, 291
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	1 cut(s)	505
FriOI	GRGCYC	3 cut(s)	53, 149, 409
Fsp4HI	GCNGC	1 cut(s)	505
FspBI	CTAG	1 cut(s)	474
GlaI	GCGC	1 cut(s)	165
GluI	GCNGC	1 cut(s)	505
HaeII	RGCGCY	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	460
HhaI	GCGC	1 cut(s)	166
Hin1II	CATG	2 cut(s)	144, 295
Hin6I	GCGC	1 cut(s)	164
HinP1I	GCGC	1 cut(s)	164
HincII	GTYRAC	1 cut(s)	521
HindII	GTYRAC	1 cut(s)	521
HinfI	GANTC	3 cut(s)	373, 469, 556
Hpy166II	GTNNAC	2 cut(s)	129, 521
Hpy188I	TCNGA	1 cut(s)	157
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	2 cut(s)	129, 521
HpyAV	CCTTC	2 cut(s)	73, 152
HpyCH4III	ACNGT	2 cut(s)	35, 126
HpyCH4V	TGCA	4 cut(s)	7, 299, 349, 507
HpyF10VI	GCNNNNNNNGC	1 cut(s)	513
HpyF3I	CTNAG	2 cut(s)	308, 383
Hsp92II	CATG	2 cut(s)	144, 295
HspAI	GCGC	1 cut(s)	164
Kzo9I	GATC	1 cut(s)	449
LmnI	GCTCC	3 cut(s)	144, 161, 319
LpnPI	CCDG	5 cut(s)	120, 338, 442, 498, 525
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	1 cut(s)	405
MaeI	CTAG	1 cut(s)	474
MalI	GATC	1 cut(s)	451
MboI	GATC	1 cut(s)	449
MboII	GAAGA	5 cut(s)	124, 350, 364, 374, 380
MhlI	GDGCHC	4 cut(s)	53, 149, 324, 409
MluCI	AATT	3 cut(s)	151, 176, 529
MmeI	TCCRAC	2 cut(s)	236, 559
MnlI	CCTC	2 cut(s)	336, 358
MroXI	GAANNNNTTC	1 cut(s)	372
MseI	TTAA	3 cut(s)	102, 243, 500
MspCI	CTTAAG	2 cut(s)	101, 499
MspR9I	CCNGG	1 cut(s)	513
MvaI	CCWGG	1 cut(s)	513
MwoI	GCNNNNNNNGC	1 cut(s)	513
NdeII	GATC	1 cut(s)	449
NlaIII	CATG	2 cut(s)	144, 295
NlaIV	GGNNCC	2 cut(s)	399, 480
PaeR7I	CTCGAG	1 cut(s)	546
PdmI	GAANNNNTTC	1 cut(s)	372
PfeI	GAWTC	3 cut(s)	373, 469, 556
PkrI	GCNGC	1 cut(s)	506
Psp124BI	GAGCTC	2 cut(s)	53, 149
Psp6I	CCWGG	1 cut(s)	511
PspGI	CCWGG	1 cut(s)	511
PspN4I	GGNNCC	2 cut(s)	399, 480
PspPI	GGNCC	1 cut(s)	459
PspXI	VCTCGAGB	1 cut(s)	546
RsaI	GTAC	1 cut(s)	497
RsaNI	GTAC	1 cut(s)	496
SacI	GAGCTC	2 cut(s)	53, 149
SaqAI	TTAA	3 cut(s)	102, 243, 500
SatI	GCNGC	1 cut(s)	505
Sau3AI	GATC	1 cut(s)	449
Sau96I	GGNCC	1 cut(s)	459
ScaI	AGTACT	1 cut(s)	497
ScrFI	CCNGG	1 cut(s)	513
SduI	GDGCHC	4 cut(s)	53, 149, 324, 409
SfaNI	GCATC	1 cut(s)	405
Sfr274I	CTCGAG	1 cut(s)	546
SlaI	CTCGAG	1 cut(s)	546
SmlI	CTYRAG	4 cut(s)	101, 234, 499, 546
SmoI	CTYRAG	4 cut(s)	101, 234, 499, 546
Sse9I	AATT	3 cut(s)	151, 176, 529
SsiI	CCGC	1 cut(s)	490
SspMI	CTAG	1 cut(s)	474
SstI	GAGCTC	2 cut(s)	53, 149
StyD4I	CCNGG	1 cut(s)	511
StyI	CCWWGG	2 cut(s)	401, 473
TaaI	ACNGT	2 cut(s)	35, 126
TaqI	TCGA	4 cut(s)	149, 409, 426, 547
TasI	AATT	3 cut(s)	151, 176, 529
TatI	WGTACW	1 cut(s)	495
TfiI	GAWTC	3 cut(s)	373, 469, 556
Tru1I	TTAA	3 cut(s)	102, 243, 500
Tru9I	TTAA	3 cut(s)	102, 243, 500
TseI	GCWGC	1 cut(s)	504
TspDTI	ATGAA	4 cut(s)	32, 129, 189, 427
Vha464I	CTTAAG	2 cut(s)	101, 499
XapI	RAATTY	2 cut(s)	151, 176
XhoI	CTCGAG	1 cut(s)	546
XmaJI	CCTAGG	1 cut(s)	473
XmiI	GTMKAC	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	372
XspI	CTAG	1 cut(s)	474
ZrmI	AGTACT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.