Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009784

Physical Location & Seq

Genomic Coordinates Forward (+)

15409684 .. 15411601

Gene Structure 1918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCGACAAGGGAAGAGAATGTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTACGAAGAAATGGTTGAATTCATGGAGAAAGTTGCGAAAACTGTTGATGTTGAGGAACTTTCAGTTGAAGAGAGGAATCTTCTCTCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTGGAGAATCATTTCTTCGATTGAGCAGAAAGAAGAGAGCAAAGGGAACGAAGATCATGTTGCTATTATCAAGGATTACAGAGGAAAGATTGAATCCGAGCTTAGCAAAATCTGTGATGGGATTTTGAATGTTCTTGAAGCTCATCTTATTCCTTCTGCTTCACCAGCTGAATCTAAAGTGTTTTATCTTAAGATGAAGGGTGATTATCATAGGTATCTTGCTGAGTTTAAGGCTGGTGCTGAAAGGAAAGAAGCTGCTGAAAGCACTTTGGTTGCTTACAAGTCTGCTTCCGACATTGCCACTGCTGAGTTAGCTCCTACTCACCCGATAAGGCTTGGTCTTGCACTCAACTTCTCTGTGTTTTACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCGCAAAGCAGGCGTTTGATGATGCAATCGCTGAGTTAGATACATTGGGTGAGGAATCATACAAGGACAGTACACTGATTATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGATATGACTGACGAAGCAGGAGATGAGATTAAGGAGGCATCAAAGCCCGATGGTGCCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005773 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006995 GO:0007154 GO:0008144 GO:0008150 GO:0009266 GO:0009267 GO:0009409 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009628 GO:0009631 GO:0009987 GO:0009991 GO:0012505 GO:0016020 GO:0016036 GO:0017076 GO:0019222 GO:0030054 GO:0030312 GO:0030554 GO:0031667 GO:0031668 GO:0031669 GO:0032553 GO:0032555 GO:0032559 GO:0033554 GO:0035639 GO:0036094 GO:0042594 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043562 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050826 GO:0050896 GO:0051365 GO:0051716 GO:0055044 GO:0065007 GO:0071496 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04011 ko04110 ko04114 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04151 map04390 map04391 map04722 map05169 map05203

Pfam Domains

Protein Families

14-3-3

Protein Analysis

255

Amino Acids

28.61

Weight (kDa)

4.75

Isoelectric Point (pI)

41.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
14-3-3	PF00244	10 - 234	8.1e-106	14-3-3 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009784)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02520 AT3G02520 AT5G16050 AT5G16050 AT5G38480 AT5G38480 AT5G38480
fragaria_vesca	FvH4_6g45301
malus_domestica	MD07G1096000.v1.1 MD17G1074900.v1.1 MD17G1105100.v1.1
prunus_persica	Prupe.3G239000_v2.0.a1
pyrus_communis	pycom09g01110
rosa_chinensis	RchiOBHm_Chr2g0163061
rosa_laevigata	RLG00000021368
rosa_multiflora	Rmu_sc0003984.1_g000004
rosa_roxburghii	Rroxscaffold_2G00087580
rosa_rugosa	Rorug02G0500100
rosa_samantha	Rh2AG566400 Rh2BG578800
rosa_wichuraiana	Rw2G046890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	758
AccI	GTMKAC	1 cut(s)	5
AclI	AACGTT	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	74
AcuI	CTGAAG	1 cut(s)	687
AfaI	GTAC	1 cut(s)	658
AflII	CTTAAG	1 cut(s)	371
AgsI	TTSAA	5 cut(s)	74, 125, 275, 310, 320
AluBI	AGCT	8 cut(s)	50, 179, 283, 323, 350, 437, 497, 673
AluI	AGCT	8 cut(s)	50, 179, 283, 323, 350, 437, 497, 673
Alw26I	GTCTC	1 cut(s)	675
ApeKI	GCWGC	3 cut(s)	437, 582, 670
ApoI	RAATTY	1 cut(s)	74
Asp700I	GAANNNNTTC	2 cut(s)	178, 193
AsuHPI	GGTGA	4 cut(s)	336, 395, 497, 647
BanI	GGYRCC	1 cut(s)	758
BbvI	GCAGC	3 cut(s)	424, 594, 682
BccI	CCATC	2 cut(s)	293, 749
BcoDI	GTCTC	1 cut(s)	675
BfrI	CTTAAG	1 cut(s)	371
BisI	GCNGC	3 cut(s)	438, 583, 671
BlpI	GCTNAGC	1 cut(s)	284
BlsI	GCNGC	3 cut(s)	439, 584, 672
BmiI	GGNNCC	1 cut(s)	760
BmsI	GCATC	2 cut(s)	598, 752
BplI	GAGNNNNNCTC	2 cut(s)	672, 704
Bpu1102I	GCTNAGC	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	477
BseMI	GCAATG	1 cut(s)	477
BseMII	CTCAG	3 cut(s)	396, 480, 609
BseXI	GCAGC	3 cut(s)	424, 594, 682
BshNI	GGYRCC	1 cut(s)	758
BsmAI	GTCTC	1 cut(s)	675
Bsp143I	GATC	2 cut(s)	235, 571
Bsp1720I	GCTNAGC	1 cut(s)	284
BspCNI	CTCAG	3 cut(s)	397, 481, 610
BspLI	GGNNCC	1 cut(s)	760
BspQI	GCTCTTC	1 cut(s)	169
BspT107I	GGYRCC	1 cut(s)	758
BspTI	CTTAAG	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	477
BssMI	GATC	2 cut(s)	235, 571
Bst4CI	ACNGT	2 cut(s)	100, 656
Bst6I	CTCTTC	4 cut(s)	9, 120, 169, 210
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	580, 597
BstDEI	CTNAG	5 cut(s)	284, 405, 489, 618, 677
BstKTI	GATC	2 cut(s)	238, 574
BstMAI	GTCTC	1 cut(s)	675
BstMBI	GATC	2 cut(s)	235, 571
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 47, 176, 347, 494, 596
BstV1I	GCAGC	3 cut(s)	424, 594, 682
BtsI	GCAGTG	1 cut(s)	483
BtsIMutI	CAGTG	2 cut(s)	483, 659
Cac8I	GCNNGC	2 cut(s)	580, 597
Csp6I	GTAC	1 cut(s)	657
CviAII	CATG	3 cut(s)	28, 79, 239
CviQI	GTAC	1 cut(s)	657
DdeI	CTNAG	5 cut(s)	284, 405, 489, 618, 677
DpnI	GATC	2 cut(s)	237, 573
DpnII	GATC	2 cut(s)	235, 571
Eam1104I	CTCTTC	4 cut(s)	9, 120, 169, 210
EarI	CTCTTC	4 cut(s)	9, 120, 169, 210
Eco57I	CTGAAG	1 cut(s)	687
EcoRI	GAATTC	1 cut(s)	74
FaeI	CATG	3 cut(s)	31, 82, 242
FaiI	YATR	8 cut(s)	29, 80, 240, 393, 552, 646, 668, 710
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
FatI	CATG	3 cut(s)	27, 78, 238
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	3 cut(s)	438, 583, 671
Fsp4HI	GCNGC	3 cut(s)	438, 583, 671
GluI	GCNGC	3 cut(s)	438, 583, 671
Hin1II	CATG	3 cut(s)	31, 82, 242
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	5 cut(s)	133, 189, 275, 353, 641
HphI	GGTGA	4 cut(s)	336, 395, 497, 647
Hpy166II	GTNNAC	3 cut(s)	6, 25, 659
Hpy188I	TCNGA	3 cut(s)	280, 475, 706
Hpy188III	TCNNGA	2 cut(s)	317, 697
Hpy8I	GTNNAC	3 cut(s)	6, 25, 659
HpyAV	CCTTC	2 cut(s)	345, 373
HpyCH4III	ACNGT	2 cut(s)	100, 656
HpyCH4IV	ACGT	2 cut(s)	55, 159
HpyCH4V	TGCA	4 cut(s)	527, 582, 611, 670
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 47, 176, 347, 494, 596
HpyF3I	CTNAG	5 cut(s)	284, 405, 489, 618, 677
HpySE526I	ACGT	2 cut(s)	55, 159
Hsp92II	CATG	3 cut(s)	31, 82, 242
Kzo9I	GATC	2 cut(s)	235, 571
LguI	GCTCTTC	1 cut(s)	169
LmnI	GCTCC	2 cut(s)	167, 502
LpnPI	CCDG	6 cut(s)	360, 402, 581, 582, 682, 708
Lsp1109I	GCAGC	3 cut(s)	424, 594, 682
LweI	GCATC	2 cut(s)	598, 752
MaeII	ACGT	2 cut(s)	55, 159
MaeIII	GTNAC	1 cut(s)	56
MalI	GATC	2 cut(s)	237, 573
MboI	GATC	2 cut(s)	235, 571
MboII	GAAGA	8 cut(s)	26, 74, 128, 137, 186, 189, 227, 245
MluCI	AATT	2 cut(s)	35, 74
MmeI	TCCRAC	1 cut(s)	498
MnlI	CCTC	7 cut(s)	103, 123, 257, 569, 596, 631, 733
MroXI	GAANNNNTTC	2 cut(s)	178, 193
MseI	TTAA	3 cut(s)	372, 411, 735
MspA1I	CMGCKG	1 cut(s)	350
MspCI	CTTAAG	1 cut(s)	371
MwoI	GCNNNNNNNGC	6 cut(s)	38, 47, 176, 347, 494, 596
NdeII	GATC	2 cut(s)	235, 571
NlaIII	CATG	3 cut(s)	31, 82, 242
NlaIV	GGNNCC	1 cut(s)	760
PciSI	GCTCTTC	1 cut(s)	169
PdmI	GAANNNNTTC	2 cut(s)	178, 193
PfeI	GAWTC	5 cut(s)	133, 189, 275, 353, 641
PkrI	GCNGC	3 cut(s)	439, 584, 672
Psp1406I	AACGTT	1 cut(s)	55
PspN4I	GGNNCC	1 cut(s)	760
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	658
RsaNI	GTAC	1 cut(s)	657
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	169
SaqAI	TTAA	3 cut(s)	372, 411, 735
SatI	GCNGC	3 cut(s)	438, 583, 671
Sau3AI	GATC	2 cut(s)	235, 571
SfaNI	GCATC	2 cut(s)	598, 752
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	2 cut(s)	35, 74
TaaI	ACNGT	2 cut(s)	100, 656
TaiI	ACGT	2 cut(s)	58, 162
TaqI	TCGA	2 cut(s)	5, 200
TasI	AATT	2 cut(s)	35, 74
TatI	WGTACW	1 cut(s)	656
TfiI	GAWTC	5 cut(s)	133, 189, 275, 353, 641
Tru1I	TTAA	3 cut(s)	372, 411, 735
Tru9I	TTAA	3 cut(s)	372, 411, 735
TscAI	CASTG	2 cut(s)	490, 666
TseI	GCWGC	3 cut(s)	437, 582, 670
TspDTI	ATGAA	3 cut(s)	67, 392, 567
TspRI	CASTG	2 cut(s)	490, 666
Vha464I	CTTAAG	1 cut(s)	371
XapI	RAATTY	1 cut(s)	74
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	2 cut(s)	178, 193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.