MD00G1116700.v1.1

Lipase 3 N-terminal region

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
Physical Location & Seq
Forward (+)
24673279 .. 24677798
4520 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1116700.v1.1.491

Sequence Viewer

Length: 1353 bp
ATGTCGGTGGCGTGTGGCATGGAGTGCGTGGTTGTGTTGGGCTGTATGCGTTGGGTGTGGCGGCGCTGCACCTACATCGGCGCCAACGACAGCTCAACCTGGACATCCGCCTCTCCCGACGAGTTCGACCCAGTTCCCCGTGTCTGCCGCTTAGTCCTCGCCGTCTACGAGGCCGATCTCCACAACCCCCACTTCATCCCCACCTGCGGATTCCGCCCCAACCCCGACTGGGTAGTCAAGCGCGTCACCTACGAGCAAACCGACGGCCAGGCGCCTCCTTACCTCATCTACGTCGACCACGACCACAAGGAGCTCGTCCTCGCCATTCGCGGCCTCAATTTGGTCAAAGAGAGTGACTACAAGCTCTTGCTCGATAACAAGCTCGGAATGCAGATGTTCGACGGTGGATATGTCCACCACGGCCTCTTGAAGTCGGCGATTTGGCTGCTTAACGAAGAGGGCGAGACATTGAAGCGGCTCTGGCTCGAAAACGGGTCCAATTACGATATGGTGTTTGCGGGTCACTCTTTGGGGTCTGGTGTGGCGGCGCTGCTGACTGTCATTGTGGTCAACCATCGGGACCGGCTAGGCGGAGTCCCCCGAAGCAAGGTGAGGTGCTATGCGCTTGCTCCGGCGCGTTGTATGTCGTTGAATTTGGCCGTCAAGTATGCCGACGTTATTTACTCGGTTGTTTTGCAGGATGATTTCTTGCCAAGAACTGCAACCCCTTTGGAAGATATTTTCAAGTCCATCTTTTGCTTGCCCTGCTTCTTGTTTTTGGTTTGTTTGAGGGATACTTTCATACCAGAAGGTAGGAAGCTTAGGGATCCCAGAAGGCTTTACGCACCTGGTCGGATGTATCATATTGTTGAGCGCAAATGTTGCAGATGTGGGAGGTTTCCTCCAGAGGTCCGAACTGCCATTCCTGTTGATGGGAGATTTGAACATATAGTCTTGTCATGTAATGCCACATCTGATCATGGAATTATCTGGATAGAAAGGGAAGCGGAGAAGGCTTTATTAAGAATGAAGGAAAGTTGTTCTGAGACCGTAACAACTGCCCCAAAAGTACAAAAACTAGAGAGGTTGCGGACCTTTGAAAAAGAACACAAAGATGCATTGGAAAGAGCTGTCAGTTTGAATGTGCCTCATGCTGTAACGCCCAATGAGGAAGCCCCCGAAGACCAAAAACTGGAGGAGGCTCCAGAGATTGGGAATAAGAGTGAAGACCCTGCCGATACAAAGTCGAAGTCCACTGGTGGAAGGGCAAGTTGGGATGATGTGGTTGAAAAGCTTTTCAAGAAAGAGTCTGGGCATCTACTGCTAAAAAGAGATTCAAATCCCCCGGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

451

Amino Acids

50.92

Weight (kDa)

6.55

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase3_N PF03893 7 - 68 8.6e-17 Lipase 3 N-terminal region
Lipase_3 PF01764 106 - 242 1.5e-24 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 212
AasI GACNNNNNNGTC 1 cut(s) 233
Acc36I ACCTGC 1 cut(s) 212
AccB1I GGYRCC 2 cut(s) 80, 271
AccB7I CCANNNNNTGG 2 cut(s) 1192, 1211
AccI GTMKAC 2 cut(s) 165, 294
AccII CGCG 3 cut(s) 243, 330, 637
AclWI GGATC 2 cut(s) 821, 834
AcoI YGGCCR 2 cut(s) 265, 657
AcsI RAATTY 1 cut(s) 652
AcyI GRCGYC 2 cut(s) 81, 272
AfaI GTAC 1 cut(s) 1071
AfiI CCNNNNNNNGG 7 cut(s) 206, 229, 340, 607, 932, 1192, 1211
AjnI CCWGG 3 cut(s) 98, 267, 847
AjuI GAANNNNNNNTTGG 2 cut(s) 1255, 1287
AloI GAACNNNNNNTCC 2 cut(s) 907, 939
AluBI AGCT 7 cut(s) 93, 313, 364, 382, 820, 1130, 1294
AluI AGCT 7 cut(s) 93, 313, 364, 382, 820, 1130, 1294
Alw21I GWGCWC 1 cut(s) 315
Alw26I GTCTC 2 cut(s) 458, 1040
AlwI GGATC 2 cut(s) 821, 834
AoxI GGCC 5 cut(s) 171, 265, 331, 421, 657
ApeKI GCWGC 3 cut(s) 66, 445, 550
ApoI RAATTY 1 cut(s) 652
ArsI GACNNNNNNTTYG 2 cut(s) 1235, 1267
AspLEI GCGC 8 cut(s) 66, 83, 243, 274, 550, 625, 637, 876
AspS9I GGNCC 4 cut(s) 495, 580, 910, 1092
AsuC2I CCSGG 1 cut(s) 1346
AsuHPI GGTGA 2 cut(s) 238, 622
AvaII GGWCC 4 cut(s) 495, 580, 910, 1092
BamHI GGATCC 1 cut(s) 826
BanI GGYRCC 2 cut(s) 80, 271
BanII GRGCYC 1 cut(s) 315
BbsI GAAGAC 2 cut(s) 1188, 1233
Bbv12I GWGCWC 1 cut(s) 315
BbvI GCAGC 3 cut(s) 53, 432, 537
BccI CCATC 3 cut(s) 582, 758, 926
BceAI ACGGC 4 cut(s) 146, 280, 436, 644
BcgI CGANNNNNNTGC 4 cut(s) 58, 92, 427, 461
BciT130I CCWGG 3 cut(s) 100, 269, 849
BciVI GTATCC 1 cut(s) 787
BclI TGATCA 1 cut(s) 976
BcnI CCSGG 1 cut(s) 1346
BcoDI GTCTC 2 cut(s) 458, 1040
BfaI CTAG 2 cut(s) 587, 1079
BfoI RGCGCY 4 cut(s) 67, 84, 275, 551
BfuAI ACCTGC 1 cut(s) 212
BfuI GTATCC 1 cut(s) 787
BisI GCNGC 8 cut(s) 62, 67, 148, 331, 446, 476, 546, 551
BlsI GCNGC 8 cut(s) 63, 68, 149, 332, 447, 477, 547, 552
Bme1390I CCNGG 4 cut(s) 100, 269, 849, 1346
Bme18I GGWCC 4 cut(s) 495, 580, 910, 1092
BmgT120I GGNCC 4 cut(s) 495, 580, 910, 1092
BmiI GGNNCC 6 cut(s) 82, 273, 496, 581, 828, 1203
BmrFI CCNGG 4 cut(s) 100, 269, 849, 1346
BmrI ACTGGG 2 cut(s) 125, 238
BmsI GCATC 2 cut(s) 1105, 1324
BmuI ACTGGG 2 cut(s) 125, 238
BpiI GAAGAC 2 cut(s) 1188, 1233
BplI GAGNNNNNCTC 2 cut(s) 886, 918
BpmI CTGGAG 3 cut(s) 888, 1188, 1214
Bpu10I CCTNAGC 1 cut(s) 821
BpuMI CCSGG 1 cut(s) 1346
BsaBI GATNNNNATC 1 cut(s) 1338
BsaHI GRCGYC 2 cut(s) 81, 272
BsaI GGTCTC 1 cut(s) 1040
BsaJI CCNNGG 2 cut(s) 418, 1344
Bsc4I CCNNNNNNNGG 7 cut(s) 206, 229, 340, 607, 932, 1192, 1211
Bse118I RCCGGY 1 cut(s) 582
Bse1I ACTGG 4 cut(s) 131, 233, 1197, 1261
Bse8I GATNNNNATC 1 cut(s) 1338
BseBI CCWGG 3 cut(s) 100, 269, 849
BseDI CCNNGG 2 cut(s) 418, 1344
BseGI GGATG 5 cut(s) 104, 195, 706, 861, 1282
BseJI GATNNNNATC 1 cut(s) 1338
BseLI CCNNNNNNNGG 7 cut(s) 206, 229, 340, 607, 932, 1192, 1211
BseMII CTCAG 1 cut(s) 1035
BseNI ACTGG 4 cut(s) 131, 233, 1197, 1261
BseRI GAGGAG 1 cut(s) 1211
BseXI GCAGC 3 cut(s) 53, 432, 537
BsgI GTGCAG 1 cut(s) 52
Bsh1236I CGCG 3 cut(s) 243, 330, 637
BshFI GGCC 5 cut(s) 173, 267, 333, 423, 659
BshNI GGYRCC 2 cut(s) 80, 271
BsiHKAI GWGCWC 1 cut(s) 315
BsiSI CCGG 3 cut(s) 583, 632, 1346
BslFI GGGAC 2 cut(s) 581, 593
BslI CCNNNNNNNGG 7 cut(s) 206, 229, 340, 607, 932, 1192, 1211
BsmAI GTCTC 2 cut(s) 458, 1040
BsmFI GGGAC 2 cut(s) 581, 593
BsmI GAATGC 1 cut(s) 393
BsnI GGCC 5 cut(s) 173, 267, 333, 423, 659
Bso31I GGTCTC 1 cut(s) 1040
Bsp1286I GDGCHC 1 cut(s) 315
Bsp143I GATC 3 cut(s) 175, 826, 976
BspANI GGCC 5 cut(s) 173, 267, 333, 423, 659
BspCNI CTCAG 1 cut(s) 1036
BspFNI CGCG 3 cut(s) 243, 330, 637
BspLI GGNNCC 6 cut(s) 82, 273, 496, 581, 828, 1203
BspMI ACCTGC 1 cut(s) 212
BspPI GGATC 2 cut(s) 821, 834
BspT107I GGYRCC 2 cut(s) 80, 271
BspTNI GGTCTC 1 cut(s) 1040
BsrFI RCCGGY 1 cut(s) 582
BsrI ACTGG 4 cut(s) 131, 233, 1197, 1261
BssAI RCCGGY 1 cut(s) 582
BssECI CCNNGG 2 cut(s) 418, 1344
BssMI GATC 3 cut(s) 175, 826, 976
BssNI GRCGYC 2 cut(s) 81, 272
Bst2UI CCWGG 3 cut(s) 100, 269, 849
Bst4CI ACNGT 3 cut(s) 404, 559, 1051
Bst6I CTCTTC 1 cut(s) 450
BstACI GRCGYC 2 cut(s) 81, 272
BstAPI GCANNNNNTGC 3 cut(s) 24, 882, 1321
BstC8I GCNNGC 2 cut(s) 627, 761
BstDEI CTNAG 3 cut(s) 151, 821, 1044
BstDSI CCRYGG 1 cut(s) 418
BstF5I GGATG 5 cut(s) 104, 195, 706, 861, 1282
BstFNI CGCG 3 cut(s) 243, 330, 637
BstH2I RGCGCY 4 cut(s) 67, 84, 275, 551
BstHHI GCGC 8 cut(s) 66, 83, 243, 274, 550, 625, 637, 876
BstKTI GATC 3 cut(s) 178, 829, 979
BstMAI GTCTC 2 cut(s) 458, 1040
BstMBI GATC 3 cut(s) 175, 826, 976
BstMWI GCNNNNNNNGC 8 cut(s) 24, 213, 388, 481, 765, 882, 1013, 1321
BstNI CCWGG 3 cut(s) 100, 269, 849
BstSCI CCNGG 4 cut(s) 98, 267, 847, 1344
BstUI CGCG 3 cut(s) 243, 330, 637
BstV1I GCAGC 3 cut(s) 53, 432, 537
BstV2I GAAGAC 2 cut(s) 1188, 1233
BstX2I RGATCY 1 cut(s) 826
BstYI RGATCY 1 cut(s) 826
BsuI GTATCC 1 cut(s) 787
BsuRI GGCC 5 cut(s) 173, 267, 333, 423, 659
BtgI CCRYGG 1 cut(s) 418
BtsCI GGATG 5 cut(s) 104, 195, 706, 861, 1282
BtsIMutI CAGTG 1 cut(s) 1254
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 627, 761
CfoI GCGC 8 cut(s) 66, 83, 243, 274, 550, 625, 637, 876
Cfr10I RCCGGY 1 cut(s) 582
Cfr13I GGNCC 4 cut(s) 495, 580, 910, 1092
CseI GACGC 1 cut(s) 232
CsiI ACCWGGT 1 cut(s) 847
Csp6I GTAC 1 cut(s) 1070
CviAII CATG 4 cut(s) 19, 960, 980, 1151
CviQI GTAC 1 cut(s) 1070
DdeI CTNAG 3 cut(s) 151, 821, 1044
DinI GGCGCC 2 cut(s) 82, 273
DpnI GATC 3 cut(s) 177, 828, 978
DpnII GATC 3 cut(s) 175, 826, 976
DrdI GACNNNNNNGTC 1 cut(s) 233
DseDI GACNNNNNNGTC 1 cut(s) 233
EaeI YGGCCR 2 cut(s) 265, 657
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EciI GGCGGA 3 cut(s) 97, 203, 606
Ecl136II GAGCTC 1 cut(s) 313
Eco24I GRGCYC 1 cut(s) 315
Eco31I GGTCTC 1 cut(s) 1040
Eco47I GGWCC 4 cut(s) 495, 580, 910, 1092
Eco53kI GAGCTC 1 cut(s) 313
EcoICRI GAGCTC 1 cut(s) 313
EcoRII CCWGG 3 cut(s) 98, 267, 847
EcoT22I ATGCAT 1 cut(s) 1120
EcoT38I GRGCYC 1 cut(s) 315
EgeI GGCGCC 2 cut(s) 82, 273
EheI GGCGCC 2 cut(s) 82, 273
FaeI CATG 4 cut(s) 22, 963, 983, 1154
FalI AAGNNNNNCTT 2 cut(s) 737, 769
FaqI GGGAC 2 cut(s) 581, 593
FatI CATG 4 cut(s) 18, 959, 979, 1150
FauI CCCGC 1 cut(s) 511
FbaI TGATCA 1 cut(s) 976
FblI GTMKAC 2 cut(s) 165, 294
Fnu4HI GCNGC 8 cut(s) 62, 67, 148, 331, 446, 476, 546, 551
FokI GGATG 5 cut(s) 91, 182, 713, 868, 1289
FriOI GRGCYC 1 cut(s) 315
Fsp4HI GCNGC 8 cut(s) 62, 67, 148, 331, 446, 476, 546, 551
FspBI CTAG 2 cut(s) 587, 1079
GlaI GCGC 8 cut(s) 65, 82, 242, 273, 549, 624, 636, 875
GluI GCNGC 8 cut(s) 62, 67, 148, 331, 446, 476, 546, 551
GsuI CTGGAG 3 cut(s) 888, 1188, 1214
HaeII RGCGCY 4 cut(s) 67, 84, 275, 551
HaeIII GGCC 5 cut(s) 173, 267, 333, 423, 659
HapII CCGG 3 cut(s) 583, 632, 1346
HgaI GACGC 1 cut(s) 232
HhaI GCGC 8 cut(s) 66, 83, 243, 274, 550, 625, 637, 876
Hin1I GRCGYC 2 cut(s) 81, 272
Hin1II CATG 4 cut(s) 22, 963, 983, 1154
Hin6I GCGC 8 cut(s) 64, 81, 241, 272, 548, 623, 635, 874
HinP1I GCGC 8 cut(s) 64, 81, 241, 272, 548, 623, 635, 874
HincII GTYRAC 2 cut(s) 295, 571
HindII GTYRAC 2 cut(s) 295, 571
HindIII AAGCTT 2 cut(s) 818, 1292
HinfI GANTC 4 cut(s) 210, 594, 1307, 1334
HpaII CCGG 3 cut(s) 583, 632, 1346
HphI GGTGA 2 cut(s) 238, 622
Hpy166II GTNNAC 5 cut(s) 166, 295, 415, 571, 1254
Hpy188I TCNGA 5 cut(s) 386, 855, 914, 976, 1045
Hpy188III TCNNGA 7 cut(s) 116, 427, 578, 905, 991, 1205, 1300
Hpy8I GTNNAC 5 cut(s) 166, 295, 415, 571, 1254
Hpy99I CGWCG 5 cut(s) 122, 266, 296, 404, 677
HpyAV CCTTC 5 cut(s) 803, 828, 1006, 1024, 1257
HpyCH4III ACNGT 3 cut(s) 404, 559, 1051
HpyCH4IV ACGT 2 cut(s) 291, 675
HpyCH4V TGCA 6 cut(s) 69, 391, 697, 722, 885, 1118
HpyF10VI GCNNNNNNNGC 8 cut(s) 24, 213, 388, 481, 765, 882, 1013, 1321
HpyF3I CTNAG 3 cut(s) 151, 821, 1044
HpySE526I ACGT 2 cut(s) 291, 675
Hsp92I GRCGYC 2 cut(s) 81, 272
Hsp92II CATG 4 cut(s) 22, 963, 983, 1154
HspAI GCGC 8 cut(s) 64, 81, 241, 272, 548, 623, 635, 874
KasI GGCGCC 2 cut(s) 80, 271
Ksp22I TGATCA 1 cut(s) 976
Kzo9I GATC 3 cut(s) 175, 826, 976
LmnI GCTCC 3 cut(s) 310, 634, 1207
Lsp1109I GCAGC 3 cut(s) 53, 432, 537
LweI GCATC 2 cut(s) 1105, 1324
MabI ACCWGGT 1 cut(s) 847
MaeI CTAG 2 cut(s) 587, 1079
MaeII ACGT 2 cut(s) 291, 675
MaeIII GTNAC 5 cut(s) 244, 353, 521, 1051, 1156
MalI GATC 3 cut(s) 177, 828, 978
MboI GATC 3 cut(s) 175, 826, 976
MboII GAAGA 4 cut(s) 467, 746, 1193, 1238
MflI RGATCY 1 cut(s) 826
MhlI GDGCHC 1 cut(s) 315
MluCI AATT 4 cut(s) 337, 499, 652, 984
Mly113I GGCGCC 2 cut(s) 81, 272
MlyI GAGTC 2 cut(s) 603, 1316
MmeI TCCRAC 1 cut(s) 833
Mph1103I ATGCAT 1 cut(s) 1120
MseI TTAA 2 cut(s) 450, 1022
MslI CAYNNNNRTG 1 cut(s) 1113
MspI CCGG 3 cut(s) 583, 632, 1346
MspR9I CCNGG 4 cut(s) 100, 269, 849, 1346
Mva1269I GAATGC 1 cut(s) 393
MvaI CCWGG 3 cut(s) 100, 269, 849
MvnI CGCG 3 cut(s) 243, 330, 637
MwoI GCNNNNNNNGC 8 cut(s) 24, 213, 388, 481, 765, 882, 1013, 1321
NarI GGCGCC 2 cut(s) 81, 272
NciI CCSGG 1 cut(s) 1346
NdeII GATC 3 cut(s) 175, 826, 976
NlaIII CATG 4 cut(s) 22, 963, 983, 1154
NlaIV GGNNCC 6 cut(s) 82, 273, 496, 581, 828, 1203
NmuCI GTSAC 3 cut(s) 244, 353, 521
NsiI ATGCAT 1 cut(s) 1120
PaqCI CACCTGC 1 cut(s) 212
PcsI WCGNNNNNNNCGW 5 cut(s) 84, 165, 258, 297, 459
PctI GAATGC 1 cut(s) 393
PfeI GAWTC 2 cut(s) 210, 1334
PflMI CCANNNNNTGG 2 cut(s) 1192, 1211
PkrI GCNGC 8 cut(s) 63, 68, 149, 332, 447, 477, 547, 552
PleI GAGTC 2 cut(s) 602, 1315
PluTI GGCGCC 2 cut(s) 84, 275
PpsI GAGTC 2 cut(s) 602, 1315
Psp124BI GAGCTC 1 cut(s) 315
Psp6I CCWGG 3 cut(s) 98, 267, 847
PspGI CCWGG 3 cut(s) 98, 267, 847
PspN4I GGNNCC 6 cut(s) 82, 273, 496, 581, 828, 1203
PspPI GGNCC 4 cut(s) 495, 580, 910, 1092
PsuI RGATCY 1 cut(s) 826
RsaI GTAC 1 cut(s) 1071
RsaNI GTAC 1 cut(s) 1070
RseI CAYNNNNRTG 1 cut(s) 1113
SacI GAGCTC 1 cut(s) 315
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 2 cut(s) 450, 1022
SatI GCNGC 8 cut(s) 62, 67, 148, 331, 446, 476, 546, 551
Sau3AI GATC 3 cut(s) 175, 826, 976
Sau96I GGNCC 4 cut(s) 495, 580, 910, 1092
SchI GAGTC 2 cut(s) 603, 1316
ScrFI CCNGG 4 cut(s) 100, 269, 849, 1346
SduI GDGCHC 1 cut(s) 315
SexAI ACCWGGT 1 cut(s) 847
SfaNI GCATC 2 cut(s) 1105, 1324
SfoI GGCGCC 2 cut(s) 82, 273
SinI GGWCC 4 cut(s) 495, 580, 910, 1092
SmiMI CAYNNNNRTG 1 cut(s) 1113
Sse9I AATT 4 cut(s) 337, 499, 652, 984
SspDI GGCGCC 2 cut(s) 80, 271
SspMI CTAG 2 cut(s) 587, 1079
SstI GAGCTC 1 cut(s) 315
StyD4I CCNGG 4 cut(s) 98, 267, 847, 1344
TaaI ACNGT 3 cut(s) 404, 559, 1051
TaiI ACGT 2 cut(s) 294, 678
TaqI TCGA 6 cut(s) 126, 294, 372, 399, 486, 1247
TasI AATT 4 cut(s) 337, 499, 652, 984
TatI WGTACW 1 cut(s) 1069
TauI GCSGC 5 cut(s) 64, 150, 333, 478, 548
TfiI GAWTC 2 cut(s) 210, 1334
Tru1I TTAA 2 cut(s) 450, 1022
Tru9I TTAA 2 cut(s) 450, 1022
TscAI CASTG 1 cut(s) 1261
TseFI GTSAC 3 cut(s) 244, 353, 521
TseI GCWGC 3 cut(s) 66, 445, 550
Tsp45I GTSAC 3 cut(s) 244, 353, 521
TspDTI ATGAA 3 cut(s) 184, 790, 1043
TspRI CASTG 1 cut(s) 1261
Van91I CCANNNNNTGG 2 cut(s) 1192, 1211
VpaK11BI GGWCC 4 cut(s) 495, 580, 910, 1092
XapI RAATTY 1 cut(s) 652
XcmI CCANNNNNNNNNTGG 1 cut(s) 505
XmiI GTMKAC 2 cut(s) 165, 294
XspI CTAG 2 cut(s) 587, 1079
Zsp2I ATGCAT 1 cut(s) 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.