Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0007190

Physical Location & Seq

Genomic Coordinates Forward (+)

19394932 .. 19395965

Gene Structure 1034 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g18600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGTCGGTGGCGTGTGGCGTGGAGTGCGTGGTCGTGTTGGGCTGTATGCGCTGGGTGTGGCGGCGCTGCACCTACATCGGCTCCAACGACAGCGCCACCTGGTCCTCCGCCACCCCCGACGAGTTCGACCCCGTCCCCCGCATCTGCCGCCTAATCCTCGCCGTCTACGAGCCCGATCTTCACAACCCCCACTTCATCCCCACCGTCGGATTCCGCCCCAACCCCGACTGGGTCGTCAAGCGCGTCACTTACGAACAAACCCTTGGACATGCGCCGCCCTACCTCATCTACGTCGACCACGACCACAAGGAGCTCGTCCTCGCTATTCGCGGCCTCAATTTGGTCAAAGAGAGCGACTACAAACTCTTGCTCGATAACGAGCTCGGAAAGCAGATGTTCGACGGAGGCTACGTCCACCACGGCCTCTTGAAGTCGGCGATTTGGCTGCTCAACGAAGAGGGCGAGACATTGAAGCGGCTCTGGCTCGAAAACGGATCCAATTACGATATGGTGTTTGCGGGTCACTCTTTGGGGTCTGGTGTGGCGGCGCTGCTGACTGTGATTGTTGTCAACCACCGGGACTGGCTTGGCGGGGTCCCCCGGAGCAAGGTGAGGTGCTACGCGCTTGCTCCGGCGCGTTGTATGTCGTTAAATTTGGCCGTCAAGTATGCCGATGTTATATACTCGGTGGTTCTGCAGGATGATTTCTTGCCAAGAACTGCAACCCCCTTGGAAGACATTTTCAAGTCAATCTTTTGGTTGCTTGCCCTGCTTGTTGTTTTTCGTTTGTTTGAGGGATACTTTCATACCAGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase3_N Lipase_3

Protein Analysis

273

Amino Acids

30.94

Weight (kDa)

6.55

Isoelectric Point (pI)

42.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37710 AT5G37710
fragaria_vesca	FvH4_1g30350 FvH4_1g30350 FvH4_1g30350 FvH4_1g30350 FvH4_1g30350 FvH4_1g30350
malus_domestica	MD00G1116700.v1.1 MD09G1275900.v1.1
prunus_persica	Prupe.3G016400_v2.0.a1 Prupe.3G016400_v2.0.a1 Prupe.3G016400_v2.0.a1
pyrus_communis	pycom09g18600 pycom17g26850
rosa_chinensis	RchiOBHm_Chr3g0490261
rosa_multiflora	Rmu_sc0006276.1_g000004 Rmu_sc0008723.1_g000002
rosa_roxburghii	Rroxscaffold_6G00393650
rosa_rugosa	Rorug03G0243400
rosa_samantha	Rh3AG291800 Rh3BG329100 Rh3CG325800 Rh3DG325100
rosa_wichuraiana	Rw3G025840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AccI	GTMKAC	2 cut(s)	165, 294
AccII	CGCG	4 cut(s)	243, 330, 623, 637
AclWI	GGATC	2 cut(s)	489, 502
AcoI	YGGCCR	1 cut(s)	657
AcsI	RAATTY	1 cut(s)	652
AfiI	CCNNNNNNNGG	4 cut(s)	206, 229, 340, 607
AgsI	TTSAA	3 cut(s)	430, 472, 745
AjnI	CCWGG	1 cut(s)	98
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	2 cut(s)	313, 382
AluI	AGCT	2 cut(s)	313, 382
Alw21I	GWGCWC	2 cut(s)	315, 384
Alw26I	GTCTC	1 cut(s)	458
AlwI	GGATC	2 cut(s)	489, 502
AoxI	GGCC	3 cut(s)	331, 421, 657
ApeKI	GCWGC	3 cut(s)	66, 445, 550
ApoI	RAATTY	1 cut(s)	652
AspLEI	GCGC	8 cut(s)	51, 66, 95, 243, 274, 550, 625, 637
AspS9I	GGNCC	2 cut(s)	102, 595
AsuC2I	CCSGG	2 cut(s)	578, 601
AsuHPI	GGTGA	1 cut(s)	622
AvaII	GGWCC	2 cut(s)	102, 595
BamHI	GGATCC	1 cut(s)	494
BanII	GRGCYC	3 cut(s)	174, 315, 384
BbsI	GAAGAC	1 cut(s)	741
Bbv12I	GWGCWC	2 cut(s)	315, 384
BbvI	GCAGC	3 cut(s)	53, 432, 537
BceAI	ACGGC	3 cut(s)	146, 436, 644
BcgI	CGANNNNNNTGC	4 cut(s)	58, 92, 427, 461
BciT130I	CCWGG	1 cut(s)	100
BciVI	GTATCC	1 cut(s)	791
BcnI	CCSGG	2 cut(s)	578, 601
BcoDI	GTCTC	1 cut(s)	458
BfmI	CTRYAG	1 cut(s)	695
BfoI	RGCGCY	3 cut(s)	67, 96, 551
BfuI	GTATCC	1 cut(s)	791
BisI	GCNGC	9 cut(s)	62, 67, 148, 275, 331, 446, 476, 546, 551
BlsI	GCNGC	9 cut(s)	63, 68, 149, 276, 332, 447, 477, 547, 552
Bme1390I	CCNGG	3 cut(s)	100, 578, 601
Bme18I	GGWCC	2 cut(s)	102, 595
BmgT120I	GGNCC	2 cut(s)	102, 595
BmiI	GGNNCC	4 cut(s)	82, 496, 596, 597
BmrFI	CCNGG	3 cut(s)	100, 578, 601
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	150
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	741
BpuMI	CCSGG	2 cut(s)	578, 601
BsaJI	CCNNGG	4 cut(s)	262, 418, 599, 729
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 396, 426
Bsc4I	CCNNNNNNNGG	4 cut(s)	206, 229, 340, 607
Bse1I	ACTGG	2 cut(s)	233, 587
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	4 cut(s)	262, 418, 599, 729
BseGI	GGATG	2 cut(s)	195, 706
BseLI	CCNNNNNNNGG	4 cut(s)	206, 229, 340, 607
BseNI	ACTGG	2 cut(s)	233, 587
BseXI	GCAGC	3 cut(s)	53, 432, 537
BseYI	CCCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	52
Bsh1236I	CGCG	4 cut(s)	243, 330, 623, 637
BshFI	GGCC	3 cut(s)	333, 423, 659
BsiHKAI	GWGCWC	2 cut(s)	315, 384
BsiSI	CCGG	3 cut(s)	577, 601, 632
BslFI	GGGAC	3 cut(s)	119, 581, 593
BslI	CCNNNNNNNGG	4 cut(s)	206, 229, 340, 607
BsmAI	GTCTC	1 cut(s)	458
BsmFI	GGGAC	3 cut(s)	119, 581, 593
BsnI	GGCC	3 cut(s)	333, 423, 659
Bsp1286I	GDGCHC	3 cut(s)	174, 315, 384
Bsp143I	GATC	2 cut(s)	175, 494
BspANI	GGCC	3 cut(s)	333, 423, 659
BspFNI	CGCG	4 cut(s)	243, 330, 623, 637
BspLI	GGNNCC	4 cut(s)	82, 496, 596, 597
BspMAI	CTGCAG	1 cut(s)	699
BspPI	GGATC	2 cut(s)	489, 502
BsrI	ACTGG	2 cut(s)	233, 587
BssECI	CCNNGG	4 cut(s)	262, 418, 599, 729
BssMI	GATC	2 cut(s)	175, 494
BssT1I	CCWWGG	2 cut(s)	262, 729
Bst2UI	CCWGG	1 cut(s)	100
Bst4CI	ACNGT	2 cut(s)	205, 559
Bst6I	CTCTTC	1 cut(s)	450
BstC8I	GCNNGC	2 cut(s)	627, 765
BstDSI	CCRYGG	1 cut(s)	418
BstF5I	GGATG	2 cut(s)	195, 706
BstFNI	CGCG	4 cut(s)	243, 330, 623, 637
BstH2I	RGCGCY	3 cut(s)	67, 96, 551
BstHHI	GCGC	8 cut(s)	51, 66, 95, 243, 274, 550, 625, 637
BstKTI	GATC	2 cut(s)	178, 497
BstMAI	GTCTC	1 cut(s)	458
BstMBI	GATC	2 cut(s)	175, 494
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 48, 147, 388, 481, 769
BstNI	CCWGG	1 cut(s)	100
BstNSI	RCATGY	1 cut(s)	272
BstSCI	CCNGG	3 cut(s)	98, 576, 599
BstSFI	CTRYAG	1 cut(s)	695
BstUI	CGCG	4 cut(s)	243, 330, 623, 637
BstV1I	GCAGC	3 cut(s)	53, 432, 537
BstV2I	GAAGAC	1 cut(s)	741
BstX2I	RGATCY	1 cut(s)	494
BstYI	RGATCY	1 cut(s)	494
BsuI	GTATCC	1 cut(s)	791
BsuRI	GGCC	3 cut(s)	333, 423, 659
BtgI	CCRYGG	1 cut(s)	418
BtsCI	GGATG	2 cut(s)	195, 706
Cac8I	GCNNGC	2 cut(s)	627, 765
CfoI	GCGC	8 cut(s)	51, 66, 95, 243, 274, 550, 625, 637
Cfr13I	GGNCC	2 cut(s)	102, 595
CseI	GACGC	1 cut(s)	232
CsiI	ACCWGGT	1 cut(s)	98
CviAII	CATG	1 cut(s)	269
DpnI	GATC	2 cut(s)	177, 496
DpnII	GATC	2 cut(s)	175, 494
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	657
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
EciI	GGCGGA	2 cut(s)	97, 203
Ecl136II	GAGCTC	2 cut(s)	313, 382
Eco130I	CCWWGG	2 cut(s)	262, 729
Eco24I	GRGCYC	3 cut(s)	174, 315, 384
Eco47I	GGWCC	2 cut(s)	102, 595
Eco53kI	GAGCTC	2 cut(s)	313, 382
EcoICRI	GAGCTC	2 cut(s)	313, 382
EcoO109I	RGGNCCY	1 cut(s)	595
EcoRII	CCWGG	1 cut(s)	98
EcoT14I	CCWWGG	2 cut(s)	262, 729
EcoT38I	GRGCYC	3 cut(s)	174, 315, 384
ErhI	CCWWGG	2 cut(s)	262, 729
FaeI	CATG	1 cut(s)	272
FaiI	YATR	8 cut(s)	47, 270, 509, 644, 669, 680, 682, 807
FalI	AAGNNNNNCTT	2 cut(s)	737, 769
FaqI	GGGAC	3 cut(s)	119, 581, 593
FatI	CATG	1 cut(s)	268
FauI	CCCGC	3 cut(s)	146, 511, 584
FblI	GTMKAC	2 cut(s)	165, 294
Fnu4HI	GCNGC	9 cut(s)	62, 67, 148, 275, 331, 446, 476, 546, 551
FokI	GGATG	2 cut(s)	182, 713
FriOI	GRGCYC	3 cut(s)	174, 315, 384
Fsp4HI	GCNGC	9 cut(s)	62, 67, 148, 275, 331, 446, 476, 546, 551
GlaI	GCGC	8 cut(s)	50, 65, 94, 242, 273, 549, 624, 636
GluI	GCNGC	9 cut(s)	62, 67, 148, 275, 331, 446, 476, 546, 551
GsaI	CCCAGC	1 cut(s)	55
HaeII	RGCGCY	3 cut(s)	67, 96, 551
HaeIII	GGCC	3 cut(s)	333, 423, 659
HapII	CCGG	3 cut(s)	577, 601, 632
HgaI	GACGC	1 cut(s)	232
HhaI	GCGC	8 cut(s)	51, 66, 95, 243, 274, 550, 625, 637
Hin1II	CATG	1 cut(s)	272
Hin6I	GCGC	8 cut(s)	49, 64, 93, 241, 272, 548, 623, 635
HinP1I	GCGC	8 cut(s)	49, 64, 93, 241, 272, 548, 623, 635
HincII	GTYRAC	2 cut(s)	295, 571
HindII	GTYRAC	2 cut(s)	295, 571
HinfI	GANTC	1 cut(s)	210
HpaII	CCGG	3 cut(s)	577, 601, 632
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	4 cut(s)	166, 295, 415, 571
Hpy188I	TCNGA	2 cut(s)	209, 386
Hpy188III	TCNNGA	1 cut(s)	427
Hpy8I	GTNNAC	4 cut(s)	166, 295, 415, 571
Hpy99I	CGWCG	4 cut(s)	122, 209, 296, 404
HpyAV	CCTTC	1 cut(s)	807
HpyCH4III	ACNGT	2 cut(s)	205, 559
HpyCH4IV	ACGT	2 cut(s)	291, 411
HpyCH4V	TGCA	3 cut(s)	69, 697, 722
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 48, 147, 388, 481, 769
HpySE526I	ACGT	2 cut(s)	291, 411
Hsp92II	CATG	1 cut(s)	272
HspAI	GCGC	8 cut(s)	49, 64, 93, 241, 272, 548, 623, 635
KflI	GGGWCCC	1 cut(s)	595
Kzo9I	GATC	2 cut(s)	175, 494
LmnI	GCTCC	4 cut(s)	86, 310, 603, 634
Lsp1109I	GCAGC	3 cut(s)	53, 432, 537
LweI	GCATC	1 cut(s)	150
MabI	ACCWGGT	1 cut(s)	98
MaeII	ACGT	2 cut(s)	291, 411
MaeIII	GTNAC	2 cut(s)	244, 521
MalI	GATC	2 cut(s)	177, 496
MboI	GATC	2 cut(s)	175, 494
MboII	GAAGA	3 cut(s)	170, 467, 746
MflI	RGATCY	1 cut(s)	494
MhlI	GDGCHC	3 cut(s)	174, 315, 384
MluCI	AATT	3 cut(s)	337, 499, 652
MmeI	TCCRAC	2 cut(s)	108, 187
MseI	TTAA	1 cut(s)	650
MspI	CCGG	3 cut(s)	577, 601, 632
MspR9I	CCNGG	3 cut(s)	100, 578, 601
MvaI	CCWGG	1 cut(s)	100
MvnI	CGCG	4 cut(s)	243, 330, 623, 637
MwoI	GCNNNNNNNGC	6 cut(s)	24, 48, 147, 388, 481, 769
NciI	CCSGG	2 cut(s)	578, 601
NdeII	GATC	2 cut(s)	175, 494
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	4 cut(s)	82, 496, 596, 597
NmuCI	GTSAC	2 cut(s)	244, 521
NspI	RCATGY	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	6 cut(s)	84, 165, 240, 297, 408, 459
PfeI	GAWTC	1 cut(s)	210
PflFI	GACNNNGTC	2 cut(s)	131, 230
PkrI	GCNGC	9 cut(s)	63, 68, 149, 276, 332, 447, 477, 547, 552
PpuMI	RGGWCCY	1 cut(s)	595
Psp124BI	GAGCTC	2 cut(s)	315, 384
Psp5II	RGGWCCY	1 cut(s)	595
Psp6I	CCWGG	1 cut(s)	98
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	98
PspN4I	GGNNCC	4 cut(s)	82, 496, 596, 597
PspPI	GGNCC	2 cut(s)	102, 595
PspPPI	RGGWCCY	1 cut(s)	595
PstI	CTGCAG	1 cut(s)	699
PsuI	RGATCY	1 cut(s)	494
PsyI	GACNNNGTC	2 cut(s)	131, 230
SacI	GAGCTC	2 cut(s)	315, 384
SalI	GTCGAC	1 cut(s)	293
SaqAI	TTAA	1 cut(s)	650
SatI	GCNGC	9 cut(s)	62, 67, 148, 275, 331, 446, 476, 546, 551
Sau3AI	GATC	2 cut(s)	175, 494
Sau96I	GGNCC	2 cut(s)	102, 595
ScrFI	CCNGG	3 cut(s)	100, 578, 601
SduI	GDGCHC	3 cut(s)	174, 315, 384
SexAI	ACCWGGT	1 cut(s)	98
SfaNI	GCATC	1 cut(s)	150
SfcI	CTRYAG	1 cut(s)	695
SinI	GGWCC	2 cut(s)	102, 595
Sse9I	AATT	3 cut(s)	337, 499, 652
SstI	GAGCTC	2 cut(s)	315, 384
StyD4I	CCNGG	3 cut(s)	98, 576, 599
StyI	CCWWGG	2 cut(s)	262, 729
TaaI	ACNGT	2 cut(s)	205, 559
TaiI	ACGT	2 cut(s)	294, 414
TaqI	TCGA	5 cut(s)	126, 294, 372, 399, 486
TasI	AATT	3 cut(s)	337, 499, 652
TauI	GCSGC	6 cut(s)	64, 150, 277, 333, 478, 548
TfiI	GAWTC	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	650
Tru9I	TTAA	1 cut(s)	650
TseFI	GTSAC	2 cut(s)	244, 521
TseI	GCWGC	3 cut(s)	66, 445, 550
Tsp45I	GTSAC	2 cut(s)	244, 521
TspDTI	ATGAA	2 cut(s)	184, 794
TspGWI	ACGGA	2 cut(s)	417, 507
Tth111I	GACNNNGTC	2 cut(s)	131, 230
VpaK11BI	GGWCC	2 cut(s)	102, 595
XapI	RAATTY	1 cut(s)	652
XceI	RCATGY	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	505
XmiI	GTMKAC	2 cut(s)	165, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.