Rh2BG578900

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0008433
Physical Location & Seq
Forward (+)
79632716 .. 79637534
4819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG578900.1

Sequence Viewer

Length: 825 bp
ATGGTATCCGATACCGCCATTATCACCTGGGGTTCCGGAGAAGATGGCCAATTGGGAATCGGGAGCAACGTGGACAAGGACCTCGTGTGCGTTGTCACCGCCCTAGAGTCCCAGACTGTTCGCTCCGTTGTCGCCGGAAGCAGAAACTCTCTCGCCATTTGTGAAGATGGCAAGCTGTTTACATGGGGTTGGAATCAGAGAGGGACTTTGGGGCACCCTCCCGAGAGCAAAACTGAGAACGTTCCTAGTCAAGTTAAAGCTCTTGCCAATTTTAAAATCGTTCAGGCTGCTATTGGTGGATGGCATTGTTTGGCTGTTGATGATCAAGGCCATGCTTATGCCTGGGGTGGAAATGAGTATGGACAGTGTGGTGGAGAACCTGAGCGTGACACTGGTAAACCTTTGAAAAGGGACATAGTGATTCCTCAGCGCTGTGCTCCCAAACTTGTAGTTCGCCAGGTAGCTGCTGGGGGCACTCACTCTGTGGTGCTTACACGTGAAGGGCATGTATGGACATGGGGTCAACCATGGCCTCCAGGAGACATAAAACAAATTTCAACACCTGTACGAGTACAAGGTCTTGATGCGGTGAAGCTCATTGCAGTAGGGGCATTTCATAATTTGGCTCTCCAAGAGGATGGCACTTTATGGGCATGGGGTAACAACGAATACGGACAGCTTGGAACAGGGGATACGCAGCCAAGATCACAACCCATTCCTGTCCGCGGACTTTCCGGTCTTACTTTGGTTTGTATTGCAGTCTCCTATTGGTTTTCTTTCTTCTCTTTTAGTCGTTTATGCTTAGCAGGTAACACAACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

274

Amino Acids

29.42

Weight (kDa)

6.3

Isoelectric Point (pI)

22.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alsin_RLD PF25384 4 - 113 1.6e-10 Alsin RCC1-like domain
WD40_RLD PF25390 7 - 249 4.3e-58 RCC1-like domain
RCC1 PF00415 8 - 53 8.4e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 40 - 68 2.8e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 56 - 106 1.3e-15 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 93 - 122 8.4e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 109 - 164 2.3e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 151 - 175 5.9e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 197 - 226 1.5e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 213 - 261 1.3e-11 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 735
Acc36I ACCTGC 1 cut(s) 797
AccB1I GGYRCC 1 cut(s) 213
AccII CGCG 1 cut(s) 726
AccIII TCCGGA 1 cut(s) 35
AciI CCGC 5 cut(s) 15, 99, 587, 724, 726
AclI AACGTT 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 552
AcvI CACGTG 1 cut(s) 497
AdeI CACNNNGTG 1 cut(s) 484
AfaI GTAC 2 cut(s) 567, 573
AfeI AGCGCT 1 cut(s) 431
AfiI CCNNNNNNNGG 1 cut(s) 725
AflIII ACRYGT 1 cut(s) 494
AgsI TTSAA 2 cut(s) 406, 558
AhdI GACNNNNNGTC 1 cut(s) 519
AjnI CCWGG 4 cut(s) 26, 341, 456, 535
AluBI AGCT 5 cut(s) 175, 260, 464, 595, 679
AluI AGCT 5 cut(s) 175, 260, 464, 595, 679
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 2 cut(s) 534, 766
Ama87I CYCGRG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 35
Aor51HI AGCGCT 1 cut(s) 431
AoxI GGCC 3 cut(s) 46, 328, 530
ApeKI GCWGC 3 cut(s) 287, 464, 697
ApoI RAATTY 1 cut(s) 552
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 1 cut(s) 79
AsuHPI GGTGA 3 cut(s) 16, 88, 601
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 79
BaeGI GKGCMC 2 cut(s) 216, 476
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 1 cut(s) 213
BauI CACGAG 1 cut(s) 83
BbrPI CACGTG 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 439
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 3 cut(s) 274, 451, 709
BccI CCATC 4 cut(s) 38, 161, 294, 632
BciT130I CCWGG 4 cut(s) 28, 343, 458, 537
BciVI GTATCC 2 cut(s) 16, 685
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 534, 766
BfaI CTAG 2 cut(s) 104, 246
BfoI RGCGCY 1 cut(s) 433
BfuAI ACCTGC 1 cut(s) 797
BfuI GTATCC 2 cut(s) 16, 685
BisI GCNGC 3 cut(s) 288, 465, 698
BlpI GCTNAGC 1 cut(s) 802
BlsI GCNGC 3 cut(s) 289, 466, 699
Bme1390I CCNGG 4 cut(s) 28, 343, 458, 537
Bme18I GGWCC 1 cut(s) 79
BmeRI GACNNNNNGTC 1 cut(s) 519
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 2 cut(s) 34, 215
BmrFI CCNGG 4 cut(s) 28, 343, 458, 537
BmsI GCATC 1 cut(s) 574
BpmI CTGGAG 1 cut(s) 519
Bpu10I CCTNAGC 2 cut(s) 381, 426
Bpu1102I GCTNAGC 1 cut(s) 802
BsaAI YACGTR 1 cut(s) 497
BsaJI CCNNGG 4 cut(s) 27, 342, 527, 724
BsaWI WCCGGW 2 cut(s) 35, 734
Bsc4I CCNNNNNNNGG 1 cut(s) 725
Bse1I ACTGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 597
BseAI TCCGGA 1 cut(s) 35
BseBI CCWGG 4 cut(s) 28, 343, 458, 537
BseDI CCNNGG 4 cut(s) 27, 342, 527, 724
BseGI GGATG 2 cut(s) 305, 643
BseLI CCNNNNNNNGG 1 cut(s) 725
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 3 cut(s) 225, 372, 440
BseNI ACTGG 1 cut(s) 397
BseSI GKGCMC 2 cut(s) 216, 476
BseXI GCAGC 3 cut(s) 274, 451, 709
BseYI CCCAGC 1 cut(s) 467
Bsh1236I CGCG 1 cut(s) 726
BshFI GGCC 3 cut(s) 48, 330, 532
BshNI GGYRCC 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 439
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 3 cut(s) 36, 135, 735
BslFI GGGAC 3 cut(s) 94, 217, 425
BslI CCNNNNNNNGG 1 cut(s) 725
BsmAI GTCTC 2 cut(s) 534, 766
BsmFI GGGAC 3 cut(s) 94, 217, 425
BsnI GGCC 3 cut(s) 48, 330, 532
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 3 cut(s) 216, 439, 476
Bsp13I TCCGGA 1 cut(s) 35
Bsp143I GATC 2 cut(s) 322, 704
Bsp1720I GCTNAGC 1 cut(s) 802
Bsp19I CCATGG 1 cut(s) 527
BspACI CCGC 5 cut(s) 15, 99, 587, 724, 726
BspANI GGCC 3 cut(s) 48, 330, 532
BspCNI CTCAG 3 cut(s) 226, 373, 439
BspEI TCCGGA 1 cut(s) 35
BspFNI CGCG 1 cut(s) 726
BspLI GGNNCC 2 cut(s) 34, 215
BspMI ACCTGC 1 cut(s) 797
BspT107I GGYRCC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 597
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 4 cut(s) 27, 342, 527, 724
BssMI GATC 2 cut(s) 322, 704
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 527
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 4 cut(s) 28, 343, 458, 537
Bst4CI ACNGT 3 cut(s) 118, 366, 820
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 4 cut(s) 234, 381, 426, 802
BstDSI CCRYGG 2 cut(s) 527, 724
BstF5I GGATG 2 cut(s) 305, 643
BstFNI CGCG 1 cut(s) 726
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 2 cut(s) 325, 707
BstMAI GTCTC 2 cut(s) 534, 766
BstMBI GATC 2 cut(s) 322, 704
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstNI CCWGG 4 cut(s) 28, 343, 458, 537
BstNSI RCATGY 1 cut(s) 509
BstSCI CCNGG 4 cut(s) 26, 341, 456, 535
BstSLI GKGCMC 2 cut(s) 216, 476
BstUI CGCG 1 cut(s) 726
BstV1I GCAGC 3 cut(s) 274, 451, 709
BstXI CCANNNNNNTGG 1 cut(s) 638
BsuI GTATCC 2 cut(s) 16, 685
BsuRI GGCC 3 cut(s) 48, 330, 532
BtgI CCRYGG 2 cut(s) 527, 724
BtsCI GGATG 2 cut(s) 305, 643
BtsIMutI CAGTG 2 cut(s) 371, 390
BveI ACCTGC 1 cut(s) 797
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 1 cut(s) 432
Cfr13I GGNCC 1 cut(s) 79
Cfr42I CCGCGG 1 cut(s) 727
Csp6I GTAC 2 cut(s) 566, 572
CviAII CATG 6 cut(s) 183, 332, 506, 516, 528, 654
CviQI GTAC 2 cut(s) 566, 572
DdeI CTNAG 4 cut(s) 234, 381, 426, 802
DpnI GATC 2 cut(s) 324, 706
DpnII GATC 2 cut(s) 322, 704
DraI TTTAAA 1 cut(s) 274
DraIII CACNNNGTG 1 cut(s) 484
DrdI GACNNNNNNGTC 1 cut(s) 735
DriI GACNNNNNGTC 1 cut(s) 519
DseDI GACNNNNNNGTC 1 cut(s) 735
EaeI YGGCCR 1 cut(s) 46
Eam1105I GACNNNNNGTC 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 527
Eco47I GGWCC 1 cut(s) 79
Eco47III AGCGCT 1 cut(s) 431
Eco72I CACGTG 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 4 cut(s) 26, 341, 456, 535
EcoT14I CCWWGG 1 cut(s) 527
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 6 cut(s) 186, 335, 509, 519, 531, 657
FaqI GGGAC 3 cut(s) 94, 217, 425
FatI CATG 6 cut(s) 182, 331, 505, 515, 527, 653
FbaI TGATCA 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 288, 465, 698
FokI GGATG 2 cut(s) 312, 650
Fsp4HI GCNGC 3 cut(s) 288, 465, 698
FspBI CTAG 2 cut(s) 104, 246
GlaI GCGC 1 cut(s) 431
GluI GCNGC 3 cut(s) 288, 465, 698
GsaI CCCAGC 1 cut(s) 471
GsuI CTGGAG 1 cut(s) 519
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 3 cut(s) 48, 330, 532
HapII CCGG 3 cut(s) 36, 135, 735
HhaI GCGC 1 cut(s) 432
Hin1II CATG 6 cut(s) 186, 335, 509, 519, 531, 657
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HincII GTYRAC 1 cut(s) 524
HindII GTYRAC 1 cut(s) 524
HinfI GANTC 4 cut(s) 57, 107, 193, 421
HpaII CCGG 3 cut(s) 36, 135, 735
HphI GGTGA 3 cut(s) 16, 88, 601
Hpy166II GTNNAC 4 cut(s) 73, 180, 398, 524
Hpy188I TCNGA 2 cut(s) 10, 198
Hpy188III TCNNGA 4 cut(s) 36, 61, 221, 581
Hpy8I GTNNAC 4 cut(s) 73, 180, 398, 524
HpyAV CCTTC 1 cut(s) 494
HpyCH4III ACNGT 3 cut(s) 118, 366, 820
HpyCH4IV ACGT 3 cut(s) 69, 240, 496
HpyCH4V TGCA 2 cut(s) 602, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpyF3I CTNAG 4 cut(s) 234, 381, 426, 802
HpySE526I ACGT 3 cut(s) 69, 240, 496
Hsp92II CATG 6 cut(s) 186, 335, 509, 519, 531, 657
HspAI GCGC 1 cut(s) 430
Kpn2I TCCGGA 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 322
KspI CCGCGG 1 cut(s) 727
Kzo9I GATC 2 cut(s) 322, 704
LmnI GCTCC 3 cut(s) 63, 128, 442
Lsp1109I GCAGC 3 cut(s) 274, 451, 709
LweI GCATC 1 cut(s) 574
MaeI CTAG 2 cut(s) 104, 246
MaeII ACGT 3 cut(s) 69, 240, 496
MaeIII GTNAC 4 cut(s) 94, 386, 659, 809
MalI GATC 2 cut(s) 324, 706
MboI GATC 2 cut(s) 322, 704
MboII GAAGA 3 cut(s) 53, 176, 772
MfeI CAATTG 1 cut(s) 50
MhlI GDGCHC 3 cut(s) 216, 439, 476
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 4 cut(s) 50, 268, 552, 619
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 170
MnlI CCTC 6 cut(s) 92, 194, 228, 435, 543, 628
Mox20I TGGCCA 1 cut(s) 48
MroI TCCGGA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 48
MseI TTAA 2 cut(s) 255, 273
MslI CAYNNNNRTG 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 726
MspI CCGG 3 cut(s) 36, 135, 735
MspR9I CCNGG 4 cut(s) 28, 343, 458, 537
MunI CAATTG 1 cut(s) 50
MvaI CCWGG 4 cut(s) 28, 343, 458, 537
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 1 cut(s) 608
NcoI CCATGG 1 cut(s) 527
NdeII GATC 2 cut(s) 322, 704
NlaIII CATG 6 cut(s) 186, 335, 509, 519, 531, 657
NlaIV GGNNCC 2 cut(s) 34, 215
NmuCI GTSAC 2 cut(s) 94, 386
NspI RCATGY 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 3 cut(s) 57, 193, 421
PfoI TCCNGGA 1 cut(s) 535
PkrI GCNGC 3 cut(s) 289, 466, 699
PleI GAGTC 1 cut(s) 115
PmaCI CACGTG 1 cut(s) 497
PmlI CACGTG 1 cut(s) 497
PpsI GAGTC 1 cut(s) 115
Ppu21I YACGTR 1 cut(s) 497
PpuMI RGGWCCY 1 cut(s) 79
Psp1406I AACGTT 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 4 cut(s) 26, 341, 456, 535
PspCI CACGTG 1 cut(s) 497
PspFI CCCAGC 1 cut(s) 467
PspGI CCWGG 4 cut(s) 26, 341, 456, 535
PspN4I GGNNCC 2 cut(s) 34, 215
PspPI GGNCC 1 cut(s) 79
PspPPI RGGWCCY 1 cut(s) 79
PsrI GAACNNNNNNTAC 2 cut(s) 676, 708
RsaI GTAC 2 cut(s) 567, 573
RsaNI GTAC 2 cut(s) 566, 572
RseI CAYNNNNRTG 1 cut(s) 336
SacII CCGCGG 1 cut(s) 727
SaqAI TTAA 2 cut(s) 255, 273
SatI GCNGC 3 cut(s) 288, 465, 698
Sau3AI GATC 2 cut(s) 322, 704
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 4 cut(s) 28, 343, 458, 537
SduI GDGCHC 3 cut(s) 216, 439, 476
SfaNI GCATC 1 cut(s) 574
Sfr303I CCGCGG 1 cut(s) 727
SgrBI CCGCGG 1 cut(s) 727
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 336
Sse9I AATT 4 cut(s) 50, 268, 552, 619
SsiI CCGC 5 cut(s) 15, 99, 587, 724, 726
SspMI CTAG 2 cut(s) 104, 246
StyD4I CCNGG 4 cut(s) 26, 341, 456, 535
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 3 cut(s) 118, 366, 820
TaiI ACGT 3 cut(s) 72, 243, 499
TasI AATT 4 cut(s) 50, 268, 552, 619
TatI WGTACW 1 cut(s) 571
TfiI GAWTC 3 cut(s) 57, 193, 421
Tru1I TTAA 2 cut(s) 255, 273
Tru9I TTAA 2 cut(s) 255, 273
TscAI CASTG 2 cut(s) 371, 397
TseFI GTSAC 2 cut(s) 94, 386
TseI GCWGC 3 cut(s) 287, 464, 697
Tsp45I GTSAC 2 cut(s) 94, 386
TspDTI ATGAA 1 cut(s) 605
TspGWI ACGGA 2 cut(s) 115, 687
TspRI CASTG 2 cut(s) 371, 397
VpaK11BI GGWCC 1 cut(s) 79
XapI RAATTY 1 cut(s) 552
XceI RCATGY 1 cut(s) 509
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XspI CTAG 2 cut(s) 104, 246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.