Rmu_sc0003984.1_g000005

Regulator of chromosome condensation (RCC1) repeat

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003984.1
Physical Location & Seq
Forward (+)
16123 .. 20331
4209 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003984.1_g000005.1.cds

Sequence Viewer

Length: 1143 bp
atggtatccgataccgccattatcacctggggttccggagaagatggccaattgggaatcgggagcaacgtggataaggacctcgtgtgcgttgtcaccgccctagagtcccagactgttcgctccgttgtcgccggtagcagaaactctctcgccatttgtgaagatggcaagctgtttacatggggttggaatcagagagggactttggggcaccctcccgagagcaaaactgagaacgttcctagtcaagttaaagctcttgccaattttaaaatcgttcaggctgctattggtggatggcattgtttggctgttgatgatcaaggccatgcttatgcctggggtggaaatgagtatggacagtgtggtggagaacctgagcgtgacactggtaaacctttgaaaagggacatagtgattcctcagcgctgtgctcccaaacttgtagttcgccaggtagctgctgggggcactcactctgtggtgcttacacgtgaagggcatgtatggacatggggtcaaccatggcctccaggagacataaaacaaatttcaacacctgtacgagtacaaggtcttgatgcggtgaagctcattgcagtaggggcatttcataatttggctctccaagaggatggcactttatgggcatggggtaacaacgaatacggacagcttggaacaggggatacgcagccaagatcacaacccattcctgtccgcggactttccggtcttactttggtggatattgctgctggaggatggcattctactgcactaacagatgatggagaggtgtatggatggggccgaggggaacatggtagacttggttttggcgataatgataagagcagtaaaatggtccagcaaaaggtgtcttgtggaggcactcactctgctgcattaacacgtgatgggcgcattttctcgtatggtcgaggtgaccatggacgtctcggatatggaaggaaggtaacaactggtcaaccgatggaagtccccatcaaactccctcccaaaaatgtcagtgacactgaagcccagggacattggattgccaaacttattgcctctggaggtcgccatactctggcaatagtcgaatggaaatcagatgaatcaactgaatcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

380

Amino Acids

40.65

Weight (kDa)

6.46

Isoelectric Point (pI)

21.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 735
AatII GACGTC 1 cut(s) 964
AccB1I GGYRCC 1 cut(s) 213
AccB7I CCANNNNNTGG 1 cut(s) 1099
AccI GTMKAC 1 cut(s) 832
AccII CGCG 1 cut(s) 726
AccIII TCCGGA 1 cut(s) 35
AciI CCGC 5 cut(s) 15, 99, 587, 724, 726
AclI AACGTT 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 1 cut(s) 552
AcuI CTGAAG 1 cut(s) 1065
AcvI CACGTG 2 cut(s) 497, 920
AcyI GRCGYC 1 cut(s) 961
AdeI CACNNNGTG 1 cut(s) 484
AfaI GTAC 2 cut(s) 567, 573
AfeI AGCGCT 1 cut(s) 431
AfiI CCNNNNNNNGG 3 cut(s) 725, 880, 1099
AflIII ACRYGT 2 cut(s) 494, 917
AgsI TTSAA 2 cut(s) 406, 558
AhdI GACNNNNNGTC 1 cut(s) 519
AjnI CCWGG 5 cut(s) 26, 341, 456, 535, 1050
AluBI AGCT 5 cut(s) 175, 260, 464, 595, 679
AluI AGCT 5 cut(s) 175, 260, 464, 595, 679
Alw21I GWGCWC 1 cut(s) 439
Alw26I GTCTC 2 cut(s) 534, 968
Ama87I CYCGRG 1 cut(s) 221
Aor13HI TCCGGA 1 cut(s) 35
Aor51HI AGCGCT 1 cut(s) 431
AoxI GGCC 4 cut(s) 46, 328, 530, 814
ApeKI GCWGC 5 cut(s) 287, 464, 697, 758, 908
ApoI RAATTY 1 cut(s) 552
AspLEI GCGC 2 cut(s) 432, 930
AspS9I GGNCC 3 cut(s) 79, 814, 871
AsuHPI GGTGA 4 cut(s) 16, 88, 601, 962
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 2 cut(s) 79, 871
BaeGI GKGCMC 2 cut(s) 216, 476
BalI TGGCCA 1 cut(s) 48
BanI GGYRCC 1 cut(s) 213
BauI CACGAG 1 cut(s) 83
BbrPI CACGTG 2 cut(s) 497, 920
Bbv12I GWGCWC 1 cut(s) 439
BbvCI CCTCAGC 1 cut(s) 426
BbvI GCAGC 5 cut(s) 274, 451, 709, 745, 895
BciT130I CCWGG 5 cut(s) 28, 343, 458, 537, 1052
BciVI GTATCC 2 cut(s) 16, 685
BclI TGATCA 1 cut(s) 322
BcoDI GTCTC 2 cut(s) 534, 968
BfaI CTAG 2 cut(s) 104, 246
BfoI RGCGCY 1 cut(s) 433
BfuI GTATCC 2 cut(s) 16, 685
BisI GCNGC 5 cut(s) 288, 465, 698, 759, 909
BlsI GCNGC 5 cut(s) 289, 466, 699, 760, 910
Bme1390I CCNGG 5 cut(s) 28, 343, 458, 537, 1052
Bme18I GGWCC 2 cut(s) 79, 871
BmeRI GACNNNNNGTC 1 cut(s) 519
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 79, 814, 871
BmiI GGNNCC 3 cut(s) 34, 215, 815
BmrFI CCNGG 5 cut(s) 28, 343, 458, 537, 1052
BmsI GCATC 1 cut(s) 574
BpmI CTGGAG 3 cut(s) 519, 783, 1104
Bpu10I CCTNAGC 2 cut(s) 381, 426
BsaAI YACGTR 2 cut(s) 497, 920
BsaHI GRCGYC 1 cut(s) 961
BsaJI CCNNGG 8 cut(s) 27, 342, 527, 724, 817, 955, 1050, 1051
BsaWI WCCGGW 2 cut(s) 35, 734
Bsc4I CCNNNNNNNGG 3 cut(s) 725, 880, 1099
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 2 cut(s) 397, 994
Bse3DI GCAATG 1 cut(s) 597
BseAI TCCGGA 1 cut(s) 35
BseBI CCWGG 5 cut(s) 28, 343, 458, 537, 1052
BseDI CCNNGG 8 cut(s) 27, 342, 527, 724, 817, 955, 1050, 1051
BseGI GGATG 4 cut(s) 305, 643, 773, 815
BseLI CCNNNNNNNGG 3 cut(s) 725, 880, 1099
BseMI GCAATG 1 cut(s) 597
BseMII CTCAG 3 cut(s) 225, 372, 440
BseNI ACTGG 2 cut(s) 397, 994
BseSI GKGCMC 2 cut(s) 216, 476
BseXI GCAGC 5 cut(s) 274, 451, 709, 745, 895
BseYI CCCAGC 1 cut(s) 467
BsgI GTGCAG 1 cut(s) 765
Bsh1236I CGCG 1 cut(s) 726
BshFI GGCC 4 cut(s) 48, 330, 532, 816
BshNI GGYRCC 1 cut(s) 213
BsiHKAI GWGCWC 1 cut(s) 439
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 3 cut(s) 36, 135, 735
BslFI GGGAC 5 cut(s) 94, 217, 425, 992, 1068
BslI CCNNNNNNNGG 3 cut(s) 725, 880, 1099
BsmAI GTCTC 2 cut(s) 534, 968
BsmBI CGTCTC 1 cut(s) 968
BsmFI GGGAC 5 cut(s) 94, 217, 425, 992, 1068
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 4 cut(s) 48, 330, 532, 816
BsoBI CYCGRG 1 cut(s) 221
Bsp1286I GDGCHC 3 cut(s) 216, 439, 476
Bsp13I TCCGGA 1 cut(s) 35
Bsp143I GATC 2 cut(s) 322, 704
Bsp19I CCATGG 2 cut(s) 527, 955
BspACI CCGC 5 cut(s) 15, 99, 587, 724, 726
BspANI GGCC 4 cut(s) 48, 330, 532, 816
BspCNI CTCAG 3 cut(s) 226, 373, 439
BspEI TCCGGA 1 cut(s) 35
BspFNI CGCG 1 cut(s) 726
BspLI GGNNCC 3 cut(s) 34, 215, 815
BspT107I GGYRCC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 597
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 2 cut(s) 397, 994
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 8 cut(s) 27, 342, 527, 724, 817, 955, 1050, 1051
BssMI GATC 2 cut(s) 322, 704
BssNI GRCGYC 1 cut(s) 961
BssSI CACGAG 1 cut(s) 83
BssT1I CCWWGG 2 cut(s) 527, 955
Bst2BI CACGAG 1 cut(s) 83
Bst2UI CCWGG 5 cut(s) 28, 343, 458, 537, 1052
Bst4CI ACNGT 2 cut(s) 118, 366
BstACI GRCGYC 1 cut(s) 961
BstBAI YACGTR 2 cut(s) 497, 920
BstC8I GCNNGC 1 cut(s) 173
BstDEI CTNAG 3 cut(s) 234, 381, 426
BstDSI CCRYGG 3 cut(s) 527, 724, 955
BstEII GGTNACC 1 cut(s) 950
BstF5I GGATG 4 cut(s) 305, 643, 773, 815
BstFNI CGCG 1 cut(s) 726
BstH2I RGCGCY 1 cut(s) 433
BstHHI GCGC 2 cut(s) 432, 930
BstKTI GATC 2 cut(s) 325, 707
BstMAI GTCTC 2 cut(s) 534, 968
BstMBI GATC 2 cut(s) 322, 704
BstMWI GCNNNNNNNGC 1 cut(s) 608
BstNI CCWGG 5 cut(s) 28, 343, 458, 537, 1052
BstNSI RCATGY 1 cut(s) 509
BstPI GGTNACC 1 cut(s) 950
BstSCI CCNGG 5 cut(s) 26, 341, 456, 535, 1050
BstSLI GKGCMC 2 cut(s) 216, 476
BstUI CGCG 1 cut(s) 726
BstV1I GCAGC 5 cut(s) 274, 451, 709, 745, 895
BstXI CCANNNNNNTGG 1 cut(s) 638
BsuI GTATCC 2 cut(s) 16, 685
BsuRI GGCC 4 cut(s) 48, 330, 532, 816
BtgI CCRYGG 3 cut(s) 527, 724, 955
BtsCI GGATG 4 cut(s) 305, 643, 773, 815
BtsIMutI CAGTG 4 cut(s) 371, 390, 1041, 1042
Cac8I GCNNGC 1 cut(s) 173
CfoI GCGC 2 cut(s) 432, 930
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 3 cut(s) 79, 814, 871
Cfr42I CCGCGG 1 cut(s) 727
Csp6I GTAC 2 cut(s) 566, 572
CviAII CATG 8 cut(s) 183, 332, 506, 516, 528, 654, 827, 956
CviQI GTAC 2 cut(s) 566, 572
DdeI CTNAG 3 cut(s) 234, 381, 426
DpnI GATC 2 cut(s) 324, 706
DpnII GATC 2 cut(s) 322, 704
DraI TTTAAA 1 cut(s) 274
DraIII CACNNNGTG 1 cut(s) 484
DrdI GACNNNNNNGTC 1 cut(s) 735
DriI GACNNNNNGTC 1 cut(s) 519
DseDI GACNNNNNNGTC 1 cut(s) 735
EaeI YGGCCR 1 cut(s) 46
Eam1105I GACNNNNNGTC 1 cut(s) 519
Eco130I CCWWGG 2 cut(s) 527, 955
Eco47I GGWCC 2 cut(s) 79, 871
Eco47III AGCGCT 1 cut(s) 431
Eco57I CTGAAG 1 cut(s) 1065
Eco72I CACGTG 2 cut(s) 497, 920
Eco88I CYCGRG 1 cut(s) 221
Eco91I GGTNACC 1 cut(s) 950
EcoO109I RGGNCCY 1 cut(s) 79
EcoO65I GGTNACC 1 cut(s) 950
EcoRII CCWGG 5 cut(s) 26, 341, 456, 535, 1050
EcoT14I CCWWGG 2 cut(s) 527, 955
ErhI CCWWGG 2 cut(s) 527, 955
Esp3I CGTCTC 1 cut(s) 968
FaeI CATG 8 cut(s) 186, 335, 509, 519, 531, 657, 830, 959
FaqI GGGAC 5 cut(s) 94, 217, 425, 992, 1068
FatI CATG 8 cut(s) 182, 331, 505, 515, 527, 653, 826, 955
FbaI TGATCA 1 cut(s) 322
FblI GTMKAC 1 cut(s) 832
Fnu4HI GCNGC 5 cut(s) 288, 465, 698, 759, 909
FokI GGATG 4 cut(s) 312, 650, 780, 822
Fsp4HI GCNGC 5 cut(s) 288, 465, 698, 759, 909
FspBI CTAG 2 cut(s) 104, 246
GlaI GCGC 2 cut(s) 431, 929
GluI GCNGC 5 cut(s) 288, 465, 698, 759, 909
GsaI CCCAGC 1 cut(s) 471
GsuI CTGGAG 3 cut(s) 519, 783, 1104
HaeII RGCGCY 1 cut(s) 433
HaeIII GGCC 4 cut(s) 48, 330, 532, 816
HapII CCGG 3 cut(s) 36, 135, 735
HhaI GCGC 2 cut(s) 432, 930
Hin1I GRCGYC 1 cut(s) 961
Hin1II CATG 8 cut(s) 186, 335, 509, 519, 531, 657, 830, 959
Hin6I GCGC 2 cut(s) 430, 928
HinP1I GCGC 2 cut(s) 430, 928
HincII GTYRAC 2 cut(s) 524, 995
HindII GTYRAC 2 cut(s) 524, 995
HinfI GANTC 6 cut(s) 57, 107, 193, 421, 1127, 1136
HpaII CCGG 3 cut(s) 36, 135, 735
HphI GGTGA 4 cut(s) 16, 88, 601, 962
Hpy166II GTNNAC 5 cut(s) 180, 398, 524, 833, 995
Hpy188I TCNGA 4 cut(s) 10, 198, 968, 1123
Hpy188III TCNNGA 5 cut(s) 36, 61, 221, 581, 1083
Hpy8I GTNNAC 5 cut(s) 180, 398, 524, 833, 995
HpyAV CCTTC 3 cut(s) 494, 969, 973
HpyCH4III ACNGT 2 cut(s) 118, 366
HpyCH4IV ACGT 5 cut(s) 69, 240, 496, 919, 961
HpyCH4V TGCA 3 cut(s) 602, 782, 911
HpyF10VI GCNNNNNNNGC 1 cut(s) 608
HpyF3I CTNAG 3 cut(s) 234, 381, 426
HpySE526I ACGT 5 cut(s) 69, 240, 496, 919, 961
Hsp92I GRCGYC 1 cut(s) 961
Hsp92II CATG 8 cut(s) 186, 335, 509, 519, 531, 657, 830, 959
HspAI GCGC 2 cut(s) 430, 928
Kpn2I TCCGGA 1 cut(s) 35
Ksp22I TGATCA 1 cut(s) 322
KspI CCGCGG 1 cut(s) 727
Kzo9I GATC 2 cut(s) 322, 704
LmnI GCTCC 3 cut(s) 63, 128, 442
Lsp1109I GCAGC 5 cut(s) 274, 451, 709, 745, 895
LweI GCATC 1 cut(s) 574
MaeI CTAG 2 cut(s) 104, 246
MaeII ACGT 5 cut(s) 69, 240, 496, 919, 961
MaeIII GTNAC 6 cut(s) 94, 386, 659, 950, 982, 1037
MalI GATC 2 cut(s) 324, 706
MboI GATC 2 cut(s) 322, 704
MboII GAAGA 2 cut(s) 53, 176
MfeI CAATTG 1 cut(s) 50
MhlI GDGCHC 3 cut(s) 216, 439, 476
MlsI TGGCCA 1 cut(s) 48
MluCI AATT 4 cut(s) 50, 268, 552, 619
MluNI TGGCCA 1 cut(s) 48
MlyI GAGTC 1 cut(s) 116
MmeI TCCRAC 1 cut(s) 170
Mox20I TGGCCA 1 cut(s) 48
MroI TCCGGA 1 cut(s) 35
MscI TGGCCA 1 cut(s) 48
MseI TTAA 3 cut(s) 255, 273, 914
MslI CAYNNNNRTG 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 48
MspA1I CMGCKG 1 cut(s) 726
MspI CCGG 3 cut(s) 36, 135, 735
MspR9I CCNGG 5 cut(s) 28, 343, 458, 537, 1052
MunI CAATTG 1 cut(s) 50
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 5 cut(s) 28, 343, 458, 537, 1052
MvnI CGCG 1 cut(s) 726
MwoI GCNNNNNNNGC 1 cut(s) 608
NcoI CCATGG 2 cut(s) 527, 955
NdeII GATC 2 cut(s) 322, 704
NlaIII CATG 8 cut(s) 186, 335, 509, 519, 531, 657, 830, 959
NlaIV GGNNCC 3 cut(s) 34, 215, 815
NmeAIII GCCGAG 1 cut(s) 842
NmuCI GTSAC 4 cut(s) 94, 386, 950, 1037
NspI RCATGY 1 cut(s) 509
PasI CCCWGGG 1 cut(s) 1051
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PctI GAATGC 1 cut(s) 772
PfeI GAWTC 5 cut(s) 57, 193, 421, 1127, 1136
PflMI CCANNNNNTGG 1 cut(s) 1099
PfoI TCCNGGA 1 cut(s) 535
PkrI GCNGC 5 cut(s) 289, 466, 699, 760, 910
PleI GAGTC 1 cut(s) 115
PmaCI CACGTG 2 cut(s) 497, 920
PmlI CACGTG 2 cut(s) 497, 920
PpsI GAGTC 1 cut(s) 115
Ppu21I YACGTR 2 cut(s) 497, 920
PpuMI RGGWCCY 1 cut(s) 79
Psp1406I AACGTT 1 cut(s) 240
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 5 cut(s) 26, 341, 456, 535, 1050
PspCI CACGTG 2 cut(s) 497, 920
PspEI GGTNACC 1 cut(s) 950
PspFI CCCAGC 1 cut(s) 467
PspGI CCWGG 5 cut(s) 26, 341, 456, 535, 1050
PspN4I GGNNCC 3 cut(s) 34, 215, 815
PspPI GGNCC 3 cut(s) 79, 814, 871
PspPPI RGGWCCY 1 cut(s) 79
PsrI GAACNNNNNNTAC 2 cut(s) 676, 708
RsaI GTAC 2 cut(s) 567, 573
RsaNI GTAC 2 cut(s) 566, 572
RseI CAYNNNNRTG 1 cut(s) 336
SacII CCGCGG 1 cut(s) 727
SaqAI TTAA 3 cut(s) 255, 273, 914
SatI GCNGC 5 cut(s) 288, 465, 698, 759, 909
Sau3AI GATC 2 cut(s) 322, 704
Sau96I GGNCC 3 cut(s) 79, 814, 871
SchI GAGTC 1 cut(s) 116
ScrFI CCNGG 5 cut(s) 28, 343, 458, 537, 1052
SduI GDGCHC 3 cut(s) 216, 439, 476
SfaNI GCATC 1 cut(s) 574
Sfr303I CCGCGG 1 cut(s) 727
SgrBI CCGCGG 1 cut(s) 727
SinI GGWCC 2 cut(s) 79, 871
SmiMI CAYNNNNRTG 1 cut(s) 336
Sse9I AATT 4 cut(s) 50, 268, 552, 619
SsiI CCGC 5 cut(s) 15, 99, 587, 724, 726
SspMI CTAG 2 cut(s) 104, 246
StyD4I CCNGG 5 cut(s) 26, 341, 456, 535, 1050
StyI CCWWGG 2 cut(s) 527, 955
TaaI ACNGT 2 cut(s) 118, 366
TaiI ACGT 5 cut(s) 72, 243, 499, 922, 964
TaqI TCGA 2 cut(s) 946, 1110
TasI AATT 4 cut(s) 50, 268, 552, 619
TatI WGTACW 1 cut(s) 571
TfiI GAWTC 5 cut(s) 57, 193, 421, 1127, 1136
Tru1I TTAA 3 cut(s) 255, 273, 914
Tru9I TTAA 3 cut(s) 255, 273, 914
TscAI CASTG 4 cut(s) 371, 397, 1042, 1048
TseFI GTSAC 4 cut(s) 94, 386, 950, 1037
TseI GCWGC 5 cut(s) 287, 464, 697, 758, 908
Tsp45I GTSAC 4 cut(s) 94, 386, 950, 1037
TspDTI ATGAA 2 cut(s) 605, 1140
TspGWI ACGGA 2 cut(s) 115, 687
TspRI CASTG 4 cut(s) 371, 397, 1042, 1048
Van91I CCANNNNNTGG 1 cut(s) 1099
VpaK11BI GGWCC 2 cut(s) 79, 871
XapI RAATTY 1 cut(s) 552
XceI RCATGY 1 cut(s) 509
XcmI CCANNNNNNNNNTGG 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 832
XspI CTAG 2 cut(s) 104, 246
ZraI GACGTC 1 cut(s) 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.