Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008433

Physical Location & Seq

Genomic Coordinates Reverse (-)

868258 .. 871299

Gene Structure 3042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g01100.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCATCCGATGCTGCCATTGCCACTTGGGGCTCTGGGGAAGACGGCCAATTGGGAATCGGGAACAACGAGGAGAAGGAATGGGTGTGCGCCGTCAAAGCCCTCGAGTCGCAGACTATCCGCTCTGTTGTCGCTGGCAGCCGAAACTCTCTCGCCATTTGCGATGACGGCAAGTTGTTTACATGGGGTTGGAACCAAAGAGGAACCTTAGGGCACCCTCCCGAGACCAAAACTGAGAACATTCCAAGCCAGGTTAAAGCTCTTGCTAATGTCAAGATTGTTCAGGCTGCTATTGGTGGATGGCATTGTTTGGCTGTCGATGATCAAGGCCGTGCTTACGCCTGGGGTGGGAATGAGTATGGACAGTGTGGTGAAGAACCTGAGCGGAAAGATGACACTGGTAGACCTTTGAGAAGGGATATAGCGATTCCTCAACGCTGTGCACCAAAACTTAAAGTCCGCCAGGTAGCTGCTGGGGGTACTCACTCTGTGGTACTTACACGTGATGGGCAAGTATGGACATGGGGTCAGCCATGGCCTCCTGGAGACATAAAACAAATTTCAACGCCTGTGCGTGTACAAGGTCTTGATGCAGTGAGGCTCATTGCAGTTGGGGCATTTCATAATTTGGCTCTGCAGGAGGATGGTACTTTATGGGCTTGGGGTAATAACGAATATGGACAACTGGGAACAGGGGATACTCAGCCGAGATCACAACCTATTCCTGTCCAGGGGCTATCTGATCTTAATTTGGTGGATATTGCTGCTGGAGGATGGCATTCTACTGCACTAACAGAAGATGGAGAGGTGTATGGTTGGGGACGAGGAGAACATGGAAGGCTTGGGTTTGGCGACAATGATAAAAGTAGTAAAATGGTGCCGCAAAGGGTTCATCTTTTAGTTGGGGAGGATATTGTTCAGGTGTCTTGTGGAGGCACTCACTCTGTTGCATTAACTCGTGACGGGCGAATGTATTCGTTTGGCCGAGGCGACCACGGACGCCTTGGATATGGAAGGAAGGTGACGACTGGTCAGCCGATGGAAGTTCCCATCGGCATCCCTCCCAGAAATGGCACTGCAGACAATGGACACTGGATTGCCAAACTCGTCGCTTCTGGAGGACGCCATACGTTGGCAATCGTAGATTGGAAAGCCGATGATGAACCAGAATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RCC1

Protein Analysis

392

Amino Acids

42.05

Weight (kDa)

5.9

Isoelectric Point (pI)

26.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008433)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02510 AT3G02510 AT3G02510 AT5G16040 AT5G16040
fragaria_vesca	FvH4_6g45310
malus_domestica	MD07G1096100.v1.1 MD09G1085900.v1.1 MD17G1074800.v1.1
prunus_persica	Prupe.3G239200_v2.0.a1 Prupe.3G239200_v2.0.a1
pyrus_communis	pycom09g01100 pycom17g07550
rosa_chinensis	RchiOBHm_Chr2g0163071
rosa_laevigata	RLG00000021369
rosa_multiflora	Rmu_sc0003555.1_g000021 Rmu_sc0003984.1_g000005
rosa_roxburghii	Rroxscaffold_2G00087570
rosa_rugosa	Rorug02G0500100
rosa_samantha	Rh2AG566500 Rh2BG578900 Rh2DG589200
rosa_wichuraiana	Rw2G046900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	213, 877
AccB7I	CCANNNNNTGG	1 cut(s)	1132
AccBSI	CCGCTC	2 cut(s)	123, 385
AccI	GTMKAC	1 cut(s)	403
AciI	CCGC	4 cut(s)	121, 385, 460, 881
AcoI	YGGCCR	2 cut(s)	46, 982
AcsI	RAATTY	1 cut(s)	558
AcvI	CACGTG	1 cut(s)	503
AcyI	GRCGYC	2 cut(s)	1000, 1123
AdeI	CACNNNGTG	1 cut(s)	490
AfaI	GTAC	4 cut(s)	481, 495, 579, 649
AfiI	CCNNNNNNNGG	4 cut(s)	348, 731, 1070, 1132
AflIII	ACRYGT	1 cut(s)	500
AgsI	TTSAA	1 cut(s)	564
AhdI	GACNNNNNGTC	2 cut(s)	525, 1029
AjnI	CCWGG	5 cut(s)	249, 341, 462, 541, 729
AluBI	AGCT	2 cut(s)	260, 470
AluI	AGCT	2 cut(s)	260, 470
Alw21I	GWGCWC	1 cut(s)	445
Alw26I	GTCTC	2 cut(s)	218, 540
Alw44I	GTGCAC	1 cut(s)	441
Ama87I	CYCGRG	2 cut(s)	104, 221
AoxI	GGCC	4 cut(s)	46, 328, 536, 982
ApaLI	GTGCAC	1 cut(s)	441
ApeKI	GCWGC	5 cut(s)	14, 138, 287, 470, 764
ApoI	RAATTY	1 cut(s)	558
Asp700I	GAANNNNTTC	1 cut(s)	973
AspLEI	GCGC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	383, 1033
AvaI	CYCGRG	2 cut(s)	104, 221
AxyI	CCTNAGG	1 cut(s)	208
BaeGI	GKGCMC	2 cut(s)	216, 445
BanI	GGYRCC	2 cut(s)	213, 877
BanII	GRGCYC	1 cut(s)	35
BauI	CACGAG	1 cut(s)	957
BbrPI	CACGTG	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	4 cut(s)	150, 274, 457, 751
BccI	CCATC	7 cut(s)	294, 500, 638, 768, 794, 1033, 1058
BceAI	ACGGC	4 cut(s)	61, 77, 184, 315
BciT130I	CCWGG	5 cut(s)	251, 343, 464, 543, 731
BciVI	GTATCC	1 cut(s)	691
BclI	TGATCA	1 cut(s)	322
BcoDI	GTCTC	2 cut(s)	218, 540
BfmI	CTRYAG	2 cut(s)	635, 1077
BfuI	GTATCC	1 cut(s)	691
BisI	GCNGC	6 cut(s)	15, 139, 288, 471, 765, 881
BlsI	GCNGC	6 cut(s)	16, 140, 289, 472, 766, 882
Bme1390I	CCNGG	5 cut(s)	251, 343, 464, 543, 731
BmeRI	GACNNNNNGTC	2 cut(s)	525, 1029
BmeT110I	CYCGRG	2 cut(s)	104, 221
BmiI	GGNNCC	4 cut(s)	194, 205, 215, 879
BmrFI	CCNGG	5 cut(s)	251, 343, 464, 543, 731
BmrI	ACTGGG	1 cut(s)	695
BmsI	GCATC	3 cut(s)	14, 580, 1065
BmuI	ACTGGG	1 cut(s)	695
BpiI	GAAGAC	1 cut(s)	48
BpmI	CTGGAG	3 cut(s)	564, 789, 1137
Bpu10I	CCTNAGC	1 cut(s)	381
BsaAI	YACGTR	1 cut(s)	503
BsaHI	GRCGYC	2 cut(s)	1000, 1123
BsaI	GGTCTC	1 cut(s)	218
BsaJI	CCNNGG	6 cut(s)	342, 533, 730, 985, 994, 1003
Bsc4I	CCNNNNNNNGG	4 cut(s)	348, 731, 1070, 1132
Bse1I	ACTGG	4 cut(s)	403, 690, 1033, 1097
Bse21I	CCTNAGG	1 cut(s)	208
Bse3DI	GCAATG	2 cut(s)	18, 603
BseBI	CCWGG	5 cut(s)	251, 343, 464, 543, 731
BseDI	CCNNGG	6 cut(s)	342, 533, 730, 985, 994, 1003
BseGI	GGATG	5 cut(s)	5, 305, 649, 779, 1056
BseLI	CCNNNNNNNGG	4 cut(s)	348, 731, 1070, 1132
BseMI	GCAATG	2 cut(s)	18, 603
BseMII	CTCAG	3 cut(s)	225, 372, 716
BseNI	ACTGG	4 cut(s)	403, 690, 1033, 1097
BseRI	GAGGAG	2 cut(s)	86, 840
BseSI	GKGCMC	2 cut(s)	216, 445
BseXI	GCAGC	4 cut(s)	150, 274, 457, 751
BseYI	CCCAGC	1 cut(s)	473
BsgI	GTGCAG	1 cut(s)	771
BshFI	GGCC	4 cut(s)	48, 330, 538, 984
BshNI	GGYRCC	2 cut(s)	213, 877
BsiHKAI	GWGCWC	1 cut(s)	445
BsiHKCI	CYCGRG	2 cut(s)	104, 221
BslFI	GGGAC	1 cut(s)	834
BslI	CCNNNNNNNGG	4 cut(s)	348, 731, 1070, 1132
BsmAI	GTCTC	2 cut(s)	218, 540
BsmFI	GGGAC	1 cut(s)	834
BsmI	GAATGC	1 cut(s)	778
BsnI	GGCC	4 cut(s)	48, 330, 538, 984
Bso31I	GGTCTC	1 cut(s)	218
BsoBI	CYCGRG	2 cut(s)	104, 221
Bsp1286I	GDGCHC	3 cut(s)	35, 216, 445
Bsp1407I	TGTACA	1 cut(s)	577
Bsp143I	GATC	3 cut(s)	322, 710, 742
Bsp19I	CCATGG	1 cut(s)	533
BspACI	CCGC	4 cut(s)	121, 385, 460, 881
BspANI	GGCC	4 cut(s)	48, 330, 538, 984
BspCNI	CTCAG	3 cut(s)	226, 373, 715
BspLI	GGNNCC	4 cut(s)	194, 205, 215, 879
BspMAI	CTGCAG	2 cut(s)	639, 1081
BspT107I	GGYRCC	2 cut(s)	213, 877
BspTNI	GGTCTC	1 cut(s)	218
BsrBI	CCGCTC	2 cut(s)	123, 385
BsrDI	GCAATG	2 cut(s)	18, 603
BsrGI	TGTACA	1 cut(s)	577
BsrI	ACTGG	4 cut(s)	403, 690, 1033, 1097
BssECI	CCNNGG	6 cut(s)	342, 533, 730, 985, 994, 1003
BssMI	GATC	3 cut(s)	322, 710, 742
BssNI	GRCGYC	2 cut(s)	1000, 1123
BssSI	CACGAG	1 cut(s)	957
BssT1I	CCWWGG	2 cut(s)	533, 1003
Bst2BI	CACGAG	1 cut(s)	957
Bst2UI	CCWGG	5 cut(s)	251, 343, 464, 543, 731
Bst4CI	ACNGT	1 cut(s)	366
BstACI	GRCGYC	2 cut(s)	1000, 1123
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstAUI	TGTACA	1 cut(s)	577
BstBAI	YACGTR	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	4 cut(s)	208, 234, 381, 702
BstDSI	CCRYGG	2 cut(s)	533, 994
BstF5I	GGATG	5 cut(s)	5, 305, 649, 779, 1056
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	3 cut(s)	325, 713, 745
BstMAI	GTCTC	2 cut(s)	218, 540
BstMBI	GATC	3 cut(s)	322, 710, 742
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 20, 98, 168, 614
BstNI	CCWGG	5 cut(s)	251, 343, 464, 543, 731
BstSCI	CCNGG	5 cut(s)	249, 341, 462, 541, 729
BstSFI	CTRYAG	2 cut(s)	635, 1077
BstSLI	GKGCMC	2 cut(s)	216, 445
BstV1I	GCAGC	4 cut(s)	150, 274, 457, 751
BstV2I	GAAGAC	1 cut(s)	48
Bsu36I	CCTNAGG	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	691
BsuRI	GGCC	4 cut(s)	48, 330, 538, 984
BtgI	CCRYGG	2 cut(s)	533, 994
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	5 cut(s)	5, 305, 649, 779, 1056
BtsI	GCAGTG	2 cut(s)	600, 1074
BtsIMutI	CAGTG	5 cut(s)	371, 396, 600, 1074, 1090
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	1 cut(s)	92
CseI	GACGC	2 cut(s)	1008, 1131
Csp6I	GTAC	4 cut(s)	480, 494, 578, 648
CviAII	CATG	4 cut(s)	183, 522, 534, 833
CviQI	GTAC	4 cut(s)	480, 494, 578, 648
DdeI	CTNAG	4 cut(s)	208, 234, 381, 702
DpnI	GATC	3 cut(s)	324, 712, 744
DpnII	GATC	3 cut(s)	322, 710, 742
DraIII	CACNNNGTG	1 cut(s)	490
DriI	GACNNNNNGTC	2 cut(s)	525, 1029
EaeI	YGGCCR	2 cut(s)	46, 982
Eam1105I	GACNNNNNGTC	2 cut(s)	525, 1029
EciI	GGCGGA	1 cut(s)	449
Eco130I	CCWWGG	2 cut(s)	533, 1003
Eco24I	GRGCYC	1 cut(s)	35
Eco31I	GGTCTC	1 cut(s)	218
Eco72I	CACGTG	1 cut(s)	503
Eco81I	CCTNAGG	1 cut(s)	208
Eco88I	CYCGRG	2 cut(s)	104, 221
EcoRII	CCWGG	5 cut(s)	249, 341, 462, 541, 729
EcoT14I	CCWWGG	2 cut(s)	533, 1003
EcoT38I	GRGCYC	1 cut(s)	35
ErhI	CCWWGG	2 cut(s)	533, 1003
FaeI	CATG	4 cut(s)	186, 525, 537, 836
FaqI	GGGAC	1 cut(s)	834
FatI	CATG	4 cut(s)	182, 521, 533, 832
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	403
Fnu4HI	GCNGC	6 cut(s)	15, 139, 288, 471, 765, 881
FokI	GGATG	4 cut(s)	312, 656, 786, 1043
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	6 cut(s)	15, 139, 288, 471, 765, 881
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	6 cut(s)	15, 139, 288, 471, 765, 881
GsaI	CCCAGC	1 cut(s)	477
GsuI	CTGGAG	3 cut(s)	564, 789, 1137
HaeIII	GGCC	4 cut(s)	48, 330, 538, 984
HgaI	GACGC	2 cut(s)	1008, 1131
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	2 cut(s)	1000, 1123
Hin1II	CATG	4 cut(s)	186, 525, 537, 836
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	4 cut(s)	57, 107, 427, 1169
HphI	GGTGA	2 cut(s)	383, 1033
Hpy166II	GTNNAC	4 cut(s)	180, 404, 443, 578
Hpy188I	TCNGA	2 cut(s)	10, 742
Hpy188III	TCNNGA	6 cut(s)	61, 221, 274, 587, 959, 1116
Hpy8I	GTNNAC	4 cut(s)	180, 404, 443, 578
Hpy99I	CGWCG	1 cut(s)	1112
HpyAV	CCTTC	5 cut(s)	70, 408, 831, 1008, 1012
HpyCH4III	ACNGT	1 cut(s)	366
HpyCH4IV	ACGT	2 cut(s)	502, 1130
HpyCH4V	TGCA	7 cut(s)	443, 593, 608, 637, 788, 950, 1079
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 20, 98, 168, 614
HpyF3I	CTNAG	4 cut(s)	208, 234, 381, 702
HpySE526I	ACGT	2 cut(s)	502, 1130
Hsp92I	GRCGYC	2 cut(s)	1000, 1123
Hsp92II	CATG	4 cut(s)	186, 525, 537, 836
HspAI	GCGC	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	322, 710, 742
Lsp1109I	GCAGC	4 cut(s)	150, 274, 457, 751
LweI	GCATC	3 cut(s)	14, 580, 1065
MaeII	ACGT	2 cut(s)	502, 1130
MaeIII	GTNAC	2 cut(s)	959, 1021
MalI	GATC	3 cut(s)	324, 712, 744
MbiI	CCGCTC	2 cut(s)	123, 385
MboI	GATC	3 cut(s)	322, 710, 742
MboII	GAAGA	3 cut(s)	53, 386, 809
MfeI	CAATTG	1 cut(s)	50
MhlI	GDGCHC	3 cut(s)	35, 216, 445
MluCI	AATT	4 cut(s)	50, 558, 625, 748
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	170
MroXI	GAANNNNTTC	1 cut(s)	973
MseI	TTAA	4 cut(s)	255, 453, 747, 953
MspR9I	CCNGG	5 cut(s)	251, 343, 464, 543, 731
MunI	CAATTG	1 cut(s)	50
Mva1269I	GAATGC	1 cut(s)	778
MvaI	CCWGG	5 cut(s)	251, 343, 464, 543, 731
MwoI	GCNNNNNNNGC	5 cut(s)	11, 20, 98, 168, 614
NcoI	CCATGG	1 cut(s)	533
NdeII	GATC	3 cut(s)	322, 710, 742
NlaIII	CATG	4 cut(s)	186, 525, 537, 836
NlaIV	GGNNCC	4 cut(s)	194, 205, 215, 879
NmeAIII	GCCGAG	2 cut(s)	732, 1010
NmuCI	GTSAC	2 cut(s)	959, 1021
PaeR7I	CTCGAG	1 cut(s)	104
PcsI	WCGNNNNNNNCGW	3 cut(s)	66, 159, 964
PctI	GAATGC	1 cut(s)	778
PdmI	GAANNNNTTC	1 cut(s)	973
PfeI	GAWTC	3 cut(s)	57, 427, 1169
PflMI	CCANNNNNTGG	1 cut(s)	1132
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	6 cut(s)	16, 140, 289, 472, 766, 882
PleI	GAGTC	1 cut(s)	115
PmaCI	CACGTG	1 cut(s)	503
PmlI	CACGTG	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	115
Ppu21I	YACGTR	1 cut(s)	503
Psp6I	CCWGG	5 cut(s)	249, 341, 462, 541, 729
PspCI	CACGTG	1 cut(s)	503
PspFI	CCCAGC	1 cut(s)	473
PspGI	CCWGG	5 cut(s)	249, 341, 462, 541, 729
PspN4I	GGNNCC	4 cut(s)	194, 205, 215, 879
PspXI	VCTCGAGB	1 cut(s)	104
PsrI	GAACNNNNNNTAC	2 cut(s)	682, 714
PstI	CTGCAG	2 cut(s)	639, 1081
RsaI	GTAC	4 cut(s)	481, 495, 579, 649
RsaNI	GTAC	4 cut(s)	480, 494, 578, 648
SaqAI	TTAA	4 cut(s)	255, 453, 747, 953
SatI	GCNGC	6 cut(s)	15, 139, 288, 471, 765, 881
Sau3AI	GATC	3 cut(s)	322, 710, 742
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	5 cut(s)	251, 343, 464, 543, 731
SduI	GDGCHC	3 cut(s)	35, 216, 445
SfaNI	GCATC	3 cut(s)	14, 580, 1065
SfcI	CTRYAG	2 cut(s)	635, 1077
Sfr274I	CTCGAG	1 cut(s)	104
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	4 cut(s)	50, 558, 625, 748
SsiI	CCGC	4 cut(s)	121, 385, 460, 881
StyD4I	CCNGG	5 cut(s)	249, 341, 462, 541, 729
StyI	CCWWGG	2 cut(s)	533, 1003
TaaI	ACNGT	1 cut(s)	366
TaiI	ACGT	2 cut(s)	505, 1133
TaqI	TCGA	2 cut(s)	105, 318
TasI	AATT	4 cut(s)	50, 558, 625, 748
TatI	WGTACW	1 cut(s)	577
TauI	GCSGC	1 cut(s)	883
TfiI	GAWTC	3 cut(s)	57, 427, 1169
Tru1I	TTAA	4 cut(s)	255, 453, 747, 953
Tru9I	TTAA	4 cut(s)	255, 453, 747, 953
TscAI	CASTG	5 cut(s)	371, 403, 600, 1081, 1097
TseFI	GTSAC	2 cut(s)	959, 1021
TseI	GCWGC	5 cut(s)	14, 138, 287, 470, 764
Tsp45I	GTSAC	2 cut(s)	959, 1021
TspDTI	ATGAA	3 cut(s)	611, 881, 1176
TspGWI	ACGGA	1 cut(s)	1011
TspRI	CASTG	5 cut(s)	371, 403, 600, 1081, 1097
Van91I	CCANNNNNTGG	1 cut(s)	1132
VneI	GTGCAC	1 cut(s)	441
XapI	RAATTY	1 cut(s)	558
XcmI	CCANNNNNNNNNTGG	2 cut(s)	470, 1001
XhoI	CTCGAG	1 cut(s)	104
XmiI	GTMKAC	1 cut(s)	403
XmnI	GAANNNNTTC	1 cut(s)	973

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.