RchiOBHm_Chr2g0163071

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0008433
Physical Location & Seq
Forward (+)
78713830 .. 78721159
7330 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53127

Sequence Viewer

Length: 2439 bp
ATGGTTAACCCTCATTGTTCCGTCTCTCACAGATATCATTCTTCAACTAGACCTCATTCAAAGGCAGTTGATGGTTTGTGGTGCGGTGGCGTTTGTTCGTTGTTACCTACACCTACTCCAGTTATGGAGAAACCTTTAGGCTTCGGCCTATTCATCTTTATCTACGTTGTCTTCGGAGGCAGTGCATCTTTGGAGAGGAGTTTCAGCGCTGCTGGGGCGGTGTTGGCGAGCCAAATTTATATTGGTACGAGTTCAGAGGTTGGTGGTGATTCCTGGGAGAAGTGGGATCCGGGTAGAAGATTTGGTGATCTCAATGGGTCTCCTCTTCCCGGCGATGCTGCTGAAGCGGTGGGGATTCGGTGGGTGCAAAACGGGGCTGTCATCCTGCCGGTCTGCTCGACGGTGTGGGTGTCGTACCCCACTAGTGGATCTCTTCTGGCTGGGGTTGGAGTCCGGGTTTGGGTCCTCAACGACGACGTTCTTCTATGCCAGGGTGGTGTGGCAGTCCTCGGGCTATCGTTTAGCGGATTGACTGATTTGGGGAGTGGCACTGGCGGCAGGGTCGTTTGGCCAGATGTTGTGGGGGCTGGGAATCGTTCAGGTGGGTTCTGGGCTCAGATGGATTTGGGCTGGGGTCGGCACTGGTTGATAAGAACAGCAGGTTTTGGACCCCCACAGCTTTGGATCCGGATTTGGGATCCGGGTGGTGTTTGCAAATGGTTTCGGATCTGGGATCCGGGTGGACATTGGGTTTGGTCTGCAACCCCTTATCTTTTGTGGGCTGTTTGTTTTGTACATTGGAATGGGGCTCTTGTGCTTTATTGGTATTTGATCCAGGACCCTATTCTATGGTATTTGTACGTGAAAGATCGTCTGCCAACATGGTCATGTTCTGACAACCTTGACCGGCTTAGATCTTTAGGTGGGAGAGTGCCTTCATTCTGGCGCCAAGTTGATTTCTGTCAATTTGTGTGTTGGAGTCCGATGGGTAGTCAAACCACCGACTACTCAATTCACTATACGGCTGCAATCCGTAGTGTAAAATCAGCGTGGTGTCTTGACGTTGCTGCTCTTGCGTTATTAACCACAACCCCGGAAACAATTGGCGCGTCAAACTTTTCCCACTACGACGCCGTCTTGCCCACTTGGAGTTTGTGCGCATCCTGTTCCAAACCCAAATCAGCAGCTCTGCCTATATATATAATAAACTCTGAGTGCTCCACAACTCTATACCCCTGCTTCTACTATTCCATCACTCTTCCCATGGTATCCGATACCGCCATTATCACCTGGGGTTCCGGAGAAGATGGCCAATTGGGAATCGGGAGCAACGTGGATAAGGACCTCGTGTGCGTTGTCACCGCCCTAGAGTCCCAGACTGTTCGCTCCGTTGTCGCCGGTAGCAGAAACTCTCTCGCCATTTGTGAAGATGGCAAGCTGTTTACATGGGGTTGGAATCAGAGAGGGACTTTGGGGCACCCTCCCGAGAGCAAAACTGAGGACGTTCCTAGTCAAGTTAAAGCTCTTGCCAATTTTAAAATCGTTCAGGCTGCTATTGGTGGATGGCATTGTTTGGCTGTTGATGATCAAGGCCATGCTTATGCCTGGGGTGGAAATGAGTATGGACAGTGTGGTGGAGAACCTGAGCGTGACACTGGTAAACCTTTGAAAAGGGACATAGTGATTCCTCAGCGCTGTGCTCCCAAACTTGTAGTTCGCCAGGTAGCTGCTGGGGGCACTCACTCTGTGGTGCTTACACGTGAAGGGCATGTATGGACATGGGGTCAACCATGGCCTCCTGGAGACATAAAACAAATTTCAACACCTGTACGAGTACAAGGTCTTGATGCGGTGAAGCTTATTGCAGTAGGGGCATTTCATAATTTGGCTCTCCAAGAGGATGGCACTTTATGGGCATGGGGTAACAACGAATATGGACAGCTTGGAACAGGGGATACGCAGCCAAGATCACAACCCATTCCTGTCCGCGGACTGTCTGGTCTTACTTTGGTGGATATTGCTGCTGGAGGATGGCATTCTACCGCACTAACGGAGGATGGAGAGGTGTATGGATGGGGCCGAGGGGAACATGGTAGACTTGGTTTCGGCGATAATGATAAGAGCAGTAAAATGGTCCCGCAAAAGGTTCATCTTTTAGCTGGGGAGGATATCGTTCAGGTGTCTTGTGGAGGCACTCACTCTGCTGCATTAACACGTGATGGGCGCATTTTCTCGTATGGTCGAGGTGACCATGGACGTCTCGGATATGGAAGGAAGGTAACAACTGGTCAACCGATGGAAGTCCCCATCAAACTCCCTCCCAAAAATGTCAGCGACACTGAAGCCCAGGGACATTGGATTGCCAAACTTATTGCCTCTGGAGGTCGCCATACTCTGGCAATAGTCGAATGGAAATCAGATGAATCAACTGAATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1

Protein Analysis

812

Amino Acids

87.91

Weight (kDa)

6.42

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alsin_RLD PF25384 425 - 533 1.5e-09 Alsin RCC1-like domain
WD40_RLD PF25390 428 - 800 5.3e-89 RCC1-like domain
RCC1 PF00415 429 - 474 3.7e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 461 - 489 1.1e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 477 - 527 1.1e-14 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 514 - 543 3.3e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 530 - 585 1.1e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 572 - 596 2.2e-07 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 618 - 647 5.8e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 634 - 683 3.4e-15 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 636 - 708 2.9e-06 Alsin RCC1-like domain
RCC1_2 PF13540 671 - 698 7.6e-10 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 686 - 737 2.1e-16 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 724 - 752 1.5e-08 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 740 - 801 1.1e-06 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1998
AatII GACGTC 1 cut(s) 2260
Acc16I TGCGCA 1 cut(s) 1159
Acc36I ACCTGC 1 cut(s) 650
AccB1I GGYRCC 2 cut(s) 945, 1476
AccB7I CCANNNNNTGG 1 cut(s) 2395
AccI GTMKAC 1 cut(s) 2095
AccII CGCG 2 cut(s) 1109, 1989
AccIII TCCGGA 2 cut(s) 687, 1298
AcoI YGGCCR 2 cut(s) 569, 1309
AcsI RAATTY 2 cut(s) 234, 1815
AcuI CTGAAG 2 cut(s) 363, 2361
AcvI CACGTG 2 cut(s) 1760, 2216
AcyI GRCGYC 3 cut(s) 946, 1131, 2257
AdeI CACNNNGTG 1 cut(s) 1747
AfaI GTAC 6 cut(s) 247, 416, 795, 860, 1830, 1836
AfeI AGCGCT 2 cut(s) 208, 1694
AfiI CCNNNNNNNGG 7 cut(s) 329, 425, 460, 694, 1988, 2143, 2395
AflIII ACRYGT 2 cut(s) 1757, 2213
AgsI TTSAA 4 cut(s) 45, 60, 1669, 1821
AhdI GACNNNNNGTC 1 cut(s) 1782
AhlI ACTAGT 1 cut(s) 422
AjnI CCWGG 8 cut(s) 272, 489, 834, 1289, 1604, 1719, 1798, 2346
AluBI AGCT 8 cut(s) 679, 1187, 1438, 1523, 1727, 1858, 1942, 2159
AluI AGCT 8 cut(s) 679, 1187, 1438, 1523, 1727, 1858, 1942, 2159
Alw21I GWGCWC 2 cut(s) 1220, 1702
Alw26I GTCTC 4 cut(s) 28, 324, 1797, 2264
Ama87I CYCGRG 2 cut(s) 509, 1484
Aor13HI TCCGGA 2 cut(s) 687, 1298
Aor51HI AGCGCT 2 cut(s) 208, 1694
AoxI GGCC 6 cut(s) 145, 569, 1309, 1591, 1793, 2077
ApoI RAATTY 2 cut(s) 234, 1815
ArsI GACNNNNNNTTYG 2 cut(s) 735, 767
AspLEI GCGC 6 cut(s) 209, 948, 1109, 1160, 1695, 2226
AspS9I GGNCC 6 cut(s) 463, 668, 838, 1342, 2077, 2134
AsuC2I CCSGG 6 cut(s) 291, 330, 455, 702, 738, 1094
AsuHPI GGTGA 6 cut(s) 278, 317, 1279, 1351, 1864, 2258
AvaI CYCGRG 2 cut(s) 509, 1484
AvaII GGWCC 5 cut(s) 463, 668, 838, 1342, 2134
BaeGI GKGCMC 2 cut(s) 1479, 1739
BalI TGGCCA 2 cut(s) 571, 1311
BamHI GGATCC 4 cut(s) 286, 684, 697, 733
BanI GGYRCC 2 cut(s) 945, 1476
BanII GRGCYC 2 cut(s) 616, 811
BauI CACGAG 1 cut(s) 1346
BbrPI CACGTG 2 cut(s) 1760, 2216
BbsI GAAGAC 1 cut(s) 163
Bbv12I GWGCWC 2 cut(s) 1220, 1702
BbvCI CCTCAGC 1 cut(s) 1689
BceAI ACGGC 2 cut(s) 1038, 1118
BciT130I CCWGG 8 cut(s) 274, 491, 836, 1291, 1606, 1721, 1800, 2348
BciVI GTATCC 2 cut(s) 1279, 1948
BclI TGATCA 1 cut(s) 1585
BcnI CCSGG 6 cut(s) 291, 330, 455, 702, 738, 1094
BcoDI GTCTC 4 cut(s) 28, 324, 1797, 2264
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 4 cut(s) 48, 423, 1367, 1509
BfoI RGCGCY 3 cut(s) 210, 949, 1696
BfuAI ACCTGC 1 cut(s) 650
BfuI GTATCC 2 cut(s) 1279, 1948
BglII AGATCT 1 cut(s) 914
Bme18I GGWCC 5 cut(s) 463, 668, 838, 1342, 2134
BmeRI GACNNNNNGTC 1 cut(s) 1782
BmeT110I CYCGRG 2 cut(s) 509, 1484
BmgT120I GGNCC 6 cut(s) 463, 668, 838, 1342, 2077, 2134
BmsI GCATC 4 cut(s) 194, 325, 1169, 1837
BpiI GAAGAC 1 cut(s) 163
BpmI CTGGAG 4 cut(s) 102, 1821, 2046, 2400
Bpu10I CCTNAGC 2 cut(s) 1644, 1689
BpuMI CCSGG 6 cut(s) 291, 330, 455, 702, 738, 1094
BsaAI YACGTR 3 cut(s) 862, 1760, 2216
BsaHI GRCGYC 3 cut(s) 946, 1131, 2257
BsaI GGTCTC 1 cut(s) 324
BsaWI WCCGGW 2 cut(s) 687, 1298
BsaXI ACNNNNNCTCC 4 cut(s) 100, 130, 441, 471
Bsc4I CCNNNNNNNGG 7 cut(s) 329, 425, 460, 694, 1988, 2143, 2395
Bse118I RCCGGY 3 cut(s) 388, 906, 1397
Bse1I ACTGG 5 cut(s) 119, 556, 647, 1660, 2290
BseAI TCCGGA 2 cut(s) 687, 1298
BseBI CCWGG 8 cut(s) 274, 491, 836, 1291, 1606, 1721, 1800, 2348
BseGI GGATG 7 cut(s) 381, 1160, 1568, 1906, 2036, 2062, 2078
BseLI CCNNNNNNNGG 7 cut(s) 329, 425, 460, 694, 1988, 2143, 2395
BseMII CTCAG 5 cut(s) 629, 1203, 1488, 1635, 1703
BseNI ACTGG 5 cut(s) 119, 556, 647, 1660, 2290
BseRI GAGGAG 2 cut(s) 211, 312
BseSI GKGCMC 2 cut(s) 1479, 1739
BseYI CCCAGC 6 cut(s) 212, 440, 587, 630, 1730, 2159
Bsh1236I CGCG 2 cut(s) 1109, 1989
BshFI GGCC 6 cut(s) 147, 571, 1311, 1593, 1795, 2079
BshNI GGYRCC 2 cut(s) 945, 1476
BsiHKAI GWGCWC 2 cut(s) 1220, 1702
BsiHKCI CYCGRG 2 cut(s) 509, 1484
BslFI GGGAC 6 cut(s) 1357, 1480, 1688, 2120, 2288, 2364
BslI CCNNNNNNNGG 7 cut(s) 329, 425, 460, 694, 1988, 2143, 2395
BsmAI GTCTC 4 cut(s) 28, 324, 1797, 2264
BsmBI CGTCTC 2 cut(s) 28, 2264
BsmFI GGGAC 6 cut(s) 1357, 1480, 1688, 2120, 2288, 2364
BsmI GAATGC 1 cut(s) 2035
BsnI GGCC 6 cut(s) 147, 571, 1311, 1593, 1795, 2079
Bso31I GGTCTC 1 cut(s) 324
BsoBI CYCGRG 2 cut(s) 509, 1484
Bsp1286I GDGCHC 6 cut(s) 616, 811, 1220, 1479, 1702, 1739
Bsp13I TCCGGA 2 cut(s) 687, 1298
Bsp1407I TGTACA 1 cut(s) 793
Bsp19I CCATGG 3 cut(s) 1263, 1790, 2251
BspANI GGCC 6 cut(s) 147, 571, 1311, 1593, 1795, 2079
BspCNI CTCAG 5 cut(s) 628, 1204, 1489, 1636, 1702
BspEI TCCGGA 2 cut(s) 687, 1298
BspFNI CGCG 2 cut(s) 1109, 1989
BspMI ACCTGC 1 cut(s) 650
BspT107I GGYRCC 2 cut(s) 945, 1476
BspTNI GGTCTC 1 cut(s) 324
BsrFI RCCGGY 3 cut(s) 388, 906, 1397
BsrGI TGTACA 1 cut(s) 793
BsrI ACTGG 5 cut(s) 119, 556, 647, 1660, 2290
BssAI RCCGGY 3 cut(s) 388, 906, 1397
BssNI GRCGYC 3 cut(s) 946, 1131, 2257
BssSI CACGAG 1 cut(s) 1346
BssT1I CCWWGG 3 cut(s) 1263, 1790, 2251
Bst2BI CACGAG 1 cut(s) 1346
Bst2UI CCWGG 8 cut(s) 274, 491, 836, 1291, 1606, 1721, 1800, 2348
Bst4CI ACNGT 4 cut(s) 403, 1381, 1629, 1995
Bst6I CTCTTC 3 cut(s) 330, 438, 1263
BstACI GRCGYC 3 cut(s) 946, 1131, 2257
BstAUI TGTACA 1 cut(s) 793
BstBAI YACGTR 3 cut(s) 862, 1760, 2216
BstC8I GCNNGC 2 cut(s) 229, 1436
BstDEI CTNAG 6 cut(s) 615, 911, 1212, 1497, 1644, 1689
BstDSI CCRYGG 4 cut(s) 1263, 1790, 1987, 2251
BstEII GGTNACC 1 cut(s) 2246
BstF5I GGATG 7 cut(s) 381, 1160, 1568, 1906, 2036, 2062, 2078
BstFNI CGCG 2 cut(s) 1109, 1989
BstH2I RGCGCY 3 cut(s) 210, 949, 1696
BstHHI GCGC 6 cut(s) 209, 948, 1109, 1160, 1695, 2226
BstMAI GTCTC 4 cut(s) 28, 324, 1797, 2264
BstMWI GCNNNNNNNGC 6 cut(s) 215, 224, 344, 555, 1073, 1871
BstNI CCWGG 8 cut(s) 274, 491, 836, 1291, 1606, 1721, 1800, 2348
BstNSI RCATGY 1 cut(s) 1772
BstPI GGTNACC 1 cut(s) 2246
BstSLI GKGCMC 2 cut(s) 1479, 1739
BstUI CGCG 2 cut(s) 1109, 1989
BstV2I GAAGAC 1 cut(s) 163
BstX2I RGATCY 7 cut(s) 286, 428, 684, 697, 726, 733, 914
BstXI CCANNNNNNTGG 2 cut(s) 681, 1901
BstYI RGATCY 7 cut(s) 286, 428, 684, 697, 726, 733, 914
BsuI GTATCC 2 cut(s) 1279, 1948
BsuRI GGCC 6 cut(s) 147, 571, 1311, 1593, 1795, 2079
BtgI CCRYGG 4 cut(s) 1263, 1790, 1987, 2251
BtgZI GCGATG 1 cut(s) 348
BtsCI GGATG 7 cut(s) 381, 1160, 1568, 1906, 2036, 2062, 2078
BtsI GCAGTG 1 cut(s) 187
BtsIMutI CAGTG 6 cut(s) 187, 549, 640, 1634, 1653, 2337
BveI ACCTGC 1 cut(s) 650
Cac8I GCNNGC 2 cut(s) 229, 1436
CfoI GCGC 6 cut(s) 209, 948, 1109, 1160, 1695, 2226
Cfr10I RCCGGY 3 cut(s) 388, 906, 1397
Cfr13I GGNCC 6 cut(s) 463, 668, 838, 1342, 2077, 2134
Cfr42I CCGCGG 1 cut(s) 1990
CseI GACGC 2 cut(s) 1098, 1139
Csp6I GTAC 6 cut(s) 246, 415, 794, 859, 1829, 1835
CviQI GTAC 6 cut(s) 246, 415, 794, 859, 1829, 1835
DdeI CTNAG 6 cut(s) 615, 911, 1212, 1497, 1644, 1689
DinI GGCGCC 1 cut(s) 947
DraI TTTAAA 1 cut(s) 1537
DraIII CACNNNGTG 1 cut(s) 1747
DrdI GACNNNNNNGTC 1 cut(s) 1998
DriI GACNNNNNGTC 1 cut(s) 1782
DseDI GACNNNNNNGTC 1 cut(s) 1998
EaeI YGGCCR 2 cut(s) 569, 1309
Eam1104I CTCTTC 3 cut(s) 330, 438, 1263
Eam1105I GACNNNNNGTC 1 cut(s) 1782
EarI CTCTTC 3 cut(s) 330, 438, 1263
Eco130I CCWWGG 3 cut(s) 1263, 1790, 2251
Eco24I GRGCYC 2 cut(s) 616, 811
Eco31I GGTCTC 1 cut(s) 324
Eco32I GATATC 2 cut(s) 35, 2170
Eco47I GGWCC 5 cut(s) 463, 668, 838, 1342, 2134
Eco47III AGCGCT 2 cut(s) 208, 1694
Eco57I CTGAAG 2 cut(s) 363, 2361
Eco72I CACGTG 2 cut(s) 1760, 2216
Eco88I CYCGRG 2 cut(s) 509, 1484
Eco91I GGTNACC 1 cut(s) 2246
EcoO109I RGGNCCY 3 cut(s) 463, 838, 1342
EcoO65I GGTNACC 1 cut(s) 2246
EcoRII CCWGG 8 cut(s) 272, 489, 834, 1289, 1604, 1719, 1798, 2346
EcoRV GATATC 2 cut(s) 35, 2170
EcoT14I CCWWGG 3 cut(s) 1263, 1790, 2251
EcoT38I GRGCYC 2 cut(s) 616, 811
EgeI GGCGCC 1 cut(s) 947
EheI GGCGCC 1 cut(s) 947
ErhI CCWWGG 3 cut(s) 1263, 1790, 2251
Esp3I CGTCTC 2 cut(s) 28, 2264
FaqI GGGAC 6 cut(s) 1357, 1480, 1688, 2120, 2288, 2364
FauI CCCGC 1 cut(s) 2145
FbaI TGATCA 1 cut(s) 1585
FblI GTMKAC 1 cut(s) 2095
FokI GGATG 7 cut(s) 368, 1147, 1575, 1913, 2043, 2069, 2085
FriOI GRGCYC 2 cut(s) 616, 811
FspAI RTGCGCAY 1 cut(s) 1159
FspBI CTAG 4 cut(s) 48, 423, 1367, 1509
FspI TGCGCA 1 cut(s) 1159
GlaI GCGC 6 cut(s) 208, 947, 1108, 1159, 1694, 2225
GsaI CCCAGC 6 cut(s) 216, 444, 591, 634, 1734, 2163
GsuI CTGGAG 4 cut(s) 102, 1821, 2046, 2400
HaeII RGCGCY 3 cut(s) 210, 949, 1696
HaeIII GGCC 6 cut(s) 147, 571, 1311, 1593, 1795, 2079
HgaI GACGC 2 cut(s) 1098, 1139
HhaI GCGC 6 cut(s) 209, 948, 1109, 1160, 1695, 2226
Hin1I GRCGYC 3 cut(s) 946, 1131, 2257
Hin6I GCGC 6 cut(s) 207, 946, 1107, 1158, 1693, 2224
HinP1I GCGC 6 cut(s) 207, 946, 1107, 1158, 1693, 2224
HincII GTYRAC 3 cut(s) 7, 1787, 2291
HindII GTYRAC 3 cut(s) 7, 1787, 2291
HindIII AAGCTT 1 cut(s) 1856
HpaI GTTAAC 1 cut(s) 7
HphI GGTGA 6 cut(s) 278, 317, 1279, 1351, 1864, 2258
Hpy166II GTNNAC 7 cut(s) 7, 743, 1443, 1661, 1787, 2096, 2291
Hpy188III TCNNGA 7 cut(s) 688, 1058, 1299, 1324, 1484, 1844, 2379
Hpy8I GTNNAC 7 cut(s) 7, 743, 1443, 1661, 1787, 2096, 2291
Hpy99I CGWCG 4 cut(s) 403, 476, 479, 1133
HpyAV CCTTC 4 cut(s) 945, 1757, 2265, 2269
HpyCH4III ACNGT 4 cut(s) 403, 1381, 1629, 1995
HpyCH4IV ACGT 9 cut(s) 165, 477, 861, 1062, 1332, 1503, 1759, 2215, 2257
HpyCH4V TGCA 7 cut(s) 185, 367, 714, 761, 1028, 1865, 2207
HpyF10VI GCNNNNNNNGC 6 cut(s) 215, 224, 344, 555, 1073, 1871
HpyF3I CTNAG 6 cut(s) 615, 911, 1212, 1497, 1644, 1689
HpySE526I ACGT 9 cut(s) 165, 477, 861, 1062, 1332, 1503, 1759, 2215, 2257
Hsp92I GRCGYC 3 cut(s) 946, 1131, 2257
HspAI GCGC 6 cut(s) 207, 946, 1107, 1158, 1693, 2224
KasI GGCGCC 1 cut(s) 945
Kpn2I TCCGGA 2 cut(s) 687, 1298
Ksp22I TGATCA 1 cut(s) 1585
KspAI GTTAAC 1 cut(s) 7
KspI CCGCGG 1 cut(s) 1990
LmnI GCTCC 4 cut(s) 1223, 1326, 1391, 1705
LweI GCATC 4 cut(s) 194, 325, 1169, 1837
MaeI CTAG 4 cut(s) 48, 423, 1367, 1509
MaeII ACGT 9 cut(s) 165, 477, 861, 1062, 1332, 1503, 1759, 2215, 2257
MaeIII GTNAC 6 cut(s) 102, 1357, 1649, 1922, 2246, 2278
MboII GAAGA 9 cut(s) 33, 163, 309, 317, 425, 473, 1250, 1316, 1439
MfeI CAATTG 2 cut(s) 1101, 1313
MflI RGATCY 7 cut(s) 286, 428, 684, 697, 726, 733, 914
MhlI GDGCHC 6 cut(s) 616, 811, 1220, 1479, 1702, 1739
MlsI TGGCCA 2 cut(s) 571, 1311
MluCI AATT 8 cut(s) 234, 965, 1011, 1101, 1313, 1531, 1815, 1882
MluNI TGGCCA 2 cut(s) 571, 1311
Mly113I GGCGCC 1 cut(s) 946
MlyI GAGTC 3 cut(s) 459, 988, 1379
MmeI TCCRAC 3 cut(s) 427, 956, 1433
Mox20I TGGCCA 2 cut(s) 571, 1311
MroI TCCGGA 2 cut(s) 687, 1298
MscI TGGCCA 2 cut(s) 571, 1311
MseI TTAA 5 cut(s) 6, 1082, 1518, 1536, 2210
MslI CAYNNNNRTG 3 cut(s) 801, 886, 1599
Msp20I TGGCCA 2 cut(s) 571, 1311
MspA1I CMGCKG 1 cut(s) 1989
MunI CAATTG 2 cut(s) 1101, 1313
Mva1269I GAATGC 1 cut(s) 2035
MvaI CCWGG 8 cut(s) 274, 491, 836, 1291, 1606, 1721, 1800, 2348
MvnI CGCG 2 cut(s) 1109, 1989
MwoI GCNNNNNNNGC 6 cut(s) 215, 224, 344, 555, 1073, 1871
NarI GGCGCC 1 cut(s) 946
NciI CCSGG 6 cut(s) 291, 330, 455, 702, 738, 1094
NcoI CCATGG 3 cut(s) 1263, 1790, 2251
NmeAIII GCCGAG 1 cut(s) 2105
NmuCI GTSAC 3 cut(s) 1357, 1649, 2246
NsbI TGCGCA 1 cut(s) 1159
NspI RCATGY 1 cut(s) 1772
PasI CCCWGGG 1 cut(s) 2347
PcsI WCGNNNNNNNCGW 1 cut(s) 1329
PctI GAATGC 1 cut(s) 2035
PfeI GAWTC 8 cut(s) 269, 355, 592, 1320, 1456, 1684, 2423, 2432
PflFI GACNNNGTC 1 cut(s) 1133
PflMI CCANNNNNTGG 1 cut(s) 2395
PfoI TCCNGGA 2 cut(s) 834, 1798
PleI GAGTC 3 cut(s) 458, 987, 1378
PluTI GGCGCC 1 cut(s) 949
PmaCI CACGTG 2 cut(s) 1760, 2216
PmlI CACGTG 2 cut(s) 1760, 2216
PpsI GAGTC 3 cut(s) 458, 987, 1378
Ppu21I YACGTR 3 cut(s) 862, 1760, 2216
PpuMI RGGWCCY 3 cut(s) 463, 838, 1342
Psp5II RGGWCCY 3 cut(s) 463, 838, 1342
Psp6I CCWGG 8 cut(s) 272, 489, 834, 1289, 1604, 1719, 1798, 2346
PspCI CACGTG 2 cut(s) 1760, 2216
PspEI GGTNACC 1 cut(s) 2246
PspFI CCCAGC 6 cut(s) 212, 440, 587, 630, 1730, 2159
PspGI CCWGG 8 cut(s) 272, 489, 834, 1289, 1604, 1719, 1798, 2346
PspPI GGNCC 6 cut(s) 463, 668, 838, 1342, 2077, 2134
PspPPI RGGWCCY 3 cut(s) 463, 838, 1342
PsrI GAACNNNNNNTAC 2 cut(s) 1939, 1971
PsuI RGATCY 7 cut(s) 286, 428, 684, 697, 726, 733, 914
PsyI GACNNNGTC 1 cut(s) 1133
RsaI GTAC 6 cut(s) 247, 416, 795, 860, 1830, 1836
RsaNI GTAC 6 cut(s) 246, 415, 794, 859, 1829, 1835
RseI CAYNNNNRTG 3 cut(s) 801, 886, 1599
SacII CCGCGG 1 cut(s) 1990
SaqAI TTAA 5 cut(s) 6, 1082, 1518, 1536, 2210
Sau96I GGNCC 6 cut(s) 463, 668, 838, 1342, 2077, 2134
SchI GAGTC 3 cut(s) 459, 988, 1379
SduI GDGCHC 6 cut(s) 616, 811, 1220, 1479, 1702, 1739
SfaNI GCATC 4 cut(s) 194, 325, 1169, 1837
SfoI GGCGCC 1 cut(s) 947
Sfr303I CCGCGG 1 cut(s) 1990
SgrBI CCGCGG 1 cut(s) 1990
SinI GGWCC 5 cut(s) 463, 668, 838, 1342, 2134
SmiMI CAYNNNNRTG 3 cut(s) 801, 886, 1599
SpeI ACTAGT 1 cut(s) 422
Sse9I AATT 8 cut(s) 234, 965, 1011, 1101, 1313, 1531, 1815, 1882
SspDI GGCGCC 1 cut(s) 945
SspMI CTAG 4 cut(s) 48, 423, 1367, 1509
StyI CCWWGG 3 cut(s) 1263, 1790, 2251
TaaI ACNGT 4 cut(s) 403, 1381, 1629, 1995
TaiI ACGT 9 cut(s) 168, 480, 864, 1065, 1335, 1506, 1762, 2218, 2260
TaqI TCGA 3 cut(s) 398, 2242, 2406
TasI AATT 8 cut(s) 234, 965, 1011, 1101, 1313, 1531, 1815, 1882
TatI WGTACW 2 cut(s) 793, 1834
TauI GCSGC 1 cut(s) 558
TfiI GAWTC 8 cut(s) 269, 355, 592, 1320, 1456, 1684, 2423, 2432
Tru1I TTAA 5 cut(s) 6, 1082, 1518, 1536, 2210
Tru9I TTAA 5 cut(s) 6, 1082, 1518, 1536, 2210
TscAI CASTG 6 cut(s) 187, 556, 647, 1634, 1660, 2344
TseFI GTSAC 3 cut(s) 1357, 1649, 2246
Tsp45I GTSAC 3 cut(s) 1357, 1649, 2246
TspDTI ATGAA 5 cut(s) 142, 927, 1868, 2138, 2436
TspGWI ACGGA 4 cut(s) 10, 1022, 1378, 2066
TspRI CASTG 6 cut(s) 187, 556, 647, 1634, 1660, 2344
Tth111I GACNNNGTC 1 cut(s) 1133
Van91I CCANNNNNTGG 1 cut(s) 2395
VpaK11BI GGWCC 5 cut(s) 463, 668, 838, 1342, 2134
XapI RAATTY 2 cut(s) 234, 1815
XceI RCATGY 1 cut(s) 1772
XcmI CCANNNNNNNNNTGG 2 cut(s) 239, 1727
XmiI GTMKAC 1 cut(s) 2095
XspI CTAG 4 cut(s) 48, 423, 1367, 1509
ZraI GACGTC 1 cut(s) 2258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.