Rh2DG589200

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0008433
Physical Location & Seq
Forward (+)
82222023 .. 82226866
4844 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG589200.1

Sequence Viewer

Length: 951 bp
ATGGTATCCGATACCGCCATTATCACCTGGGGTTCCGGAGAAGATGGCCAATTGGGAATCGGGAGCAACGAGGAGAAGGACCTTGTGTGCGTTGTCACCGCCCTAGAGTCCCAGACTGTTCGCTCCGTTGTCGCCGGTAGCAGAAACTCTCTCGCCATTTGTGAAGATGGCAAGCTGTTTACATGGGGTTGGAATCAGAGAGGGACTTTGGGGCACCCTCCCGAGAGCAAAACTGAGAACGTTCCTAGTCAAGTTAAAGCTCTTGCCAATTTTAAAATCGTTCAGGCTGCTATTGGTGGATGGCATTGTTTGGCTGTTGATGATCAAGGCCATGCTTATGCCTGGGGTGGAAATGAGTATGGACAGTGCGGTGGAGAACCTGAGCGTGACACTGGTAAACCTTTGAAAAGGGACATAGTGATTCCTCAGCGCTGTGCTCCCAAACTTGTAGTTCGCCAGGTAGCTGCTGGGGGCACTCACTCTGTGGTGCTTACACGTGAAGGGCATGTATGGACATGGGGTCAACCATGGCCTCCTGGAGACATAAAACAAATTTCAACACCTGTACGAGTACAAGGTCTTGATGCGGTGAAGCTCATTGCAGTAGGGGCATTTCATAATTTGGCTCTCCAAGAGGATGGCACTTTATGGGCATGGGGTAACAACGAATATGGACAGCTTGGAACAGGGGATACGCAGCCAAGATCACAACCCATTCCTGTCCGCGGACTTTCTAGTCTTACTTTGGTGGATATTGCTGCTGGAGGATGGCATTCTACCGCACTAACGGAGGATGGAGAGGTGTATGGATGGGGCCGAGGGGAACATGGTAGACTTGGTTTCGGCGATAATGATAAGAGCAGTAAAATGGTCCCGCAAAAGGTTCATCTTTTAGCTGGGGAGGATATCGTTCAGGTACCAATTATATTGTTTTCCTTGCAAATCCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

316

Amino Acids

33.9

Weight (kDa)

5.59

Isoelectric Point (pI)

28.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alsin_RLD PF25384 4 - 112 1.3e-09 Alsin RCC1-like domain
WD40_RLD PF25390 7 - 306 6.6e-75 RCC1-like domain
RCC1 PF00415 8 - 53 1.1e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 40 - 68 3.5e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 56 - 106 1.6e-15 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 93 - 122 1e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 109 - 164 2.9e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 151 - 175 7.1e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 197 - 226 1.8e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 213 - 262 1.2e-15 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 215 - 288 6.4e-07 Alsin RCC1-like domain
RCC1_2 PF13540 250 - 277 2.4e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 265 - 306 5.7e-10 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 735
Acc65I GGTACC 1 cut(s) 916
AccB1I GGYRCC 2 cut(s) 213, 916
AccI GTMKAC 1 cut(s) 832
AccII CGCG 1 cut(s) 726
AccIII TCCGGA 1 cut(s) 35
AciI CCGC 8 cut(s) 15, 99, 369, 587, 724, 726, 780, 875
AclI AACGTT 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 552
AcvI CACGTG 1 cut(s) 497
AdeI CACNNNGTG 1 cut(s) 484
AfaI GTAC 3 cut(s) 567, 573, 918
AfeI AGCGCT 1 cut(s) 431
AfiI CCNNNNNNNGG 2 cut(s) 725, 880
AflIII ACRYGT 1 cut(s) 494
AgsI TTSAA 2 cut(s) 406, 558
AhdI GACNNNNNGTC 1 cut(s) 519
AjnI CCWGG 4 cut(s) 26, 341, 456, 535
AluBI AGCT 6 cut(s) 175, 260, 464, 595, 679, 896
AluI AGCT 6 cut(s) 175, 260, 464, 595, 679, 896
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 1 cut(s) 534
Ama87I CYCGRG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 35
Aor51HI AGCGCT 1 cut(s) 431
AoxI GGCC 4 cut(s) 46, 328, 530, 814
ApeKI GCWGC 4 cut(s) 287, 464, 697, 758
ApoI RAATTY 1 cut(s) 552
Asp718I GGTACC 1 cut(s) 916
AspLEI GCGC 1 cut(s) 432
AspS9I GGNCC 3 cut(s) 79, 814, 871
AsuHPI GGTGA 3 cut(s) 16, 88, 601
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 2 cut(s) 79, 871
BaeGI GKGCMC 2 cut(s) 216, 476
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 2 cut(s) 213, 916
BbrPI CACGTG 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 439
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 4 cut(s) 274, 451, 709, 745
BccI CCATC 7 cut(s) 38, 161, 294, 632, 762, 788, 804
BciT130I CCWGG 4 cut(s) 28, 343, 458, 537
BciVI GTATCC 2 cut(s) 16, 685
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 3 cut(s) 104, 246, 735
BfoI RGCGCY 1 cut(s) 433
BfuI GTATCC 2 cut(s) 16, 685
BisI GCNGC 4 cut(s) 288, 465, 698, 759
BlsI GCNGC 4 cut(s) 289, 466, 699, 760
Bme1390I CCNGG 4 cut(s) 28, 343, 458, 537
Bme18I GGWCC 2 cut(s) 79, 871
BmeRI GACNNNNNGTC 1 cut(s) 519
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 79, 814, 871
BmiI GGNNCC 5 cut(s) 34, 215, 815, 873, 918
BmrFI CCNGG 4 cut(s) 28, 343, 458, 537
BmsI GCATC 1 cut(s) 574
BpmI CTGGAG 2 cut(s) 558, 783
Bpu10I CCTNAGC 2 cut(s) 381, 426
BsaAI YACGTR 1 cut(s) 497
BsaJI CCNNGG 5 cut(s) 27, 342, 527, 724, 817
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 2 cut(s) 725, 880
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 1 cut(s) 397
Bse3DI GCAATG 1 cut(s) 597
BseAI TCCGGA 1 cut(s) 35
BseBI CCWGG 4 cut(s) 28, 343, 458, 537
BseDI CCNNGG 5 cut(s) 27, 342, 527, 724, 817
BseGI GGATG 5 cut(s) 305, 643, 773, 799, 815
BseLI CCNNNNNNNGG 2 cut(s) 725, 880
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 3 cut(s) 225, 372, 440
BseNI ACTGG 1 cut(s) 397
BseRI GAGGAG 1 cut(s) 86
BseSI GKGCMC 2 cut(s) 216, 476
BseXI GCAGC 4 cut(s) 274, 451, 709, 745
BseYI CCCAGC 2 cut(s) 467, 896
Bsh1236I CGCG 1 cut(s) 726
BshFI GGCC 4 cut(s) 48, 330, 532, 816
BshNI GGYRCC 2 cut(s) 213, 916
BsiHKAI GWGCWC 1 cut(s) 439
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 2 cut(s) 36, 135
BslFI GGGAC 4 cut(s) 94, 217, 425, 857
BslI CCNNNNNNNGG 2 cut(s) 725, 880
BsmAI GTCTC 1 cut(s) 534
BsmFI GGGAC 4 cut(s) 94, 217, 425, 857
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 4 cut(s) 48, 330, 532, 816
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 3 cut(s) 216, 439, 476
Bsp13I TCCGGA 1 cut(s) 35
Bsp143I GATC 2 cut(s) 322, 704
Bsp19I CCATGG 1 cut(s) 527
BspACI CCGC 8 cut(s) 15, 99, 369, 587, 724, 726, 780, 875
BspANI GGCC 4 cut(s) 48, 330, 532, 816
BspCNI CTCAG 3 cut(s) 226, 373, 439
BspEI TCCGGA 1 cut(s) 35
BspFNI CGCG 1 cut(s) 726
BspLI GGNNCC 5 cut(s) 34, 215, 815, 873, 918
BspT107I GGYRCC 2 cut(s) 213, 916
BsrDI GCAATG 1 cut(s) 597
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 1 cut(s) 397
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 5 cut(s) 27, 342, 527, 724, 817
BssMI GATC 2 cut(s) 322, 704
BssT1I CCWWGG 1 cut(s) 527
Bst2UI CCWGG 4 cut(s) 28, 343, 458, 537
Bst4CI ACNGT 2 cut(s) 118, 366
BstBAI YACGTR 1 cut(s) 497
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 3 cut(s) 234, 381, 426
BstDSI CCRYGG 2 cut(s) 527, 724
BstF5I GGATG 5 cut(s) 305, 643, 773, 799, 815
BstFNI CGCG 1 cut(s) 726
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 1 cut(s) 432
BstKTI GATC 2 cut(s) 325, 707
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 2 cut(s) 322, 704
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstNI CCWGG 4 cut(s) 28, 343, 458, 537
BstNSI RCATGY 1 cut(s) 509
BstSCI CCNGG 4 cut(s) 26, 341, 456, 535
BstSLI GKGCMC 2 cut(s) 216, 476
BstUI CGCG 1 cut(s) 726
BstV1I GCAGC 4 cut(s) 274, 451, 709, 745
BstXI CCANNNNNNTGG 1 cut(s) 638
BsuI GTATCC 2 cut(s) 16, 685
BsuRI GGCC 4 cut(s) 48, 330, 532, 816
BtgI CCRYGG 2 cut(s) 527, 724
BtsCI GGATG 5 cut(s) 305, 643, 773, 799, 815
BtsIMutI CAGTG 2 cut(s) 371, 390
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 1 cut(s) 432
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 3 cut(s) 79, 814, 871
Cfr42I CCGCGG 1 cut(s) 727
Csp6I GTAC 3 cut(s) 566, 572, 917
CviAII CATG 7 cut(s) 183, 332, 506, 516, 528, 654, 827
CviQI GTAC 3 cut(s) 566, 572, 917
DdeI CTNAG 3 cut(s) 234, 381, 426
DpnI GATC 2 cut(s) 324, 706
DpnII GATC 2 cut(s) 322, 704
DraI TTTAAA 1 cut(s) 274
DraIII CACNNNGTG 1 cut(s) 484
DrdI GACNNNNNNGTC 1 cut(s) 735
DriI GACNNNNNGTC 1 cut(s) 519
DseDI GACNNNNNNGTC 1 cut(s) 735
EaeI YGGCCR 1 cut(s) 46
Eam1105I GACNNNNNGTC 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 527
Eco32I GATATC 1 cut(s) 907
Eco47I GGWCC 2 cut(s) 79, 871
Eco47III AGCGCT 1 cut(s) 431
Eco72I CACGTG 1 cut(s) 497
Eco88I CYCGRG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 4 cut(s) 26, 341, 456, 535
EcoRV GATATC 1 cut(s) 907
EcoT14I CCWWGG 1 cut(s) 527
ErhI CCWWGG 1 cut(s) 527
FaeI CATG 7 cut(s) 186, 335, 509, 519, 531, 657, 830
FaqI GGGAC 4 cut(s) 94, 217, 425, 857
FatI CATG 7 cut(s) 182, 331, 505, 515, 527, 653, 826
FauI CCCGC 1 cut(s) 882
FbaI TGATCA 1 cut(s) 322
FblI GTMKAC 1 cut(s) 832
Fnu4HI GCNGC 4 cut(s) 288, 465, 698, 759
FokI GGATG 5 cut(s) 312, 650, 780, 806, 822
Fsp4HI GCNGC 4 cut(s) 288, 465, 698, 759
FspBI CTAG 3 cut(s) 104, 246, 735
GlaI GCGC 1 cut(s) 431
GluI GCNGC 4 cut(s) 288, 465, 698, 759
GsaI CCCAGC 2 cut(s) 471, 900
GsuI CTGGAG 2 cut(s) 558, 783
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 4 cut(s) 48, 330, 532, 816
HapII CCGG 2 cut(s) 36, 135
HhaI GCGC 1 cut(s) 432
Hin1II CATG 7 cut(s) 186, 335, 509, 519, 531, 657, 830
Hin6I GCGC 1 cut(s) 430
HinP1I GCGC 1 cut(s) 430
HincII GTYRAC 1 cut(s) 524
HindII GTYRAC 1 cut(s) 524
HinfI GANTC 4 cut(s) 57, 107, 193, 421
HpaII CCGG 2 cut(s) 36, 135
HphI GGTGA 3 cut(s) 16, 88, 601
Hpy166II GTNNAC 4 cut(s) 180, 398, 524, 833
Hpy188I TCNGA 3 cut(s) 10, 198, 950
Hpy188III TCNNGA 4 cut(s) 36, 61, 221, 581
Hpy8I GTNNAC 4 cut(s) 180, 398, 524, 833
HpyAV CCTTC 2 cut(s) 70, 494
HpyCH4III ACNGT 2 cut(s) 118, 366
HpyCH4IV ACGT 2 cut(s) 240, 496
HpyCH4V TGCA 2 cut(s) 602, 940
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpyF3I CTNAG 3 cut(s) 234, 381, 426
HpySE526I ACGT 2 cut(s) 240, 496
Hsp92II CATG 7 cut(s) 186, 335, 509, 519, 531, 657, 830
HspAI GCGC 1 cut(s) 430
Kpn2I TCCGGA 1 cut(s) 35
KpnI GGTACC 1 cut(s) 920
Ksp22I TGATCA 1 cut(s) 322
KspI CCGCGG 1 cut(s) 727
Kzo9I GATC 2 cut(s) 322, 704
LmnI GCTCC 3 cut(s) 63, 128, 442
Lsp1109I GCAGC 4 cut(s) 274, 451, 709, 745
LweI GCATC 1 cut(s) 574
MaeI CTAG 3 cut(s) 104, 246, 735
MaeII ACGT 2 cut(s) 240, 496
MaeIII GTNAC 3 cut(s) 94, 386, 659
MalI GATC 2 cut(s) 324, 706
MboI GATC 2 cut(s) 322, 704
MboII GAAGA 2 cut(s) 53, 176
MfeI CAATTG 1 cut(s) 50
MhlI GDGCHC 3 cut(s) 216, 439, 476
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 5 cut(s) 50, 268, 552, 619, 921
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 170
Mox20I TGGCCA 1 cut(s) 48
MroI TCCGGA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 48
MseI TTAA 2 cut(s) 255, 273
MslI CAYNNNNRTG 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 726
MspI CCGG 2 cut(s) 36, 135
MspR9I CCNGG 4 cut(s) 28, 343, 458, 537
MunI CAATTG 1 cut(s) 50
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 4 cut(s) 28, 343, 458, 537
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 1 cut(s) 608
NcoI CCATGG 1 cut(s) 527
NdeII GATC 2 cut(s) 322, 704
NlaIII CATG 7 cut(s) 186, 335, 509, 519, 531, 657, 830
NlaIV GGNNCC 5 cut(s) 34, 215, 815, 873, 918
NmeAIII GCCGAG 1 cut(s) 842
NmuCI GTSAC 2 cut(s) 94, 386
NspI RCATGY 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 1 cut(s) 772
PfeI GAWTC 3 cut(s) 57, 193, 421
PfoI TCCNGGA 1 cut(s) 535
PkrI GCNGC 4 cut(s) 289, 466, 699, 760
PleI GAGTC 1 cut(s) 115
PmaCI CACGTG 1 cut(s) 497
PmlI CACGTG 1 cut(s) 497
PpsI GAGTC 1 cut(s) 115
Ppu21I YACGTR 1 cut(s) 497
PpuMI RGGWCCY 1 cut(s) 79
Psp1406I AACGTT 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 4 cut(s) 26, 341, 456, 535
PspCI CACGTG 1 cut(s) 497
PspFI CCCAGC 2 cut(s) 467, 896
PspGI CCWGG 4 cut(s) 26, 341, 456, 535
PspN4I GGNNCC 5 cut(s) 34, 215, 815, 873, 918
PspPI GGNCC 3 cut(s) 79, 814, 871
PspPPI RGGWCCY 1 cut(s) 79
PsrI GAACNNNNNNTAC 2 cut(s) 676, 708
RsaI GTAC 3 cut(s) 567, 573, 918
RsaNI GTAC 3 cut(s) 566, 572, 917
RseI CAYNNNNRTG 1 cut(s) 336
SacII CCGCGG 1 cut(s) 727
SaqAI TTAA 2 cut(s) 255, 273
SatI GCNGC 4 cut(s) 288, 465, 698, 759
Sau3AI GATC 2 cut(s) 322, 704
Sau96I GGNCC 3 cut(s) 79, 814, 871
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 4 cut(s) 28, 343, 458, 537
SduI GDGCHC 3 cut(s) 216, 439, 476
SfaNI GCATC 1 cut(s) 574
Sfr303I CCGCGG 1 cut(s) 727
SgrBI CCGCGG 1 cut(s) 727
SinI GGWCC 2 cut(s) 79, 871
SmiMI CAYNNNNRTG 1 cut(s) 336
Sse9I AATT 5 cut(s) 50, 268, 552, 619, 921
SsiI CCGC 8 cut(s) 15, 99, 369, 587, 724, 726, 780, 875
SspMI CTAG 3 cut(s) 104, 246, 735
StyD4I CCNGG 4 cut(s) 26, 341, 456, 535
StyI CCWWGG 1 cut(s) 527
TaaI ACNGT 2 cut(s) 118, 366
TaiI ACGT 2 cut(s) 243, 499
TasI AATT 5 cut(s) 50, 268, 552, 619, 921
TatI WGTACW 1 cut(s) 571
TfiI GAWTC 3 cut(s) 57, 193, 421
Tru1I TTAA 2 cut(s) 255, 273
Tru9I TTAA 2 cut(s) 255, 273
TscAI CASTG 2 cut(s) 371, 397
TseFI GTSAC 2 cut(s) 94, 386
TseI GCWGC 4 cut(s) 287, 464, 697, 758
Tsp45I GTSAC 2 cut(s) 94, 386
TspDTI ATGAA 2 cut(s) 605, 875
TspGWI ACGGA 2 cut(s) 115, 803
TspRI CASTG 2 cut(s) 371, 397
VpaK11BI GGWCC 2 cut(s) 79, 871
XapI RAATTY 1 cut(s) 552
XceI RCATGY 1 cut(s) 509
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 832
XspI CTAG 3 cut(s) 104, 246, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.