Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008723.1

Orthogroup ID

OG0005732

Physical Location & Seq

Genomic Coordinates Forward (+)

13990 .. 16341

Gene Structure 2352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008723.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggagaaggcactcaccaagtctagtcttaagtctgtgaagagtactagtccttcacactctgctgtgagttcatggagctcaaattctggaggaatgccaagagatgaactgaaagaacggggatatgacaaagactactactataaggttgatagtcgtgtatatgcttcttatcagagcaagtctcctacaagagaaagtaccaagcctcaagaagttaaacttcacactcaacaaagggcaaccaaaagggcaatgttcaactacatggttgcagcaaagttgggtatcttggagcagcggagaaagcaagaagagatgttgcataagatgatagaagaggaagaggttcgcttactgagaaaggagatgattccaagggctcaactcatgccgtttttcgatagaccttttattcctcaaagatcaagcaggcctttgacaattcctaaagaaccaagcttccgcatgatgagcagcaagagcttcactgcttgtagatctggtaccccaatctacagtttccaacacactactcaagcccccatcaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

185

Amino Acids

21.48

Weight (kDa)

10.0

Isoelectric Point (pI)

73.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005732)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37478 AT5G37478 AT5G37478 AT5G37478
fragaria_vesca	FvH4_1g30340 FvH4_1g30340 FvH4_1g30340 FvH4_1g30340
malus_domestica	MD09G1276000.v1.1 MD17G1270100.v1.1
prunus_persica	Prupe.3G016300_v2.0.a1
pyrus_communis	pycom09g18620 pycom17g26860
rosa_chinensis	RchiOBHm_Chr3g0490251
rosa_laevigata	RLG00000022892
rosa_multiflora	Rmu_sc0008723.1_g000003
rosa_roxburghii	Rroxscaffold_6G00393660
rosa_rugosa	Rorug03G0243300 Rorug03G0243300 Rorug03G0243300 Rorug03G0243400 Rorug03G0243400 Rorug03G0243400
rosa_samantha	Rh3AG291700 Rh3BG329000 Rh3CG325700 Rh3DG325000
rosa_wichuraiana	Rw3G025830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	509
AccB1I	GGYRCC	1 cut(s)	509
AciI	CCGC	2 cut(s)	304, 469
AcsI	RAATTY	1 cut(s)	85
AfaI	GTAC	3 cut(s)	46, 205, 511
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	265
AhlI	ACTAGT	1 cut(s)	47
AloI	GAACNNNNNNTCC	2 cut(s)	450, 482
AluBI	AGCT	3 cut(s)	81, 465, 489
AluI	AGCT	3 cut(s)	81, 465, 489
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	437
ApeKI	GCWGC	3 cut(s)	278, 301, 480
ApoI	RAATTY	1 cut(s)	85
Asp700I	GAANNNNTTC	1 cut(s)	351
Asp718I	GGTACC	1 cut(s)	509
AsuHPI	GGTGA	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	509
BanII	GRGCYC	2 cut(s)	83, 388
BarI	GAAGNNNNNNTAC	2 cut(s)	37, 69
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	3 cut(s)	290, 313, 492
BccI	CCATC	1 cut(s)	557
BceAI	ACGGC	1 cut(s)	382
BcoDI	GTCTC	1 cut(s)	192
BcuI	ACTAGT	1 cut(s)	47
BfaI	CTAG	2 cut(s)	24, 48
BfmI	CTRYAG	1 cut(s)	520
BfrI	CTTAAG	1 cut(s)	29
BglII	AGATCT	1 cut(s)	503
BisI	GCNGC	3 cut(s)	279, 302, 481
BlsI	GCNGC	3 cut(s)	280, 303, 482
BmcAI	AGTACT	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	511
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
BpmI	CTGGAG	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	198, 525
BsaJI	CCNNGG	1 cut(s)	380
Bse3DI	GCAATG	1 cut(s)	264
BseDI	CCNNGG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	1 cut(s)	353
BseXI	GCAGC	3 cut(s)	290, 313, 492
BshFI	GGCC	1 cut(s)	439
BshNI	GGYRCC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	192
BsmI	GAATGC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	439
Bsp1286I	GDGCHC	2 cut(s)	83, 388
Bsp143I	GATC	2 cut(s)	428, 503
BspACI	CCGC	2 cut(s)	304, 469
BspANI	GGCC	1 cut(s)	439
BspCNI	CTCAG	1 cut(s)	354
BspLI	GGNNCC	1 cut(s)	511
BspT107I	GGYRCC	1 cut(s)	509
BspTI	CTTAAG	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	264
BssECI	CCNNGG	1 cut(s)	380
BssMI	GATC	2 cut(s)	428, 503
BssT1I	CCWWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	524
Bst6I	CTCTTC	4 cut(s)	35, 312, 336, 342
BstAFI	CTTAAG	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	437
BstDEI	CTNAG	1 cut(s)	362
BstKTI	GATC	2 cut(s)	431, 506
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	2 cut(s)	428, 503
BstMWI	GCNNNNNNNGC	3 cut(s)	310, 477, 486
BstSFI	CTRYAG	1 cut(s)	520
BstV1I	GCAGC	3 cut(s)	290, 313, 492
BstX2I	RGATCY	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	439
BtsI	GCAGTG	1 cut(s)	492
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	1 cut(s)	437
Csp6I	GTAC	3 cut(s)	45, 204, 510
CviAII	CATG	4 cut(s)	75, 271, 394, 472
CviJI	RGCY	7 cut(s)	81, 211, 386, 439, 465, 489, 545
CviKI_1	RGCY	7 cut(s)	81, 211, 386, 439, 465, 489, 545
CviQI	GTAC	3 cut(s)	45, 204, 510
DdeI	CTNAG	1 cut(s)	362
DpnI	GATC	2 cut(s)	430, 505
DpnII	GATC	2 cut(s)	428, 503
Eam1104I	CTCTTC	4 cut(s)	35, 312, 336, 342
EarI	CTCTTC	4 cut(s)	35, 312, 336, 342
Ecl136II	GAGCTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	380
Eco147I	AGGCCT	1 cut(s)	439
Eco24I	GRGCYC	2 cut(s)	83, 388
Eco53kI	GAGCTC	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	380
EcoT38I	GRGCYC	2 cut(s)	83, 388
ErhI	CCWWGG	1 cut(s)	380
FaeI	CATG	4 cut(s)	78, 274, 397, 475
FaiI	YATR	9 cut(s)	76, 129, 147, 166, 168, 272, 330, 395, 473
FalI	AAGNNNNNCTT	4 cut(s)	210, 242, 424, 456
FatI	CATG	4 cut(s)	74, 270, 393, 471
Fnu4HI	GCNGC	3 cut(s)	279, 302, 481
FriOI	GRGCYC	2 cut(s)	83, 388
Fsp4HI	GCNGC	3 cut(s)	279, 302, 481
FspBI	CTAG	2 cut(s)	24, 48
GluI	GCNGC	3 cut(s)	279, 302, 481
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	439
Hin1II	CATG	4 cut(s)	78, 274, 397, 475
HindIII	AAGCTT	1 cut(s)	463
HinfI	GANTC	1 cut(s)	376
HphI	GGTGA	1 cut(s)	7
Hpy188I	TCNGA	1 cut(s)	180
Hpy188III	TCNNGA	2 cut(s)	90, 215
HpyAV	CCTTC	1 cut(s)	63
HpyCH4III	ACNGT	1 cut(s)	524
HpyCH4V	TGCA	2 cut(s)	278, 328
HpyF10VI	GCNNNNNNNGC	3 cut(s)	310, 477, 486
HpyF3I	CTNAG	1 cut(s)	362
Hsp92II	CATG	4 cut(s)	78, 274, 397, 475
KpnI	GGTACC	1 cut(s)	513
Kzo9I	GATC	2 cut(s)	428, 503
LmnI	GCTCC	2 cut(s)	78, 298
LpnPI	CCDG	3 cut(s)	75, 421, 492
Lsp1109I	GCAGC	3 cut(s)	290, 313, 492
MaeI	CTAG	2 cut(s)	24, 48
MalI	GATC	2 cut(s)	430, 505
MboI	GATC	2 cut(s)	428, 503
MboII	GAAGA	4 cut(s)	52, 329, 353, 359
MflI	RGATCY	1 cut(s)	503
MhlI	GDGCHC	2 cut(s)	83, 388
MluCI	AATT	2 cut(s)	85, 447
MmeI	TCCRAC	1 cut(s)	553
MnlI	CCTC	5 cut(s)	86, 222, 337, 343, 432
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	2 cut(s)	30, 222
MspA1I	CMGCKG	1 cut(s)	304
MspCI	CTTAAG	1 cut(s)	29
Mva1269I	GAATGC	1 cut(s)	102
MwoI	GCNNNNNNNGC	3 cut(s)	310, 477, 486
NdeII	GATC	2 cut(s)	428, 503
NlaIII	CATG	4 cut(s)	78, 274, 397, 475
NlaIV	GGNNCC	1 cut(s)	511
PceI	AGGCCT	1 cut(s)	439
PctI	GAATGC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	376
PkrI	GCNGC	3 cut(s)	280, 303, 482
Psp124BI	GAGCTC	1 cut(s)	83
PspN4I	GGNNCC	1 cut(s)	511
PsuI	RGATCY	1 cut(s)	503
RsaI	GTAC	3 cut(s)	46, 205, 511
RsaNI	GTAC	3 cut(s)	45, 204, 510
SacI	GAGCTC	1 cut(s)	83
SaqAI	TTAA	2 cut(s)	30, 222
SatI	GCNGC	3 cut(s)	279, 302, 481
Sau3AI	GATC	2 cut(s)	428, 503
ScaI	AGTACT	1 cut(s)	46
SduI	GDGCHC	2 cut(s)	83, 388
SetI	ASST	6 cut(s)	83, 153, 354, 415, 467, 491
SfcI	CTRYAG	1 cut(s)	520
SmlI	CTYRAG	3 cut(s)	29, 213, 540
SmoI	CTYRAG	3 cut(s)	29, 213, 540
SpeI	ACTAGT	1 cut(s)	47
Sse9I	AATT	2 cut(s)	85, 447
SseBI	AGGCCT	1 cut(s)	439
SsiI	CCGC	2 cut(s)	304, 469
SspMI	CTAG	2 cut(s)	24, 48
SstI	GAGCTC	1 cut(s)	83
StuI	AGGCCT	1 cut(s)	439
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	524
TaqI	TCGA	1 cut(s)	405
TasI	AATT	2 cut(s)	85, 447
TatI	WGTACW	1 cut(s)	44
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	2 cut(s)	30, 222
Tru9I	TTAA	2 cut(s)	30, 222
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	3 cut(s)	278, 301, 480
TspDTI	ATGAA	2 cut(s)	63, 123
TspRI	CASTG	1 cut(s)	499
Vha464I	CTTAAG	1 cut(s)	29
XapI	RAATTY	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	2 cut(s)	24, 48
ZrmI	AGTACT	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.