Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0008433

Physical Location & Seq

Genomic Coordinates Reverse (-)

5498426 .. 5501532

Gene Structure 3107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g07550.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGTATCCGATACCACCATTGTCACTTGGGGCTCTGGGGAAGACGGCCAATTAGGAATCGGGAATAACGAGGAGAAGGAATGGGTGTGCGCCGTCAAAGCCCTCGAGTCGCAGACTGTCCGCTCTGTTGTCGCTGGCAGCCGAAACTCCCTCGCCATTTGCGATGATGGCAAGTTGTTTACATGGGGTTGGAACCAGAGAGGAACCCTGGGGCATCCTCCTGAGACCAAAACTGAGAACATTCCAAGCCAGGTTAAAGCTCTGGCCAATGTCAAAATTGTTCAGGCTGCTATTGGTGGATGGCATTGTTTGGCTGTTGATGATCAAGGCCGCGCTTACGCCTGGGGTGGAAACGAGTATGGACAGTGTGGTGAGGAACCAGAGCGGAAGGATGACACTGGTAGACCTTTGAGAAGGGATATAGTGATTCCTCAACGCTGTGCACCGAAACTTAAAGTTCGCCAGGTAGCTGCTGGTGGTACTCACTCTGTGGTACTTACACGCGACGGGCAAGTCTGGACGTGGGGTCAGCCATGGCCTCCGGGAGACATAAAACAAATTTCAACACCTGTGCGAGTACAAGGTCTTGATGCAGTGAGGCTCATTGCAGTAGGGGCATTTCATAATTTGGCTCTGCAAGAGGATGGTGCCTTATGGGCTTGGGGTAACAACGAATATGGACAACTTGGAACAGAGGATACTCAGCCGAGATCACAACCTATTCCTGTCCAAGGACTTTCTGGTCTTACTTTGGTGGATATTGCTGCTGGAGGATGGCATTCTACTGCACTAACAGAAGATGGAGAGGTGTATGGTTGGGGACGAGGAGAACATGGGAGGCTTGGGTTTGGCGATAATGATAAGAGCAGCAAAATGGTGCCGCAAAGGGTTAATCTTTTAGCTGGGGAGGATATTGTTCAGGTGTCTTGTGGAGGCACTCACTCTGTTGCACTAACTCGTGACGGGCGAATGTTTTCGTTTGGCCGAGGCGACCATGGACGCCTTGGATATGGAAGGAAGGTGACGACTGGTCAGCCGATGGAAGTTCCCATCGGCATCCCTCCCAGACATGGCACTGCGGACAATGGAAATTGGATTGCCAAACTCGTTGCTTGCGGAGGACGCCATACGTTGGCAATCGTAGAATGGAAAGCTGATGATGAATCAGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1

Protein Analysis

392

Amino Acids

42.1

Weight (kDa)

5.84

Isoelectric Point (pI)

27.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02510 AT3G02510 AT3G02510 AT5G16040 AT5G16040
fragaria_vesca	FvH4_6g45310
malus_domestica	MD07G1096100.v1.1 MD09G1085900.v1.1 MD17G1074800.v1.1
prunus_persica	Prupe.3G239200_v2.0.a1 Prupe.3G239200_v2.0.a1
pyrus_communis	pycom09g01100 pycom17g07550
rosa_chinensis	RchiOBHm_Chr2g0163071
rosa_laevigata	RLG00000021369
rosa_multiflora	Rmu_sc0003555.1_g000021 Rmu_sc0003984.1_g000005
rosa_roxburghii	Rroxscaffold_2G00087570
rosa_rugosa	Rorug02G0500100
rosa_samantha	Rh2AG566500 Rh2BG578900 Rh2DG589200
rosa_wichuraiana	Rw2G046900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	512, 741
AccB1I	GGYRCC	2 cut(s)	647, 877
AccB7I	CCANNNNNTGG	1 cut(s)	1132
AccBSI	CCGCTC	2 cut(s)	123, 385
AccI	GTMKAC	1 cut(s)	403
AccII	CGCG	2 cut(s)	333, 504
AciI	CCGC	6 cut(s)	121, 331, 385, 881, 1079, 1116
AcoI	YGGCCR	3 cut(s)	46, 264, 982
AcsI	RAATTY	1 cut(s)	558
AcyI	GRCGYC	2 cut(s)	1000, 1123
AdeI	CACNNNGTG	1 cut(s)	490
AfaI	GTAC	3 cut(s)	481, 495, 579
AfiI	CCNNNNNNNGG	3 cut(s)	731, 1070, 1132
AgsI	TTSAA	1 cut(s)	564
AhdI	GACNNNNNGTC	2 cut(s)	525, 1029
AjiI	CACGTC	1 cut(s)	522
AjnI	CCWGG	4 cut(s)	207, 249, 341, 462
AluBI	AGCT	4 cut(s)	260, 470, 902, 1154
AluI	AGCT	4 cut(s)	260, 470, 902, 1154
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	218, 540
Alw44I	GTGCAC	1 cut(s)	441
Ama87I	CYCGRG	1 cut(s)	104
AoxI	GGCC	5 cut(s)	46, 264, 328, 536, 982
ApaLI	GTGCAC	1 cut(s)	441
ApeKI	GCWGC	5 cut(s)	138, 287, 470, 764, 867
ApoI	RAATTY	1 cut(s)	558
Asp700I	GAANNNNTTC	1 cut(s)	973
AspLEI	GCGC	2 cut(s)	92, 335
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	2 cut(s)	383, 1033
AvaI	CYCGRG	1 cut(s)	104
BaeGI	GKGCMC	1 cut(s)	445
BalI	TGGCCA	1 cut(s)	266
BanI	GGYRCC	2 cut(s)	647, 877
BanII	GRGCYC	1 cut(s)	35
BauI	CACGAG	1 cut(s)	957
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	5 cut(s)	150, 274, 457, 751, 879
BccI	CCATC	7 cut(s)	161, 294, 638, 768, 794, 1033, 1058
BceAI	ACGGC	2 cut(s)	61, 77
BciT130I	CCWGG	4 cut(s)	209, 251, 343, 464
BciVI	GTATCC	2 cut(s)	16, 691
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	2 cut(s)	218, 540
BfuI	GTATCC	2 cut(s)	16, 691
BglI	GCCNNNNNGGC	1 cut(s)	656
BisI	GCNGC	7 cut(s)	139, 288, 331, 471, 765, 868, 881
BlsI	GCNGC	7 cut(s)	140, 289, 332, 472, 766, 869, 882
Bme1390I	CCNGG	5 cut(s)	209, 251, 343, 464, 543
BmeRI	GACNNNNNGTC	2 cut(s)	525, 1029
BmeT110I	CYCGRG	1 cut(s)	104
BmgBI	CACGTC	1 cut(s)	522
BmiI	GGNNCC	5 cut(s)	194, 205, 378, 649, 879
BmrFI	CCNGG	5 cut(s)	209, 251, 343, 464, 543
BmsI	GCATC	3 cut(s)	223, 580, 1065
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	789
BpuMI	CCSGG	1 cut(s)	543
BsaHI	GRCGYC	2 cut(s)	1000, 1123
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	8 cut(s)	207, 208, 342, 533, 730, 985, 994, 1003
Bsc4I	CCNNNNNNNGG	3 cut(s)	731, 1070, 1132
Bse1I	ACTGG	2 cut(s)	403, 1033
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	4 cut(s)	209, 251, 343, 464
BseDI	CCNNGG	8 cut(s)	207, 208, 342, 533, 730, 985, 994, 1003
BseGI	GGATG	6 cut(s)	214, 305, 397, 649, 779, 1056
BseLI	CCNNNNNNNGG	3 cut(s)	731, 1070, 1132
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	3 cut(s)	213, 225, 716
BseNI	ACTGG	2 cut(s)	403, 1033
BseRI	GAGGAG	2 cut(s)	86, 840
BseSI	GKGCMC	1 cut(s)	445
BseXI	GCAGC	5 cut(s)	150, 274, 457, 751, 879
BseYI	CCCAGC	1 cut(s)	902
BsgI	GTGCAG	1 cut(s)	771
Bsh1236I	CGCG	2 cut(s)	333, 504
BshFI	GGCC	5 cut(s)	48, 266, 330, 538, 984
BshNI	GGYRCC	2 cut(s)	647, 877
BsiHKAI	GWGCWC	1 cut(s)	445
BsiHKCI	CYCGRG	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	542
BslFI	GGGAC	1 cut(s)	834
BslI	CCNNNNNNNGG	3 cut(s)	731, 1070, 1132
BsmAI	GTCTC	2 cut(s)	218, 540
BsmFI	GGGAC	1 cut(s)	834
BsmI	GAATGC	1 cut(s)	778
BsnI	GGCC	5 cut(s)	48, 266, 330, 538, 984
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	104
Bsp1286I	GDGCHC	2 cut(s)	35, 445
Bsp143I	GATC	2 cut(s)	322, 710
Bsp19I	CCATGG	2 cut(s)	533, 994
BspACI	CCGC	6 cut(s)	121, 331, 385, 881, 1079, 1116
BspANI	GGCC	5 cut(s)	48, 266, 330, 538, 984
BspCNI	CTCAG	3 cut(s)	214, 226, 715
BspFNI	CGCG	2 cut(s)	333, 504
BspLI	GGNNCC	5 cut(s)	194, 205, 378, 649, 879
BspT107I	GGYRCC	2 cut(s)	647, 877
BspTNI	GGTCTC	1 cut(s)	218
BsrBI	CCGCTC	2 cut(s)	123, 385
BsrDI	GCAATG	1 cut(s)	603
BsrI	ACTGG	2 cut(s)	403, 1033
BssECI	CCNNGG	8 cut(s)	207, 208, 342, 533, 730, 985, 994, 1003
BssMI	GATC	2 cut(s)	322, 710
BssNI	GRCGYC	2 cut(s)	1000, 1123
BssSI	CACGAG	1 cut(s)	957
BssT1I	CCWWGG	4 cut(s)	533, 730, 994, 1003
Bst2BI	CACGAG	1 cut(s)	957
Bst2UI	CCWGG	4 cut(s)	209, 251, 343, 464
Bst4CI	ACNGT	2 cut(s)	118, 366
BstACI	GRCGYC	2 cut(s)	1000, 1123
BstC8I	GCNNGC	2 cut(s)	136, 1114
BstDEI	CTNAG	3 cut(s)	222, 234, 702
BstDSI	CCRYGG	2 cut(s)	533, 994
BstENI	CCTNNNNNAGG	1 cut(s)	729
BstF5I	GGATG	6 cut(s)	214, 305, 397, 649, 779, 1056
BstFNI	CGCG	2 cut(s)	333, 504
BstHHI	GCGC	2 cut(s)	92, 335
BstKTI	GATC	2 cut(s)	325, 713
BstMAI	GTCTC	2 cut(s)	218, 540
BstMBI	GATC	2 cut(s)	322, 710
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 168, 614, 656, 1122
BstNI	CCWGG	4 cut(s)	209, 251, 343, 464
BstSCI	CCNGG	5 cut(s)	207, 249, 341, 462, 541
BstSLI	GKGCMC	1 cut(s)	445
BstUI	CGCG	2 cut(s)	333, 504
BstV1I	GCAGC	5 cut(s)	150, 274, 457, 751, 879
BstV2I	GAAGAC	1 cut(s)	48
BsuI	GTATCC	2 cut(s)	16, 691
BsuRI	GGCC	5 cut(s)	48, 266, 330, 538, 984
BtgI	CCRYGG	2 cut(s)	533, 994
BtgZI	GCGATG	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	522
BtsCI	GGATG	6 cut(s)	214, 305, 397, 649, 779, 1056
BtsI	GCAGTG	2 cut(s)	600, 1074
BtsIMutI	CAGTG	4 cut(s)	371, 396, 600, 1074
Cac8I	GCNNGC	2 cut(s)	136, 1114
CfoI	GCGC	2 cut(s)	92, 335
CseI	GACGC	2 cut(s)	1008, 1131
Csp6I	GTAC	3 cut(s)	480, 494, 578
CviAII	CATG	5 cut(s)	183, 534, 833, 995, 1070
CviQI	GTAC	3 cut(s)	480, 494, 578
DdeI	CTNAG	3 cut(s)	222, 234, 702
DpnI	GATC	2 cut(s)	324, 712
DpnII	GATC	2 cut(s)	322, 710
DraIII	CACNNNGTG	1 cut(s)	490
DrdI	GACNNNNNNGTC	2 cut(s)	512, 741
DriI	GACNNNNNGTC	2 cut(s)	525, 1029
DseDI	GACNNNNNNGTC	2 cut(s)	512, 741
EaeI	YGGCCR	3 cut(s)	46, 264, 982
Eam1105I	GACNNNNNGTC	2 cut(s)	525, 1029
Eco130I	CCWWGG	4 cut(s)	533, 730, 994, 1003
Eco24I	GRGCYC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	104
EcoNI	CCTNNNNNAGG	1 cut(s)	729
EcoRII	CCWGG	4 cut(s)	207, 249, 341, 462
EcoT14I	CCWWGG	4 cut(s)	533, 730, 994, 1003
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	4 cut(s)	533, 730, 994, 1003
FaeI	CATG	5 cut(s)	186, 537, 836, 998, 1073
FaqI	GGGAC	1 cut(s)	834
FatI	CATG	5 cut(s)	182, 533, 832, 994, 1069
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	7 cut(s)	139, 288, 331, 471, 765, 868, 881
FokI	GGATG	6 cut(s)	201, 312, 404, 656, 786, 1043
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	7 cut(s)	139, 288, 331, 471, 765, 868, 881
GlaI	GCGC	2 cut(s)	91, 334
GluI	GCNGC	7 cut(s)	139, 288, 331, 471, 765, 868, 881
GsaI	CCCAGC	1 cut(s)	906
GsuI	CTGGAG	1 cut(s)	789
HaeIII	GGCC	5 cut(s)	48, 266, 330, 538, 984
HapII	CCGG	1 cut(s)	542
HgaI	GACGC	2 cut(s)	1008, 1131
HhaI	GCGC	2 cut(s)	92, 335
Hin1I	GRCGYC	2 cut(s)	1000, 1123
Hin1II	CATG	5 cut(s)	186, 537, 836, 998, 1073
Hin6I	GCGC	2 cut(s)	90, 333
HinP1I	GCGC	2 cut(s)	90, 333
HinfI	GANTC	5 cut(s)	57, 107, 427, 1163, 1169
HpaII	CCGG	1 cut(s)	542
HphI	GGTGA	2 cut(s)	383, 1033
Hpy166II	GTNNAC	3 cut(s)	180, 404, 443
Hpy188I	TCNGA	2 cut(s)	10, 1168
Hpy188III	TCNNGA	5 cut(s)	61, 221, 517, 587, 959
Hpy8I	GTNNAC	3 cut(s)	180, 404, 443
Hpy99I	CGWCG	1 cut(s)	509
HpyAV	CCTTC	5 cut(s)	70, 382, 408, 1008, 1012
HpyCH4III	ACNGT	2 cut(s)	118, 366
HpyCH4IV	ACGT	2 cut(s)	521, 1130
HpyCH4V	TGCA	6 cut(s)	443, 593, 608, 637, 788, 950
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 168, 614, 656, 1122
HpyF3I	CTNAG	3 cut(s)	222, 234, 702
HpySE526I	ACGT	2 cut(s)	521, 1130
Hsp92I	GRCGYC	2 cut(s)	1000, 1123
Hsp92II	CATG	5 cut(s)	186, 537, 836, 998, 1073
HspAI	GCGC	2 cut(s)	90, 333
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	322, 710
Lsp1109I	GCAGC	5 cut(s)	150, 274, 457, 751, 879
LweI	GCATC	3 cut(s)	223, 580, 1065
MaeII	ACGT	2 cut(s)	521, 1130
MaeIII	GTNAC	4 cut(s)	22, 665, 959, 1021
MalI	GATC	2 cut(s)	324, 712
MbiI	CCGCTC	2 cut(s)	123, 385
MboI	GATC	2 cut(s)	322, 710
MboII	GAAGA	2 cut(s)	53, 809
MhlI	GDGCHC	2 cut(s)	35, 445
MlsI	TGGCCA	1 cut(s)	266
MluCI	AATT	5 cut(s)	50, 276, 558, 625, 1090
MluNI	TGGCCA	1 cut(s)	266
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	170
Mox20I	TGGCCA	1 cut(s)	266
MroXI	GAANNNNTTC	1 cut(s)	973
MscI	TGGCCA	1 cut(s)	266
MseI	TTAA	3 cut(s)	255, 453, 891
Msp20I	TGGCCA	1 cut(s)	266
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	5 cut(s)	209, 251, 343, 464, 543
Mva1269I	GAATGC	1 cut(s)	778
MvaI	CCWGG	4 cut(s)	209, 251, 343, 464
MvnI	CGCG	2 cut(s)	333, 504
MwoI	GCNNNNNNNGC	5 cut(s)	98, 168, 614, 656, 1122
NciI	CCSGG	1 cut(s)	543
NcoI	CCATGG	2 cut(s)	533, 994
NdeII	GATC	2 cut(s)	322, 710
NlaIII	CATG	5 cut(s)	186, 537, 836, 998, 1073
NlaIV	GGNNCC	5 cut(s)	194, 205, 378, 649, 879
NmeAIII	GCCGAG	2 cut(s)	732, 1010
NmuCI	GTSAC	3 cut(s)	22, 959, 1021
PaeR7I	CTCGAG	1 cut(s)	104
PasI	CCCWGGG	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	3 cut(s)	66, 159, 964
PctI	GAATGC	1 cut(s)	778
PdmI	GAANNNNTTC	1 cut(s)	973
PfeI	GAWTC	4 cut(s)	57, 427, 1163, 1169
PflMI	CCANNNNNTGG	1 cut(s)	1132
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	7 cut(s)	140, 289, 332, 472, 766, 869, 882
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
Psp6I	CCWGG	4 cut(s)	207, 249, 341, 462
PspFI	CCCAGC	1 cut(s)	902
PspGI	CCWGG	4 cut(s)	207, 249, 341, 462
PspN4I	GGNNCC	5 cut(s)	194, 205, 378, 649, 879
PspXI	VCTCGAGB	1 cut(s)	104
PsrI	GAACNNNNNNTAC	2 cut(s)	682, 714
RsaI	GTAC	3 cut(s)	481, 495, 579
RsaNI	GTAC	3 cut(s)	480, 494, 578
SaqAI	TTAA	3 cut(s)	255, 453, 891
SatI	GCNGC	7 cut(s)	139, 288, 331, 471, 765, 868, 881
Sau3AI	GATC	2 cut(s)	322, 710
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	5 cut(s)	209, 251, 343, 464, 543
SduI	GDGCHC	2 cut(s)	35, 445
SfaNI	GCATC	3 cut(s)	223, 580, 1065
Sfr274I	CTCGAG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	5 cut(s)	50, 276, 558, 625, 1090
SsiI	CCGC	6 cut(s)	121, 331, 385, 881, 1079, 1116
StyD4I	CCNGG	5 cut(s)	207, 249, 341, 462, 541
StyI	CCWWGG	4 cut(s)	533, 730, 994, 1003
TaaI	ACNGT	2 cut(s)	118, 366
TaiI	ACGT	2 cut(s)	524, 1133
TaqI	TCGA	1 cut(s)	105
TasI	AATT	5 cut(s)	50, 276, 558, 625, 1090
TatI	WGTACW	1 cut(s)	577
TauI	GCSGC	2 cut(s)	333, 883
TfiI	GAWTC	4 cut(s)	57, 427, 1163, 1169
Tru1I	TTAA	3 cut(s)	255, 453, 891
Tru9I	TTAA	3 cut(s)	255, 453, 891
TscAI	CASTG	4 cut(s)	371, 403, 600, 1081
TseFI	GTSAC	3 cut(s)	22, 959, 1021
TseI	GCWGC	5 cut(s)	138, 287, 470, 764, 867
Tsp45I	GTSAC	3 cut(s)	22, 959, 1021
TspDTI	ATGAA	2 cut(s)	611, 1176
TspRI	CASTG	4 cut(s)	371, 403, 600, 1081
Van91I	CCANNNNNTGG	1 cut(s)	1132
VneI	GTGCAC	1 cut(s)	441
XagI	CCTNNNNNAGG	1 cut(s)	729
XapI	RAATTY	1 cut(s)	558
XcmI	CCANNNNNNNNNTGG	3 cut(s)	470, 737, 1001
XhoI	CTCGAG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.