AT3G02510

regulator of chromosome condensation (RCC1) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0008433
Physical Location & Seq
Reverse (-)
521746 .. 524675
2930 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G02510.1

Sequence Viewer

Length: 1182 bp
ATGGTTACAGCTACTTCAATCATAGCCTGGGGCTCTGGAGAAGATGGGCAACTAGGAATTGGTACCAACGAAGAAAAGGAATGGGCTTGCGTCGTTGAAGCTCTCGAGCCTTACTCTGTTCGCTCCGTTGTCTCTGGTAGCCGTAACTCCCTCGCCATTTGCGATGATGGCACGATGTTTACATGGGGTTGGAATCAAAGAGGTACATTAGGACACCAACCAGAAACAAAAACAGAGAACATCCCTAGTCGAGTCAAGGCCCTTGCCAATGTCAAGATCACTCAGGCAGCAATTGGTGGTTGGCATTGTTTAGCTGTTGATGATCAAGGCCGAGCATATGCGTGGGGTGGGAATGAATATGGACAATGTGGTGAAGAGCCTTTAAAAGACGAGATGGGTAGGCCCGTACGAAGAGATATTGTGATCCCTAAGCGTTGTGCCCCCAAACTTACAGTCAGACAGGTAGCTGCAGGTGGTACTCACTCGGTGGTTCTTACACGCGAAGGTCATGTGTGGACTTGGGGTCAACCGTGGCCTCCCGGTGACATAAAACAAATATCTGTTCCTGTAAGAGTTCAAGGTCTTGAAAATGTCCGTCTTATTGCTGTTGGAGCATTTCATAATCTGGCTCTTGAAGAAGATGGGAGATTATTGGCATGGGGTAATAACGAATACGGACAACTTGGAACCGGTGACACCCAGCCAACATCTCATCCTGTTCCAGTCCAAGGCCTCGATGATCTCACTTTGGTCGATATTGCTGCGGGTGGATGGCATTCAACGGCTCTAACTGATAAAGGAGAGGTGTATGGTTGGGGAAGAGGAGAACATGGAAGACTCGGGCTTGGTGACAATGACAAGAGCAGCAAAATGGTTCCACAGAAAGTTAATCTTCTAGCTGAAGAAGATATAATTCAGGTTTCTTGTGGCGGAACACATTCAGTTGCTTTGACAAGAGATGGCAGAATCTTCTCGTTTGGTAGAGGAGATCATGGTAGACTTGGTTATGGAAGGAAAGTAACAACAGGACAGCCATTGGAGTTGCCTATAAAGATTCCTCCGCCTGAAGGAAGCTTTAATCACACAGACGAAGAAGAAGAAGGAAAATGGTCAGCTAAATCGATTGCTTGCGGTGGCCGCCACACTCTTGCCATTGTAGAATGGAAGTCCGATGATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

393

Amino Acids

42.5

Weight (kDa)

5.59

Isoelectric Point (pI)

30.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_RLD PF25390 7 - 384 1e-89 RCC1-like domain
RCC1_2 PF13540 40 - 68 4.5e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 56 - 106 1.4e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 93 - 122 2.6e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 109 - 165 2.6e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 152 - 176 9.3e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 198 - 227 6.1e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 214 - 263 5.9e-16 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 216 - 289 8.2e-06 Alsin RCC1-like domain
RCC1_2 PF13540 251 - 278 4.7e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 266 - 317 2.6e-17 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 304 - 332 1.3e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 320 - 385 1.5e-09 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 461
Acc36I ACCTGC 1 cut(s) 461
Acc65I GGTACC 1 cut(s) 62
AccB1I GGYRCC 1 cut(s) 62
AccI GTMKAC 1 cut(s) 997
AccII CGCG 1 cut(s) 501
AciI CCGC 5 cut(s) 764, 930, 1061, 1131, 1138
AclWI GGATC 1 cut(s) 418
AcoI YGGCCR 1 cut(s) 1135
AcuI CTGAAG 2 cut(s) 921, 1086
AdeI CACNNNGTG 1 cut(s) 487
AfaI GTAC 4 cut(s) 64, 205, 408, 478
AfiI CCNNNNNNNGG 2 cut(s) 728, 1067
AgeI ACCGGT 1 cut(s) 689
AgsI TTSAA 6 cut(s) 18, 98, 578, 587, 635, 780
AhdI GACNNNNNGTC 1 cut(s) 522
AjnI CCWGG 1 cut(s) 26
AluBI AGCT 7 cut(s) 11, 101, 314, 467, 899, 1074, 1115
AluI AGCT 7 cut(s) 11, 101, 314, 467, 899, 1074, 1115
Alw26I GTCTC 1 cut(s) 136
AlwI GGATC 1 cut(s) 418
Ama87I CYCGRG 2 cut(s) 104, 839
AoxI GGCC 6 cut(s) 258, 328, 401, 533, 730, 1135
ApeKI GCWGC 4 cut(s) 287, 467, 761, 864
ArsI GACNNNNNNTTYG 2 cut(s) 438, 470
AsiGI ACCGGT 1 cut(s) 689
Asp700I GAANNNNTTC 1 cut(s) 937
Asp718I GGTACC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 259, 402
AsuC2I CCSGG 1 cut(s) 540
AsuHPI GGTGA 4 cut(s) 383, 554, 704, 860
AvaI CYCGRG 2 cut(s) 104, 839
BaeGI GKGCMC 1 cut(s) 442
BanI GGYRCC 1 cut(s) 62
BanII GRGCYC 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 841
BbvI GCAGC 4 cut(s) 299, 454, 748, 876
BccI CCATC 6 cut(s) 38, 161, 388, 635, 765, 953
BceAI ACGGC 2 cut(s) 126, 798
BcgI CGANNNNNNTGC 2 cut(s) 743, 777
BciT130I CCWGG 1 cut(s) 28
BclI TGATCA 1 cut(s) 322
BcnI CCSGG 1 cut(s) 540
BcoDI GTCTC 1 cut(s) 136
BfaI CTAG 3 cut(s) 53, 246, 896
BfmI CTRYAG 1 cut(s) 468
BfuAI ACCTGC 1 cut(s) 461
BisI GCNGC 5 cut(s) 288, 468, 762, 865, 1138
BlsI GCNGC 5 cut(s) 289, 469, 763, 866, 1139
Bme1390I CCNGG 2 cut(s) 28, 540
BmeRI GACNNNNNGTC 1 cut(s) 522
BmeT110I CYCGRG 2 cut(s) 104, 839
BmgT120I GGNCC 2 cut(s) 259, 402
BmiI GGNNCC 3 cut(s) 64, 688, 876
BmrFI CCNGG 2 cut(s) 28, 540
BpiI GAAGAC 1 cut(s) 841
BplI GAGNNNNNCTC 2 cut(s) 98, 130
BpmI CTGGAG 1 cut(s) 57
Bpu10I CCTNAGC 1 cut(s) 429
BpuMI CCSGG 1 cut(s) 540
Bsa29I ATCGAT 1 cut(s) 1121
BsaJI CCNNGG 3 cut(s) 27, 530, 727
BsaWI WCCGGW 1 cut(s) 689
Bsc4I CCNNNNNNNGG 2 cut(s) 728, 1067
Bse118I RCCGGY 1 cut(s) 689
Bse1I ACTGG 1 cut(s) 722
BseBI CCWGG 1 cut(s) 28
BseCI ATCGAT 1 cut(s) 1121
BseDI CCNNGG 3 cut(s) 27, 530, 727
BseGI GGATG 3 cut(s) 240, 712, 776
BseLI CCNNNNNNNGG 2 cut(s) 728, 1067
BseMII CTCAG 1 cut(s) 296
BseNI ACTGG 1 cut(s) 722
BseRI GAGGAG 2 cut(s) 837, 999
BseSI GKGCMC 1 cut(s) 442
BseXI GCAGC 4 cut(s) 299, 454, 748, 876
BseYI CCCAGC 1 cut(s) 699
Bsh1236I CGCG 1 cut(s) 501
BshFI GGCC 6 cut(s) 260, 330, 403, 535, 732, 1137
BshNI GGYRCC 1 cut(s) 62
BshTI ACCGGT 1 cut(s) 689
BshVI ATCGAT 1 cut(s) 1121
BsiHKCI CYCGRG 2 cut(s) 104, 839
BsiSI CCGG 2 cut(s) 540, 690
BsiWI CGTACG 1 cut(s) 406
BslI CCNNNNNNNGG 2 cut(s) 728, 1067
BsmAI GTCTC 1 cut(s) 136
BsmI GAATGC 1 cut(s) 775
BsnI GGCC 6 cut(s) 260, 330, 403, 535, 732, 1137
BsoBI CYCGRG 2 cut(s) 104, 839
Bsp1286I GDGCHC 2 cut(s) 35, 442
Bsp143I GATC 5 cut(s) 276, 322, 423, 739, 988
BspACI CCGC 5 cut(s) 764, 930, 1061, 1131, 1138
BspANI GGCC 6 cut(s) 260, 330, 403, 535, 732, 1137
BspCNI CTCAG 1 cut(s) 295
BspDI ATCGAT 1 cut(s) 1121
BspFNI CGCG 1 cut(s) 501
BspLI GGNNCC 3 cut(s) 64, 688, 876
BspMAI CTGCAG 1 cut(s) 472
BspMI ACCTGC 1 cut(s) 461
BspPI GGATC 1 cut(s) 418
BspQI GCTCTTC 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 62
BsrFI RCCGGY 1 cut(s) 689
BsrI ACTGG 1 cut(s) 722
BssAI RCCGGY 1 cut(s) 689
BssECI CCNNGG 3 cut(s) 27, 530, 727
BssMI GATC 5 cut(s) 276, 322, 423, 739, 988
BssT1I CCWWGG 1 cut(s) 727
Bst2UI CCWGG 1 cut(s) 28
Bst4CI ACNGT 2 cut(s) 454, 531
Bst6I CTCTTC 3 cut(s) 369, 406, 814
BstC8I GCNNGC 2 cut(s) 88, 1129
BstDEI CTNAG 2 cut(s) 282, 429
BstDSI CCRYGG 1 cut(s) 530
BstF5I GGATG 3 cut(s) 240, 712, 776
BstFNI CGCG 1 cut(s) 501
BstKTI GATC 5 cut(s) 279, 325, 426, 742, 991
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 5 cut(s) 276, 322, 423, 739, 988
BstMWI GCNNNNNNNGC 3 cut(s) 168, 611, 1137
BstNI CCWGG 1 cut(s) 28
BstSCI CCNGG 2 cut(s) 26, 538
BstSFI CTRYAG 1 cut(s) 468
BstSLI GKGCMC 1 cut(s) 442
BstUI CGCG 1 cut(s) 501
BstV1I GCAGC 4 cut(s) 299, 454, 748, 876
BstV2I GAAGAC 1 cut(s) 841
Bsu15I ATCGAT 1 cut(s) 1121
BsuRI GGCC 6 cut(s) 260, 330, 403, 535, 732, 1137
BsuTUI ATCGAT 1 cut(s) 1121
BtgI CCRYGG 1 cut(s) 530
BtgZI GCGATG 1 cut(s) 177
BtsCI GGATG 3 cut(s) 240, 712, 776
BveI ACCTGC 1 cut(s) 461
Cac8I GCNNGC 2 cut(s) 88, 1129
Cfr10I RCCGGY 1 cut(s) 689
Cfr13I GGNCC 2 cut(s) 259, 402
ClaI ATCGAT 1 cut(s) 1121
CseI GACGC 1 cut(s) 79
Csp6I GTAC 4 cut(s) 63, 204, 407, 477
CspAI ACCGGT 1 cut(s) 689
CviAII CATG 5 cut(s) 183, 509, 657, 830, 992
CviQI GTAC 4 cut(s) 63, 204, 407, 477
DdeI CTNAG 2 cut(s) 282, 429
DpnI GATC 5 cut(s) 278, 324, 425, 741, 990
DpnII GATC 5 cut(s) 276, 322, 423, 739, 988
DraI TTTAAA 1 cut(s) 384
DraIII CACNNNGTG 1 cut(s) 487
DriI GACNNNNNGTC 1 cut(s) 522
EaeI YGGCCR 1 cut(s) 1135
Eam1104I CTCTTC 3 cut(s) 369, 406, 814
Eam1105I GACNNNNNGTC 1 cut(s) 522
EarI CTCTTC 3 cut(s) 369, 406, 814
EciI GGCGGA 2 cut(s) 945, 1050
Eco130I CCWWGG 1 cut(s) 727
Eco147I AGGCCT 1 cut(s) 732
Eco24I GRGCYC 1 cut(s) 35
Eco57I CTGAAG 2 cut(s) 921, 1086
Eco88I CYCGRG 2 cut(s) 104, 839
EcoO109I RGGNCCY 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 727
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 727
FaeI CATG 5 cut(s) 186, 512, 660, 833, 995
FalI AAGNNNNNCTT 2 cut(s) 876, 908
FatI CATG 5 cut(s) 182, 508, 656, 829, 991
FauI CCCGC 1 cut(s) 757
FauNDI CATATG 1 cut(s) 337
FbaI TGATCA 1 cut(s) 322
FblI GTMKAC 1 cut(s) 997
Fnu4HI GCNGC 5 cut(s) 288, 468, 762, 865, 1138
FokI GGATG 3 cut(s) 227, 699, 783
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 5 cut(s) 288, 468, 762, 865, 1138
FspBI CTAG 3 cut(s) 53, 246, 896
GluI GCNGC 5 cut(s) 288, 468, 762, 865, 1138
GsaI CCCAGC 1 cut(s) 703
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 6 cut(s) 260, 330, 403, 535, 732, 1137
HapII CCGG 2 cut(s) 540, 690
HgaI GACGC 1 cut(s) 79
Hin1II CATG 5 cut(s) 186, 512, 660, 833, 995
HincII GTYRAC 1 cut(s) 527
HindII GTYRAC 1 cut(s) 527
HindIII AAGCTT 1 cut(s) 1072
HinfI GANTC 5 cut(s) 193, 252, 837, 966, 1054
HpaII CCGG 2 cut(s) 540, 690
HphI GGTGA 4 cut(s) 383, 554, 704, 860
Hpy166II GTNNAC 4 cut(s) 180, 516, 527, 998
Hpy188I TCNGA 2 cut(s) 458, 1171
Hpy188III TCNNGA 5 cut(s) 36, 104, 274, 584, 632
Hpy8I GTNNAC 4 cut(s) 180, 516, 527, 998
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 4 cut(s) 497, 1005, 1061, 1094
HpyCH4III ACNGT 2 cut(s) 454, 531
HpyCH4V TGCA 1 cut(s) 470
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 611, 1137
HpyF3I CTNAG 2 cut(s) 282, 429
Hsp92II CATG 5 cut(s) 186, 512, 660, 833, 995
KpnI GGTACC 1 cut(s) 66
Ksp22I TGATCA 1 cut(s) 322
Kzo9I GATC 5 cut(s) 276, 322, 423, 739, 988
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 128, 611
Lsp1109I GCAGC 4 cut(s) 299, 454, 748, 876
MaeI CTAG 3 cut(s) 53, 246, 896
MaeIII GTNAC 6 cut(s) 4, 143, 542, 692, 848, 1018
MalI GATC 5 cut(s) 278, 324, 425, 741, 990
MboI GATC 5 cut(s) 276, 322, 423, 739, 988
MfeI CAATTG 1 cut(s) 291
MhlI GDGCHC 2 cut(s) 35, 442
MluCI AATT 3 cut(s) 57, 291, 912
MlyI GAGTC 2 cut(s) 261, 831
MmeI TCCRAC 2 cut(s) 170, 589
MnlI CCTC 8 cut(s) 161, 194, 546, 743, 796, 815, 977, 1068
MroXI GAANNNNTTC 1 cut(s) 937
MseI TTAA 3 cut(s) 383, 888, 1077
MslI CAYNNNNRTG 1 cut(s) 340
MspI CCGG 2 cut(s) 540, 690
MspR9I CCNGG 2 cut(s) 28, 540
MunI CAATTG 1 cut(s) 291
Mva1269I GAATGC 1 cut(s) 775
MvaI CCWGG 1 cut(s) 28
MvnI CGCG 1 cut(s) 501
MwoI GCNNNNNNNGC 3 cut(s) 168, 611, 1137
NciI CCSGG 1 cut(s) 540
NdeI CATATG 1 cut(s) 337
NdeII GATC 5 cut(s) 276, 322, 423, 739, 988
NlaIII CATG 5 cut(s) 186, 512, 660, 833, 995
NlaIV GGNNCC 3 cut(s) 64, 688, 876
NmeAIII GCCGAG 1 cut(s) 356
NmuCI GTSAC 3 cut(s) 542, 692, 848
PaeR7I CTCGAG 1 cut(s) 104
PaqCI CACCTGC 1 cut(s) 461
PceI AGGCCT 1 cut(s) 732
PciSI GCTCTTC 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 159
PctI GAATGC 1 cut(s) 775
PdmI GAANNNNTTC 1 cut(s) 937
PfeI GAWTC 3 cut(s) 193, 966, 1054
Pfl23II CGTACG 1 cut(s) 406
PinAI ACCGGT 1 cut(s) 689
PkrI GCNGC 5 cut(s) 289, 469, 763, 866, 1139
PleI GAGTC 2 cut(s) 260, 831
PpsI GAGTC 2 cut(s) 260, 831
Psp6I CCWGG 1 cut(s) 26
PspFI CCCAGC 1 cut(s) 699
PspGI CCWGG 1 cut(s) 26
PspLI CGTACG 1 cut(s) 406
PspN4I GGNNCC 3 cut(s) 64, 688, 876
PspPI GGNCC 2 cut(s) 259, 402
PstI CTGCAG 1 cut(s) 472
RsaI GTAC 4 cut(s) 64, 205, 408, 478
RsaNI GTAC 4 cut(s) 63, 204, 407, 477
RseI CAYNNNNRTG 1 cut(s) 340
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 3 cut(s) 383, 888, 1077
SatI GCNGC 5 cut(s) 288, 468, 762, 865, 1138
Sau3AI GATC 5 cut(s) 276, 322, 423, 739, 988
Sau96I GGNCC 2 cut(s) 259, 402
SchI GAGTC 2 cut(s) 261, 831
ScrFI CCNGG 2 cut(s) 28, 540
SduI GDGCHC 2 cut(s) 35, 442
SfcI CTRYAG 1 cut(s) 468
Sfr274I CTCGAG 1 cut(s) 104
SlaI CTCGAG 1 cut(s) 104
SmiMI CAYNNNNRTG 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 3 cut(s) 57, 291, 912
SseBI AGGCCT 1 cut(s) 732
SsiI CCGC 5 cut(s) 764, 930, 1061, 1131, 1138
SspMI CTAG 3 cut(s) 53, 246, 896
StuI AGGCCT 1 cut(s) 732
StyD4I CCNGG 2 cut(s) 26, 538
StyI CCWWGG 1 cut(s) 727
TaaI ACNGT 2 cut(s) 454, 531
TaqI TCGA 5 cut(s) 105, 250, 735, 753, 1121
TasI AATT 3 cut(s) 57, 291, 912
TauI GCSGC 1 cut(s) 1140
TfiI GAWTC 3 cut(s) 193, 966, 1054
Tru1I TTAA 3 cut(s) 383, 888, 1077
Tru9I TTAA 3 cut(s) 383, 888, 1077
TseFI GTSAC 3 cut(s) 542, 692, 848
TseI GCWGC 4 cut(s) 287, 467, 761, 864
Tsp45I GTSAC 3 cut(s) 542, 692, 848
TspDTI ATGAA 2 cut(s) 369, 608
TspGWI ACGGA 3 cut(s) 115, 584, 690
XhoI CTCGAG 1 cut(s) 104
XmiI GTMKAC 1 cut(s) 997
XmnI GAANNNNTTC 1 cut(s) 937
XspI CTAG 3 cut(s) 53, 246, 896
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.