Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008433

Physical Location & Seq

Genomic Coordinates Forward (+)

23361128 .. 23365574

Gene Structure 4447 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G239200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCATCCGATGCTGCCATTGTTACTTGGGGCTCGGGTGAAGATGGACAATTGGGAATCGGGAACAACGAGGAGATGGAGTGGGTATGTGTTGTCGAAGCCCTCCAGTCACGGACTGTCCGGTCTGTTGTCGCTGGTAGCCGAAACTCTCTTGCCATTTGCGATGATGGCAAGTTGTTTACATGGGGTTGGAACCAAAGAGGAACCTTGGGGCACCCTCCAGAGACCAAAACTGAGAACATTCCTAGCCAAGTTAAAGCTCTTGCCAATGCTAAAATTGTTCAGGCTGCTATTGGTGGATGGCATTGTTTGGCTGTTGATGATCAAGGCCGTGCTTACGCCTGGGGTGGAAATGAGTATGGACAGTGTAGTGAAGAACCTGAGCGGAAAGATGATACTGGTAGACCTTTGAGAAGGGATATAGTGATCCCTCAGCGCTGTGCACCGAAGCTTGTAGTCCGCCAGGTAGCTGCTGGGGGTACTCACTCTGTGGTACTTACACGTGATGGGCAAGTATGGACTTGGGGTCAGCCGTGGCCTCCGGGAGACATAAAACAAATTTCAACACCTGTGCGAGTACAAGGTCTTGATGCAGTGAAGCTCATTGCAGTTGGGGCATTTCATAATTTGGCTCTTCAAGAGGATGGTACTTTATGGGCATGGGGTAACAATGAATATGGACAGCTTGGAACTGGAGATACCCAGCCTAGATCACAACCTATTCCTGTCCAGGGTCTTTCTGGTCTTACTTTGGTGGATATTGCTGCTGGAGGATGGCATTCTACTTCACTCACAGATGATGGAGAGGTGTATGGTTGGGGACGAGGGGAACACGGAAGGCTTGGATTTGGCGATAATGATAAAAGCAGTAAAATGGTGCCCCAAAGGGTTCATCTTTTAGCTGGGGAGGATATTGTTCAGGTGTCTTGTGGAGGCACTCACTCGGTTGCATTAACACGTGATGGGCGCATGTTTTCGTTTGGTCGAGGTGACCATGGACGTCTTGGATATGGAAGGAAGGTGACAACCGGTCAACCAATGGAAGTGCCCATCAACATCCCTCCCAGAAATGGCACTGAAGACAATGGACACTGGATTGCCAAACTTGTTGCTTGTGGGGGACGCCATACTCTGGCGATAGTAGATTGGAAAGCCGATGAAGCAGAAGAATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1

Protein Analysis

392

Amino Acids

42.1

Weight (kDa)

5.68

Isoelectric Point (pI)

30.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02510 AT3G02510 AT3G02510 AT5G16040 AT5G16040
fragaria_vesca	FvH4_6g45310
malus_domestica	MD07G1096100.v1.1 MD09G1085900.v1.1 MD17G1074800.v1.1
prunus_persica	Prupe.3G239200_v2.0.a1 Prupe.3G239200_v2.0.a1
pyrus_communis	pycom09g01100 pycom17g07550
rosa_chinensis	RchiOBHm_Chr2g0163071
rosa_laevigata	RLG00000021369
rosa_multiflora	Rmu_sc0003555.1_g000021 Rmu_sc0003984.1_g000005
rosa_roxburghii	Rroxscaffold_2G00087570
rosa_rugosa	Rorug02G0500100
rosa_samantha	Rh2AG566500 Rh2BG578900 Rh2DG589200
rosa_wichuraiana	Rw2G046900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	121
AatII	GACGTC	1 cut(s)	1003
AccB1I	GGYRCC	2 cut(s)	213, 877
AccB7I	CCANNNNNTGG	1 cut(s)	1132
AccBSI	CCGCTC	1 cut(s)	385
AccI	GTMKAC	1 cut(s)	403
AciI	CCGC	2 cut(s)	385, 460
AclWI	GGATC	1 cut(s)	421
AcsI	RAATTY	1 cut(s)	558
AcuI	CTGAAG	1 cut(s)	1098
AcvI	CACGTG	2 cut(s)	503, 959
AcyI	GRCGYC	2 cut(s)	1000, 1123
AdeI	CACNNNGTG	1 cut(s)	490
AfaI	GTAC	4 cut(s)	481, 495, 579, 649
AfeI	AGCGCT	1 cut(s)	437
AfiI	CCNNNNNNNGG	3 cut(s)	731, 1070, 1132
AflIII	ACRYGT	2 cut(s)	500, 956
AgeI	ACCGGT	1 cut(s)	1028
AgsI	TTSAA	2 cut(s)	564, 638
AhdI	GACNNNNNGTC	2 cut(s)	525, 1029
AjnI	CCWGG	3 cut(s)	341, 462, 729
AluBI	AGCT	6 cut(s)	260, 451, 470, 601, 685, 902
AluI	AGCT	6 cut(s)	260, 451, 470, 601, 685, 902
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	218, 540
Alw44I	GTGCAC	1 cut(s)	441
AlwI	GGATC	1 cut(s)	421
Ama87I	CYCGRG	1 cut(s)	34
Aor51HI	AGCGCT	1 cut(s)	437
AoxI	GGCC	2 cut(s)	328, 536
ApaLI	GTGCAC	1 cut(s)	441
ApeKI	GCWGC	4 cut(s)	14, 287, 470, 764
ApoI	RAATTY	1 cut(s)	558
AsiGI	ACCGGT	1 cut(s)	1028
AspLEI	GCGC	2 cut(s)	438, 969
AsuC2I	CCSGG	1 cut(s)	543
AsuHPI	GGTGA	3 cut(s)	50, 1001, 1033
AvaI	CYCGRG	1 cut(s)	34
BaeGI	GKGCMC	4 cut(s)	216, 445, 882, 1050
BanI	GGYRCC	2 cut(s)	213, 877
BanII	GRGCYC	1 cut(s)	35
BbrPI	CACGTG	2 cut(s)	503, 959
BbsI	GAAGAC	1 cut(s)	1086
Bbv12I	GWGCWC	1 cut(s)	445
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	3 cut(s)	274, 457, 751
BceAI	ACGGC	2 cut(s)	315, 517
BcgI	CGANNNNNNTGC	1 cut(s)	1152
BciT130I	CCWGG	3 cut(s)	343, 464, 731
BclI	TGATCA	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	543
BcoDI	GTCTC	2 cut(s)	218, 540
BfaI	CTAG	2 cut(s)	246, 708
BfoI	RGCGCY	1 cut(s)	439
BisI	GCNGC	4 cut(s)	15, 288, 471, 765
BlsI	GCNGC	4 cut(s)	16, 289, 472, 766
Bme1390I	CCNGG	4 cut(s)	343, 464, 543, 731
BmeRI	GACNNNNNGTC	2 cut(s)	525, 1029
BmeT110I	CYCGRG	1 cut(s)	34
BmiI	GGNNCC	4 cut(s)	194, 205, 215, 879
BmrFI	CCNGG	4 cut(s)	343, 464, 543, 731
BmsI	GCATC	2 cut(s)	14, 580
BpiI	GAAGAC	1 cut(s)	1086
BpmI	CTGGAG	4 cut(s)	89, 204, 714, 789
Bpu10I	CCTNAGC	2 cut(s)	381, 432
BpuMI	CCSGG	1 cut(s)	543
BsaAI	YACGTR	2 cut(s)	503, 959
BsaHI	GRCGYC	2 cut(s)	1000, 1123
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	5 cut(s)	207, 342, 533, 730, 994
BsaWI	WCCGGW	2 cut(s)	120, 1028
BsaXI	ACNNNNNCTCC	2 cut(s)	65, 95
Bsc4I	CCNNNNNNNGG	3 cut(s)	731, 1070, 1132
Bse118I	RCCGGY	1 cut(s)	1028
Bse1I	ACTGG	4 cut(s)	106, 403, 697, 1097
Bse3DI	GCAATG	1 cut(s)	603
BseBI	CCWGG	3 cut(s)	343, 464, 731
BseDI	CCNNGG	5 cut(s)	207, 342, 533, 730, 994
BseGI	GGATG	5 cut(s)	5, 305, 649, 779, 1056
BseLI	CCNNNNNNNGG	3 cut(s)	731, 1070, 1132
BseMI	GCAATG	1 cut(s)	603
BseMII	CTCAG	3 cut(s)	225, 372, 446
BseNI	ACTGG	4 cut(s)	106, 403, 697, 1097
BseRI	GAGGAG	1 cut(s)	86
BseSI	GKGCMC	4 cut(s)	216, 445, 882, 1050
BseXI	GCAGC	3 cut(s)	274, 457, 751
BseYI	CCCAGC	3 cut(s)	473, 702, 902
BshFI	GGCC	2 cut(s)	330, 538
BshNI	GGYRCC	2 cut(s)	213, 877
BshTI	ACCGGT	1 cut(s)	1028
BsiHKAI	GWGCWC	1 cut(s)	445
BsiHKCI	CYCGRG	1 cut(s)	34
BsiSI	CCGG	3 cut(s)	121, 542, 1029
BslFI	GGGAC	2 cut(s)	834, 1134
BslI	CCNNNNNNNGG	3 cut(s)	731, 1070, 1132
BsmAI	GTCTC	2 cut(s)	218, 540
BsmFI	GGGAC	2 cut(s)	834, 1134
BsmI	GAATGC	1 cut(s)	778
BsnI	GGCC	2 cut(s)	330, 538
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	1 cut(s)	34
Bsp1286I	GDGCHC	5 cut(s)	35, 216, 445, 882, 1050
Bsp143I	GATC	3 cut(s)	322, 426, 710
Bsp19I	CCATGG	1 cut(s)	994
BspACI	CCGC	2 cut(s)	385, 460
BspANI	GGCC	2 cut(s)	330, 538
BspCNI	CTCAG	3 cut(s)	226, 373, 445
BspLI	GGNNCC	4 cut(s)	194, 205, 215, 879
BspPI	GGATC	1 cut(s)	421
BspQI	GCTCTTC	1 cut(s)	639
BspT107I	GGYRCC	2 cut(s)	213, 877
BspTNI	GGTCTC	1 cut(s)	218
BsrBI	CCGCTC	1 cut(s)	385
BsrDI	GCAATG	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	1028
BsrI	ACTGG	4 cut(s)	106, 403, 697, 1097
BssAI	RCCGGY	1 cut(s)	1028
BssECI	CCNNGG	5 cut(s)	207, 342, 533, 730, 994
BssMI	GATC	3 cut(s)	322, 426, 710
BssNI	GRCGYC	2 cut(s)	1000, 1123
BssT1I	CCWWGG	2 cut(s)	207, 994
Bst2UI	CCWGG	3 cut(s)	343, 464, 731
Bst4CI	ACNGT	2 cut(s)	118, 366
Bst6I	CTCTTC	1 cut(s)	639
BstACI	GRCGYC	2 cut(s)	1000, 1123
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstBAI	YACGTR	2 cut(s)	503, 959
BstDEI	CTNAG	3 cut(s)	234, 381, 432
BstDSI	CCRYGG	2 cut(s)	533, 994
BstEII	GGTNACC	1 cut(s)	989
BstF5I	GGATG	5 cut(s)	5, 305, 649, 779, 1056
BstH2I	RGCGCY	1 cut(s)	439
BstHHI	GCGC	2 cut(s)	438, 969
BstKTI	GATC	3 cut(s)	325, 429, 713
BstMAI	GTCTC	2 cut(s)	218, 540
BstMBI	GATC	3 cut(s)	322, 426, 710
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 168, 614, 1160
BstNI	CCWGG	3 cut(s)	343, 464, 731
BstNSI	RCATGY	1 cut(s)	973
BstPI	GGTNACC	1 cut(s)	989
BstSCI	CCNGG	4 cut(s)	341, 462, 541, 729
BstSLI	GKGCMC	4 cut(s)	216, 445, 882, 1050
BstV1I	GCAGC	3 cut(s)	274, 457, 751
BstV2I	GAAGAC	1 cut(s)	1086
BsuRI	GGCC	2 cut(s)	330, 538
BtgI	CCRYGG	2 cut(s)	533, 994
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	5 cut(s)	5, 305, 649, 779, 1056
BtsI	GCAGTG	1 cut(s)	600
BtsIMutI	CAGTG	4 cut(s)	371, 600, 1074, 1090
CfoI	GCGC	2 cut(s)	438, 969
Cfr10I	RCCGGY	1 cut(s)	1028
CseI	GACGC	1 cut(s)	1131
Csp6I	GTAC	4 cut(s)	480, 494, 578, 648
CspAI	ACCGGT	1 cut(s)	1028
CviAII	CATG	4 cut(s)	183, 660, 970, 995
CviQI	GTAC	4 cut(s)	480, 494, 578, 648
DdeI	CTNAG	3 cut(s)	234, 381, 432
DpnI	GATC	3 cut(s)	324, 428, 712
DpnII	GATC	3 cut(s)	322, 426, 710
DraIII	CACNNNGTG	1 cut(s)	490
DrdI	GACNNNNNNGTC	1 cut(s)	121
DriI	GACNNNNNGTC	2 cut(s)	525, 1029
DseDI	GACNNNNNNGTC	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	639
Eam1105I	GACNNNNNGTC	2 cut(s)	525, 1029
EarI	CTCTTC	1 cut(s)	639
EciI	GGCGGA	1 cut(s)	449
Eco130I	CCWWGG	2 cut(s)	207, 994
Eco24I	GRGCYC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	218
Eco47III	AGCGCT	1 cut(s)	437
Eco57I	CTGAAG	1 cut(s)	1098
Eco72I	CACGTG	2 cut(s)	503, 959
Eco88I	CYCGRG	1 cut(s)	34
Eco91I	GGTNACC	1 cut(s)	989
EcoO65I	GGTNACC	1 cut(s)	989
EcoRII	CCWGG	3 cut(s)	341, 462, 729
EcoT14I	CCWWGG	2 cut(s)	207, 994
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	2 cut(s)	207, 994
FaeI	CATG	4 cut(s)	186, 663, 973, 998
FaqI	GGGAC	2 cut(s)	834, 1134
FatI	CATG	4 cut(s)	182, 659, 969, 994
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	4 cut(s)	15, 288, 471, 765
FokI	GGATG	4 cut(s)	312, 656, 786, 1043
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	4 cut(s)	15, 288, 471, 765
FspBI	CTAG	2 cut(s)	246, 708
GlaI	GCGC	2 cut(s)	437, 968
GluI	GCNGC	4 cut(s)	15, 288, 471, 765
GsaI	CCCAGC	3 cut(s)	477, 706, 906
GsuI	CTGGAG	4 cut(s)	89, 204, 714, 789
HaeII	RGCGCY	1 cut(s)	439
HaeIII	GGCC	2 cut(s)	330, 538
HapII	CCGG	3 cut(s)	121, 542, 1029
HgaI	GACGC	1 cut(s)	1131
HhaI	GCGC	2 cut(s)	438, 969
Hin1I	GRCGYC	2 cut(s)	1000, 1123
Hin1II	CATG	4 cut(s)	186, 663, 973, 998
Hin6I	GCGC	2 cut(s)	436, 967
HinP1I	GCGC	2 cut(s)	436, 967
HincII	GTYRAC	1 cut(s)	1034
HindII	GTYRAC	1 cut(s)	1034
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	2 cut(s)	57, 1169
HpaII	CCGG	3 cut(s)	121, 542, 1029
HphI	GGTGA	3 cut(s)	50, 1001, 1033
Hpy166II	GTNNAC	4 cut(s)	180, 404, 443, 1034
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	4 cut(s)	61, 221, 587, 638
Hpy8I	GTNNAC	4 cut(s)	180, 404, 443, 1034
HpyAV	CCTTC	4 cut(s)	408, 831, 1008, 1012
HpyCH4III	ACNGT	2 cut(s)	118, 366
HpyCH4IV	ACGT	3 cut(s)	502, 958, 1000
HpyCH4V	TGCA	4 cut(s)	443, 593, 608, 950
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 168, 614, 1160
HpyF3I	CTNAG	3 cut(s)	234, 381, 432
HpySE526I	ACGT	3 cut(s)	502, 958, 1000
Hsp92I	GRCGYC	2 cut(s)	1000, 1123
Hsp92II	CATG	4 cut(s)	186, 663, 973, 998
HspAI	GCGC	2 cut(s)	436, 967
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	322, 426, 710
LguI	GCTCTTC	1 cut(s)	639
Lsp1109I	GCAGC	3 cut(s)	274, 457, 751
LweI	GCATC	2 cut(s)	14, 580
MaeI	CTAG	2 cut(s)	246, 708
MaeII	ACGT	3 cut(s)	502, 958, 1000
MaeIII	GTNAC	5 cut(s)	22, 108, 665, 989, 1021
MalI	GATC	3 cut(s)	324, 428, 712
MbiI	CCGCTC	1 cut(s)	385
MboI	GATC	3 cut(s)	322, 426, 710
MboII	GAAGA	4 cut(s)	53, 386, 626, 1091
MfeI	CAATTG	1 cut(s)	50
MhlI	GDGCHC	5 cut(s)	35, 216, 445, 882, 1050
MluCI	AATT	4 cut(s)	50, 276, 558, 625
MmeI	TCCRAC	1 cut(s)	170
MseI	TTAA	2 cut(s)	255, 953
MspI	CCGG	3 cut(s)	121, 542, 1029
MspR9I	CCNGG	4 cut(s)	343, 464, 543, 731
MunI	CAATTG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	778
MvaI	CCWGG	3 cut(s)	343, 464, 731
MwoI	GCNNNNNNNGC	4 cut(s)	11, 168, 614, 1160
NciI	CCSGG	1 cut(s)	543
NcoI	CCATGG	1 cut(s)	994
NdeII	GATC	3 cut(s)	322, 426, 710
NlaIII	CATG	4 cut(s)	186, 663, 973, 998
NlaIV	GGNNCC	4 cut(s)	194, 205, 215, 879
NmuCI	GTSAC	3 cut(s)	108, 989, 1021
NspI	RCATGY	1 cut(s)	973
PciSI	GCTCTTC	1 cut(s)	639
PcsI	WCGNNNNNNNCGW	1 cut(s)	66
PctI	GAATGC	1 cut(s)	778
PfeI	GAWTC	2 cut(s)	57, 1169
PflMI	CCANNNNNTGG	1 cut(s)	1132
PfoI	TCCNGGA	1 cut(s)	541
PinAI	ACCGGT	1 cut(s)	1028
PkrI	GCNGC	4 cut(s)	16, 289, 472, 766
PmaCI	CACGTG	2 cut(s)	503, 959
PmlI	CACGTG	2 cut(s)	503, 959
Ppu21I	YACGTR	2 cut(s)	503, 959
Psp6I	CCWGG	3 cut(s)	341, 462, 729
PspCI	CACGTG	2 cut(s)	503, 959
PspEI	GGTNACC	1 cut(s)	989
PspFI	CCCAGC	3 cut(s)	473, 702, 902
PspGI	CCWGG	3 cut(s)	341, 462, 729
PspN4I	GGNNCC	4 cut(s)	194, 205, 215, 879
PsrI	GAACNNNNNNTAC	2 cut(s)	682, 714
RsaI	GTAC	4 cut(s)	481, 495, 579, 649
RsaNI	GTAC	4 cut(s)	480, 494, 578, 648
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	2 cut(s)	255, 953
SatI	GCNGC	4 cut(s)	15, 288, 471, 765
Sau3AI	GATC	3 cut(s)	322, 426, 710
ScrFI	CCNGG	4 cut(s)	343, 464, 543, 731
SduI	GDGCHC	5 cut(s)	35, 216, 445, 882, 1050
SfaNI	GCATC	2 cut(s)	14, 580
Sse9I	AATT	4 cut(s)	50, 276, 558, 625
SsiI	CCGC	2 cut(s)	385, 460
SspMI	CTAG	2 cut(s)	246, 708
StyD4I	CCNGG	4 cut(s)	341, 462, 541, 729
StyI	CCWWGG	2 cut(s)	207, 994
TaaI	ACNGT	2 cut(s)	118, 366
TaiI	ACGT	3 cut(s)	505, 961, 1003
TaqI	TCGA	2 cut(s)	96, 985
TasI	AATT	4 cut(s)	50, 276, 558, 625
TatI	WGTACW	1 cut(s)	577
TfiI	GAWTC	2 cut(s)	57, 1169
Tru1I	TTAA	2 cut(s)	255, 953
Tru9I	TTAA	2 cut(s)	255, 953
TscAI	CASTG	4 cut(s)	371, 600, 1081, 1097
TseFI	GTSAC	3 cut(s)	108, 989, 1021
TseI	GCWGC	4 cut(s)	14, 287, 470, 764
Tsp45I	GTSAC	3 cut(s)	108, 989, 1021
TspDTI	ATGAA	4 cut(s)	611, 687, 881, 1173
TspGWI	ACGGA	2 cut(s)	127, 849
TspRI	CASTG	4 cut(s)	371, 600, 1081, 1097
Van91I	CCANNNNNTGG	1 cut(s)	1132
VneI	GTGCAC	1 cut(s)	441
XapI	RAATTY	1 cut(s)	558
XceI	RCATGY	1 cut(s)	973
XcmI	CCANNNNNNNNNTGG	3 cut(s)	470, 737, 1001
XmiI	GTMKAC	1 cut(s)	403
XspI	CTAG	2 cut(s)	246, 708
ZraI	GACGTC	1 cut(s)	1001

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.