Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008433

Physical Location & Seq

Genomic Coordinates Forward (+)

63263794 .. 63269959

Gene Structure 6166 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0500100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2316 bp

ATGAGGCTACCAACACCTGGCCTTTGCCTCCTCTCTTTTCTTCTCTCTTCTCTAGTACTCCACAGACCCACCTTTGCTATCAAAAAGTCATATGTGGTGTACTTTGGAGCTCACTCACACCCTCCAAACTTTTCAGAACTTGAACTAACCCGAGTGAGAGAGAATCACTGTGAGTTTCTTGGATCATTCTTGGGCAGCCATGAAGTTGCAAAAGACTCCATCTTTTACTCATACTCAAGGCACATCAATGGCTTTGCTGCCACATTAGAAGAAGAAGATGCAGCTCAGATAGCTAAGCATCCAAAGGTAATCTCAGTTTTCTTGAACAAGGGAAGAAAGTTACACACAACTAGATCATGGGATTTCTTGGGACTTGAGCATAATGGTGTTACTCCCCCAAATTCAATTTGGGAGAAGGCAAGATATGGTGAAGATACAATTATAGCAAACCTTGATACTGGGGCATGGCCAGAATCCAAGAGCTTTAGTGATGAAGGGTATGGACCGATTCCATCTAAGTGGAAAGGAATCTGCCAAAATGAGGCAGATTCTGAATTTCACTGCAACAGGAAGCTAATTGGAGCGAGATACTTCAACAAAGGCTTTGCTGCAGTGGTCGGACCCCTCAACTCCTCCTTCCAATCACCGCGCGATGAGGAAGGCCACGGCTCTCACACCTTGTCAACAGCGGGTGGCAACTTTGTGACCGGGGCAAGTGTGTTTGGCTTTGGAAATGGAACAGCAAAAGGTGGATCACCAAAAGCTAGGGTTGCAGCTTACAAGGTGTGTTGGCCTCCAGTGAATGGAAGTGAGTGCTTTGAAGCAGATATATTAGCTGCATTCGACATGGCGATACATGATGGTGTTGATGTGCTGTCTGTATCACTTGGTGGAGATGCCACTGCATTTTTCAACGATAGTGTTGCAATTGGATCTTTTCATGCTGTTAAGCATGGCATTGTGGTGGTTTGCTCAGCTGGGAATTCTGGTCCAGATGATGCTACTGTGTCCAATGTAGCGGTGTGGCAGATCACAGTAGGTGCTAGTACTATGGATAGGGAGTTCCCTACTTATATCACTCTTGGCAACTGGAAACACTCCAAGGGACAAAGCTTATCAGCTGTGGCCTTGCCAAGCAAAAGGTTCTATCCACTTATAAGTGCTGCAGATGCTAAAGCGGCTAATACATCTGTTCAACAAGCTCTGCTGTGCAAGGCTGGAACGCTTGATCCAGAAAAGGTTAAGGGAAAGATCTTGGCCTGCCTTCGAGGGGACAATGCAAGAGTGGACAAGGGTGAACAAGCCTTACTTGCTGGTGCTGTGGGGATGATTCTTGCTAACAGTGAAGTTAACGGGAATGAAATTATCTCCGATCCACATGTCCTCCCTGCTTCACATATCAATTTCACCGATGGCTCCCTTGTCTTTGCTTACATCAACTCAACCAAGTCTCCTAGAGCTTACATAAAACGTCCAACTACGCAATTGGGTACAAAACCAGCTCCATTCATGGCGGCATTTTCATCAAAGGGACCTAGCACCATTACACCAGATATCCTTAAGCCTGATATCACTGCACCAGGAGTGAGTGTTATAGCAGCCTACACTGAAGCAGAAGGGCCAACAAATCAAGAGTTTGACAGAAGGCGAATTCCATTCAACTCGGTGTCAGGCACATCTATGTCTTGTCCACACATTGCAGGCGTTGTTGGCCTTCTAAAAACCCTCTATCCTCACTGGAGTCCTGCAGCTATTAAATCTGCAATTATGACCACAGCAAAAACACAAGATAATAGCAGGGAACCAGTGCTCAATGCTTCAAACTCTGAGGCAACACCATTTAGTTATGGAGCAGGACATGTTAATCCAAATAGTGCTATGGATCCTGGGTTGGTGTACGATTTAGACACTGATGATTACTTGAATTTGCTATGCGCATTGGGATACAATGAAACACAAATCGAAACATTCTCACAGGAGCCCTACAAATGCCCCAACCCTGCTATTAGTCTCGCAAACCTCAACTACCCCTCAATCACTGTCCCTAAACTCTCTGGCTCCCTTGTTGTGACGAGAACACTGAAAAATGTTGGAGAACCGGGAACTTATAAGGCACGCATCACAAACCCAGATGGTATATTGGTTTCTGTTGAGCCAAAGAGCTTGGAGTTCAAGAAGGTTGGTGAAGAAAAGAGCTTCAGTGTGGTCCTGGAGGCTAAAGATGGCAAAGCAGCAAAAAACTACGTATTTGGAAAGTTGATATGGTCAGATGGTAAGCACAATGTAAGGAGTCCCATTGTGATAAAGGCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1

Protein Analysis

771

Amino Acids

82.71

Weight (kDa)

7.31

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I9	PF05922	30 - 115	8.1e-16	Peptidase inhibitor I9
Peptidase_S8	PF00082	144 - 619	2.1e-38	Subtilase family
PA	PF02225	400 - 473	2.2e-11	PA domain
fn3_6	PF17766	673 - 768	1.1e-31	Fibronectin type-III domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02510 AT3G02510 AT3G02510 AT5G16040 AT5G16040
fragaria_vesca	FvH4_6g45310
malus_domestica	MD07G1096100.v1.1 MD09G1085900.v1.1 MD17G1074800.v1.1
prunus_persica	Prupe.3G239200_v2.0.a1 Prupe.3G239200_v2.0.a1
pyrus_communis	pycom09g01100 pycom17g07550
rosa_chinensis	RchiOBHm_Chr2g0163071
rosa_laevigata	RLG00000021369
rosa_multiflora	Rmu_sc0003555.1_g000021 Rmu_sc0003984.1_g000005
rosa_roxburghii	Rroxscaffold_2G00087570
rosa_rugosa	Rorug02G0500100
rosa_samantha	Rh2AG566500 Rh2BG578900 Rh2DG589200
rosa_wichuraiana	Rw2G046900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1157, 2109
Acc16I	TGCGCA	1 cut(s)	1936
AccB7I	CCANNNNNTGG	2 cut(s)	17, 803
AccII	CGCG	2 cut(s)	649, 651
AciI	CCGC	6 cut(s)	647, 689, 1019, 1178, 1514, 2309
AclWI	GGATC	7 cut(s)	190, 760, 940, 1223, 1367, 1877, 1890
AcoI	YGGCCR	1 cut(s)	467
AcsI	RAATTY	5 cut(s)	400, 554, 982, 1650, 1924
AcuI	CTGAAG	2 cut(s)	1629, 2182
AdeI	CACNNNGTG	1 cut(s)	890
AfaI	GTAC	5 cut(s)	57, 101, 1048, 1492, 1898
AfiI	CCNNNNNNNGG	4 cut(s)	17, 541, 803, 1270
AflII	CTTAAG	1 cut(s)	1559
AflIII	ACRYGT	2 cut(s)	1378, 1858
AjnI	CCWGG	4 cut(s)	16, 1579, 1885, 2208
AloI	GAACNNNNNNTCC	4 cut(s)	1046, 1078, 1213, 1245
Alw21I	GWGCWC	2 cut(s)	112, 1812
Alw26I	GTCTC	2 cut(s)	1455, 2015
AlwI	GGATC	7 cut(s)	190, 760, 940, 1223, 1367, 1877, 1890
AlwNI	CAGNNNCTG	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	9 cut(s)	19, 467, 661, 791, 1125, 1257, 1619, 1711, 2310
ApoI	RAATTY	5 cut(s)	400, 554, 982, 1650, 1924
AspLEI	GCGC	2 cut(s)	651, 1937
AspS9I	GGNCC	6 cut(s)	503, 620, 989, 1532, 1619, 2206
AsuC2I	CCSGG	2 cut(s)	709, 2100
AsuHPI	GGTGA	6 cut(s)	440, 636, 747, 1307, 1399, 2195
AvaI	CYCGRG	1 cut(s)	150
AvaII	GGWCC	5 cut(s)	503, 620, 989, 1532, 2206
BalI	TGGCCA	1 cut(s)	469
BamHI	GGATCC	1 cut(s)	1882
BanII	GRGCYC	2 cut(s)	112, 1983
Bbv12I	GWGCWC	2 cut(s)	112, 1812
BccI	CCATC	7 cut(s)	227, 520, 854, 1406, 2126, 2216, 2264
BceAI	ACGGC	1 cut(s)	682
BcgI	CGANNNNNNTGC	2 cut(s)	905, 939
BciT130I	CCWGG	4 cut(s)	18, 1581, 1887, 2210
BciVI	GTATCC	1 cut(s)	1937
BcnI	CCSGG	2 cut(s)	709, 2100
BcoDI	GTCTC	2 cut(s)	1455, 2015
BfaI	CTAG	7 cut(s)	53, 351, 765, 1044, 1455, 1536, 2314
BfmI	CTRYAG	3 cut(s)	609, 1164, 1746
BfrI	CTTAAG	1 cut(s)	1559
BfuI	GTATCC	1 cut(s)	1937
BglII	AGATCT	1 cut(s)	1251
BlpI	GCTNAGC	2 cut(s)	294, 973
BmcAI	AGTACT	2 cut(s)	57, 1048
Bme1390I	CCNGG	6 cut(s)	18, 709, 1581, 1887, 2100, 2210
Bme18I	GGWCC	5 cut(s)	503, 620, 989, 1532, 2206
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	6 cut(s)	503, 620, 989, 1532, 1619, 2206
BmiI	GGNNCC	7 cut(s)	622, 1417, 1533, 1803, 1884, 1980, 2059
BmrFI	CCNGG	6 cut(s)	18, 709, 1581, 1887, 2100, 2210
BmrI	ACTGGG	1 cut(s)	468
BmsI	GCATC	6 cut(s)	268, 307, 886, 988, 1159, 2127
BmuI	ACTGGG	1 cut(s)	468
BpmI	CTGGAG	3 cut(s)	780, 1759, 2231
Bpu1102I	GCTNAGC	2 cut(s)	294, 973
BpuEI	CTTGAG	2 cut(s)	220, 395
BpuMI	CCSGG	2 cut(s)	709, 2100
BsaAI	YACGTR	1 cut(s)	2245
BsaJI	CCNNGG	4 cut(s)	664, 708, 1101, 1886
BsaXI	ACNNNNNCTCC	6 cut(s)	1368, 1398, 1435, 1465, 1575, 1605
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 541, 803, 1270
Bse1I	ACTGG	5 cut(s)	463, 797, 1094, 1742, 1805
Bse3DI	GCAATG	1 cut(s)	1695
BseBI	CCWGG	4 cut(s)	18, 1581, 1887, 2210
BseDI	CCNNGG	4 cut(s)	664, 708, 1101, 1886
BseGI	GGATG	2 cut(s)	298, 1332
BseLI	CCNNNNNNNGG	4 cut(s)	17, 541, 803, 1270
BseMI	GCAATG	1 cut(s)	1695
BseMII	CTCAG	4 cut(s)	299, 327, 987, 1818
BseNI	ACTGG	5 cut(s)	463, 797, 1094, 1742, 1805
BseRI	GAGGAG	2 cut(s)	20, 622
BseYI	CCCAGC	1 cut(s)	977
BsgI	GTGCAG	1 cut(s)	1560
Bsh1236I	CGCG	2 cut(s)	649, 651
BshFI	GGCC	9 cut(s)	21, 469, 663, 793, 1127, 1259, 1621, 1713, 2312
BsiHKAI	GWGCWC	2 cut(s)	112, 1812
BsiHKCI	CYCGRG	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	708, 2099
BslFI	GGGAC	6 cut(s)	384, 1119, 1286, 1545, 2027, 2277
BslI	CCNNNNNNNGG	4 cut(s)	17, 541, 803, 1270
BsmAI	GTCTC	2 cut(s)	1455, 2015
BsmFI	GGGAC	6 cut(s)	384, 1119, 1286, 1545, 2027, 2277
BsmI	GAATGC	1 cut(s)	839
BsnI	GGCC	9 cut(s)	21, 469, 663, 793, 1127, 1259, 1621, 1713, 2312
BsoBI	CYCGRG	1 cut(s)	150
Bsp1286I	GDGCHC	3 cut(s)	112, 1812, 1983
Bsp143I	GATC	9 cut(s)	182, 353, 752, 932, 1029, 1228, 1251, 1372, 1882
Bsp1720I	GCTNAGC	2 cut(s)	294, 973
BspACI	CCGC	6 cut(s)	647, 689, 1019, 1178, 1514, 2309
BspANI	GGCC	9 cut(s)	21, 469, 663, 793, 1127, 1259, 1621, 1713, 2312
BspCNI	CTCAG	4 cut(s)	298, 326, 986, 1819
BspFNI	CGCG	2 cut(s)	649, 651
BspLI	GGNNCC	7 cut(s)	622, 1417, 1533, 1803, 1884, 1980, 2059
BspMAI	CTGCAG	3 cut(s)	613, 1168, 1750
BspPI	GGATC	7 cut(s)	190, 760, 940, 1223, 1367, 1877, 1890
BspTI	CTTAAG	1 cut(s)	1559
BsrDI	GCAATG	1 cut(s)	1695
BsrI	ACTGG	5 cut(s)	463, 797, 1094, 1742, 1805
BssECI	CCNNGG	4 cut(s)	664, 708, 1101, 1886
BssMI	GATC	9 cut(s)	182, 353, 752, 932, 1029, 1228, 1251, 1372, 1882
BssT1I	CCWWGG	1 cut(s)	1101
Bst2UI	CCWGG	4 cut(s)	18, 1581, 1887, 2210
Bst4CI	ACNGT	5 cut(s)	170, 1006, 1036, 1343, 2041
Bst6I	CTCTTC	1 cut(s)	52
BstAFI	CTTAAG	1 cut(s)	1559
BstBAI	YACGTR	1 cut(s)	2245
BstC8I	GCNNGC	3 cut(s)	1261, 1702, 2116
BstDEI	CTNAG	6 cut(s)	285, 294, 313, 516, 973, 1827
BstDSI	CCRYGG	1 cut(s)	664
BstF5I	GGATG	2 cut(s)	298, 1332
BstFNI	CGCG	2 cut(s)	649, 651
BstHHI	GCGC	2 cut(s)	651, 1937
BstKTI	GATC	9 cut(s)	185, 356, 755, 935, 1032, 1231, 1254, 1375, 1885
BstMAI	GTCTC	2 cut(s)	1455, 2015
BstMBI	GATC	9 cut(s)	182, 353, 752, 932, 1029, 1228, 1251, 1372, 1882
BstMWI	GCNNNNNNNGC	6 cut(s)	290, 770, 1169, 1178, 1310, 1710
BstNI	CCWGG	4 cut(s)	18, 1581, 1887, 2210
BstNSI	RCATGY	2 cut(s)	1382, 1862
BstSCI	CCNGG	6 cut(s)	16, 707, 1579, 1885, 2098, 2208
BstSFI	CTRYAG	3 cut(s)	609, 1164, 1746
BstSNI	TACGTA	1 cut(s)	2245
BstUI	CGCG	2 cut(s)	649, 651
BstX2I	RGATCY	3 cut(s)	932, 1251, 1882
BstXI	CCANNNNNNTGG	1 cut(s)	519
BstYI	RGATCY	3 cut(s)	932, 1251, 1882
BsuI	GTATCC	1 cut(s)	1937
BsuRI	GGCC	9 cut(s)	21, 469, 663, 793, 1127, 1259, 1621, 1713, 2312
BtgI	CCRYGG	1 cut(s)	664
BtgZI	GCGATG	1 cut(s)	666
BtsCI	GGATG	2 cut(s)	298, 1332
BtsI	GCAGTG	4 cut(s)	559, 618, 900, 1572
Cac8I	GCNNGC	3 cut(s)	1261, 1702, 2116
CaiI	CAGNNNCTG	1 cut(s)	551
CfoI	GCGC	2 cut(s)	651, 1937
Cfr13I	GGNCC	6 cut(s)	503, 620, 989, 1532, 1619, 2206
Csp6I	GTAC	5 cut(s)	56, 100, 1047, 1491, 1897
CviQI	GTAC	5 cut(s)	56, 100, 1047, 1491, 1897
DdeI	CTNAG	6 cut(s)	285, 294, 313, 516, 973, 1827
DpnI	GATC	9 cut(s)	184, 355, 754, 934, 1031, 1230, 1253, 1374, 1884
DpnII	GATC	9 cut(s)	182, 353, 752, 932, 1029, 1228, 1251, 1372, 1882
DraIII	CACNNNGTG	1 cut(s)	890
EaeI	YGGCCR	1 cut(s)	467
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	110
Eco105I	TACGTA	1 cut(s)	2245
Eco130I	CCWWGG	1 cut(s)	1101
Eco24I	GRGCYC	2 cut(s)	112, 1983
Eco32I	GATATC	2 cut(s)	1555, 1570
Eco47I	GGWCC	5 cut(s)	503, 620, 989, 1532, 2206
Eco53kI	GAGCTC	1 cut(s)	110
Eco57I	CTGAAG	2 cut(s)	1629, 2182
Eco88I	CYCGRG	1 cut(s)	150
EcoICRI	GAGCTC	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	1532
EcoRI	GAATTC	2 cut(s)	982, 1650
EcoRII	CCWGG	4 cut(s)	16, 1579, 1885, 2208
EcoRV	GATATC	2 cut(s)	1555, 1570
EcoT14I	CCWWGG	1 cut(s)	1101
EcoT38I	GRGCYC	2 cut(s)	112, 1983
ErhI	CCWWGG	1 cut(s)	1101
FalI	AAGNNNNNCTT	2 cut(s)	1293, 1325
FaqI	GGGAC	6 cut(s)	384, 1119, 1286, 1545, 2027, 2277
FauI	CCCGC	1 cut(s)	682
FauNDI	CATATG	1 cut(s)	91
FokI	GGATG	2 cut(s)	285, 1339
FriOI	GRGCYC	2 cut(s)	112, 1983
FspAI	RTGCGCAY	1 cut(s)	1936
FspBI	CTAG	7 cut(s)	53, 351, 765, 1044, 1455, 1536, 2314
FspI	TGCGCA	1 cut(s)	1936
GlaI	GCGC	2 cut(s)	650, 1936
GsaI	CCCAGC	1 cut(s)	981
GsuI	CTGGAG	3 cut(s)	780, 1759, 2231
HaeIII	GGCC	9 cut(s)	21, 469, 663, 793, 1127, 1259, 1621, 1713, 2312
HapII	CCGG	2 cut(s)	708, 2099
HhaI	GCGC	2 cut(s)	651, 1937
Hin6I	GCGC	2 cut(s)	649, 1935
HinP1I	GCGC	2 cut(s)	649, 1935
HincII	GTYRAC	2 cut(s)	684, 1351
HindII	GTYRAC	2 cut(s)	684, 1351
HindIII	AAGCTT	1 cut(s)	1111
HinfI	GANTC	9 cut(s)	163, 215, 473, 508, 528, 548, 1330, 1741, 2290
HpaI	GTTAAC	1 cut(s)	1351
HpaII	CCGG	2 cut(s)	708, 2099
HphI	GGTGA	6 cut(s)	440, 636, 747, 1307, 1399, 2195
Hpy166II	GTNNAC	7 cut(s)	100, 684, 1288, 1298, 1351, 1691, 1897
Hpy188I	TCNGA	7 cut(s)	136, 288, 553, 620, 1372, 1828, 2269
Hpy188III	TCNNGA	5 cut(s)	322, 992, 1232, 1631, 2173
Hpy8I	GTNNAC	7 cut(s)	100, 684, 1288, 1298, 1351, 1691, 1897
HpyAV	CCTTC	9 cut(s)	409, 488, 646, 653, 1274, 1610, 1638, 1724, 2170
HpyCH4III	ACNGT	5 cut(s)	170, 1006, 1036, 1343, 2041
HpyCH4IV	ACGT	2 cut(s)	1471, 2244
HpyF10VI	GCNNNNNNNGC	6 cut(s)	290, 770, 1169, 1178, 1310, 1710
HpyF3I	CTNAG	6 cut(s)	285, 294, 313, 516, 973, 1827
HpySE526I	ACGT	2 cut(s)	1471, 2244
HspAI	GCGC	2 cut(s)	649, 1935
KspAI	GTTAAC	1 cut(s)	1351
Kzo9I	GATC	9 cut(s)	182, 353, 752, 932, 1029, 1228, 1251, 1372, 1882
LmnI	GCTCC	7 cut(s)	107, 581, 1421, 1507, 1850, 1978, 2063
LweI	GCATC	6 cut(s)	268, 307, 886, 988, 1159, 2127
MaeI	CTAG	7 cut(s)	53, 351, 765, 1044, 1455, 1536, 2314
MaeII	ACGT	2 cut(s)	1471, 2244
MaeIII	GTNAC	4 cut(s)	339, 388, 703, 2068
MalI	GATC	9 cut(s)	184, 355, 754, 934, 1031, 1230, 1253, 1374, 1884
MboI	GATC	9 cut(s)	182, 353, 752, 932, 1029, 1228, 1251, 1372, 1882
MboII	GAAGA	8 cut(s)	32, 39, 281, 284, 287, 345, 443, 2198
MfeI	CAATTG	2 cut(s)	927, 1484
MflI	RGATCY	3 cut(s)	932, 1251, 1882
MhlI	GDGCHC	3 cut(s)	112, 1812, 1983
MlsI	TGGCCA	1 cut(s)	469
MluNI	TGGCCA	1 cut(s)	469
MlyI	GAGTC	3 cut(s)	209, 1750, 2299
MmeI	TCCRAC	3 cut(s)	598, 1499, 2071
Mox20I	TGGCCA	1 cut(s)	469
MscI	TGGCCA	1 cut(s)	469
MseI	TTAA	6 cut(s)	948, 1242, 1350, 1560, 1755, 1863
MslI	CAYNNNNRTG	6 cut(s)	246, 384, 517, 861, 962, 1679
Msp20I	TGGCCA	1 cut(s)	469
MspA1I	CMGCKG	3 cut(s)	689, 977, 1121
MspCI	CTTAAG	1 cut(s)	1559
MspI	CCGG	2 cut(s)	708, 2099
MspR9I	CCNGG	6 cut(s)	18, 709, 1581, 1887, 2100, 2210
MunI	CAATTG	2 cut(s)	927, 1484
Mva1269I	GAATGC	1 cut(s)	839
MvaI	CCWGG	4 cut(s)	18, 1581, 1887, 2210
MvnI	CGCG	2 cut(s)	649, 651
MwoI	GCNNNNNNNGC	6 cut(s)	290, 770, 1169, 1178, 1310, 1710
NciI	CCSGG	2 cut(s)	709, 2100
NdeI	CATATG	1 cut(s)	91
NdeII	GATC	9 cut(s)	182, 353, 752, 932, 1029, 1228, 1251, 1372, 1882
NlaIV	GGNNCC	7 cut(s)	622, 1417, 1533, 1803, 1884, 1980, 2059
NmuCI	GTSAC	2 cut(s)	703, 2068
NsbI	TGCGCA	1 cut(s)	1936
NspI	RCATGY	2 cut(s)	1382, 1862
PciI	ACATGT	2 cut(s)	1378, 1858
PctI	GAATGC	1 cut(s)	839
PfeI	GAWTC	6 cut(s)	163, 473, 508, 528, 548, 1330
PflMI	CCANNNNNTGG	2 cut(s)	17, 803
PfoI	TCCNGGA	1 cut(s)	2208
PleI	GAGTC	3 cut(s)	209, 1749, 2298
PpsI	GAGTC	3 cut(s)	209, 1749, 2298
Ppu21I	YACGTR	1 cut(s)	2245
PpuMI	RGGWCCY	1 cut(s)	1532
PscI	ACATGT	2 cut(s)	1378, 1858
PsiI	TTATAA	2 cut(s)	1157, 2109
Psp124BI	GAGCTC	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	1532
Psp6I	CCWGG	4 cut(s)	16, 1579, 1885, 2208
PspFI	CCCAGC	1 cut(s)	977
PspGI	CCWGG	4 cut(s)	16, 1579, 1885, 2208
PspN4I	GGNNCC	7 cut(s)	622, 1417, 1533, 1803, 1884, 1980, 2059
PspPI	GGNCC	6 cut(s)	503, 620, 989, 1532, 1619, 2206
PspPPI	RGGWCCY	1 cut(s)	1532
PsrI	GAACNNNNNNTAC	2 cut(s)	1290, 1322
PstI	CTGCAG	3 cut(s)	613, 1168, 1750
PstNI	CAGNNNCTG	1 cut(s)	551
PsuI	RGATCY	3 cut(s)	932, 1251, 1882
PvuII	CAGCTG	2 cut(s)	977, 1121
RsaI	GTAC	5 cut(s)	57, 101, 1048, 1492, 1898
RsaNI	GTAC	5 cut(s)	56, 100, 1047, 1491, 1897
RseI	CAYNNNNRTG	6 cut(s)	246, 384, 517, 861, 962, 1679
SacI	GAGCTC	1 cut(s)	112
SaqAI	TTAA	6 cut(s)	948, 1242, 1350, 1560, 1755, 1863
Sau3AI	GATC	9 cut(s)	182, 353, 752, 932, 1029, 1228, 1251, 1372, 1882
Sau96I	GGNCC	6 cut(s)	503, 620, 989, 1532, 1619, 2206
ScaI	AGTACT	2 cut(s)	57, 1048
SchI	GAGTC	3 cut(s)	209, 1750, 2299
ScrFI	CCNGG	6 cut(s)	18, 709, 1581, 1887, 2100, 2210
SduI	GDGCHC	3 cut(s)	112, 1812, 1983
SfaNI	GCATC	6 cut(s)	268, 307, 886, 988, 1159, 2127
SfcI	CTRYAG	3 cut(s)	609, 1164, 1746
SinI	GGWCC	5 cut(s)	503, 620, 989, 1532, 2206
SmiMI	CAYNNNNRTG	6 cut(s)	246, 384, 517, 861, 962, 1679
SmlI	CTYRAG	3 cut(s)	235, 374, 1559
SmoI	CTYRAG	3 cut(s)	235, 374, 1559
SnaBI	TACGTA	1 cut(s)	2245
SsiI	CCGC	6 cut(s)	647, 689, 1019, 1178, 1514, 2309
SspMI	CTAG	7 cut(s)	53, 351, 765, 1044, 1455, 1536, 2314
SstI	GAGCTC	1 cut(s)	112
StyD4I	CCNGG	6 cut(s)	16, 707, 1579, 1885, 2098, 2208
StyI	CCWWGG	1 cut(s)	1101
TaaI	ACNGT	5 cut(s)	170, 1006, 1036, 1343, 2041
TaiI	ACGT	2 cut(s)	1474, 2247
TaqI	TCGA	3 cut(s)	843, 1267, 1962
TaqII	GACCGA	1 cut(s)	520
TatI	WGTACW	3 cut(s)	55, 99, 1046
TauI	GCSGC	3 cut(s)	1181, 1517, 2312
TfiI	GAWTC	6 cut(s)	163, 473, 508, 528, 548, 1330
Tru1I	TTAA	6 cut(s)	948, 1242, 1350, 1560, 1755, 1863
Tru9I	TTAA	6 cut(s)	948, 1242, 1350, 1560, 1755, 1863
TseFI	GTSAC	2 cut(s)	703, 2068
Tsp45I	GTSAC	2 cut(s)	703, 2068
TspDTI	ATGAA	7 cut(s)	216, 507, 929, 1374, 1498, 1512, 1965
Van91I	CCANNNNNTGG	2 cut(s)	17, 803
Vha464I	CTTAAG	1 cut(s)	1559
VpaK11BI	GGWCC	5 cut(s)	503, 620, 989, 1532, 2206
XapI	RAATTY	5 cut(s)	400, 554, 982, 1650, 1924
XceI	RCATGY	2 cut(s)	1382, 1862
XcmI	CCANNNNNNNNNTGG	1 cut(s)	405
XspI	CTAG	7 cut(s)	53, 351, 765, 1044, 1455, 1536, 2314
ZrmI	AGTACT	2 cut(s)	57, 1048

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.