pycom09g01110

Belongs to the 14-3-3 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0009784
Physical Location & Seq
Reverse (-)
873301 .. 875469
2169 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g01110.2

Sequence Viewer

Length: 789 bp
ATGTCGCCAACTGATTCTTCACGCGAGGAGAATGTGTACATGGCCAAGTTGGCCGAACAGGCTGAGAGATATGAGGAGATGGTCGATTTTATGGAGAAAGTTGCCAAGACTGTCGATGTTGAGGAGCTAACAGTGGAGGAAAGAAATCTCCTCTCTGTGGCTTATAAGAATGTGATTGGAGCTAGGAGAGCTTCGTGGAGGATCATATCTTCCATTGAGCAGAAGGAGGAGAGCAGAGGGAATGAGGATCATGTTGCGATTATCAAGGAGTACAGGAGCAAGATTGAGACTGAGCTCAGCAAGATCTGTGATGGGATCTTGAGCCTTCTTGAGTCGCACCTCATTCCATCTGCCTCATCCGCCGAGTCCAAGGTGTTTTACCTCAAGATGAAAGGTGATTACCACAGGTACCTTGCTGAGTTTAAGACTGGAGGCGAAAGAAAGGAAGCAGCTGAGAGCACTTTGTTGGCTTACAAGTCTGCTCAGGACATTGCCCTGGCTGAGCTGGCTCCAACCCACCCGATAAGGCTTGGACTTGCACTCAACTTCTCAGTCTTCTACTATGAAATCCTTAACTCACCAGATCGTGCTTGCAATCTGGCAAAACAGGCCTTTGATGAGGCTATTTCTGAGCTTGACACATTGGGTGAGGAATCCTACAAGGATAGCACTTTGATCATGCAGCTTCTCCGAGACAATCTGACACTCTGGACTTCCGATATCACGGATGATGCCGGGGATGAAATCAAGGAGGCATCAAAGCGCGAATCCAGTGAAGCACAGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000075 GO:0000077 GO:0000166 GO:0001505 GO:0001932 GO:0001933 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004620 GO:0004623 GO:0004857 GO:0004860 GO:0005488 GO:0005524 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005794 GO:0005829 GO:0005886 GO:0005911 GO:0006082 GO:0006469 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006587 GO:0006588 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008144 GO:0008150 GO:0008152 GO:0008426 GO:0009058 GO:0009072 GO:0009308 GO:0009506 GO:0009507 GO:0009536 GO:0009892 GO:0009893 GO:0009987 GO:0010035 GO:0010038 GO:0010468 GO:0010563 GO:0010605 GO:0012505 GO:0016020 GO:0016298 GO:0016787 GO:0016788 GO:0017076 GO:0018130 GO:0018958 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019438 GO:0019752 GO:0019887 GO:0030054 GO:0030234 GO:0030291 GO:0030312 GO:0030554 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031570 GO:0032268 GO:0032269 GO:0032553 GO:0032555 GO:0032559 GO:0032768 GO:0032770 GO:0033554 GO:0033673 GO:0034641 GO:0035639 GO:0036094 GO:0042133 GO:0042136 GO:0042221 GO:0042325 GO:0042326 GO:0042427 GO:0042428 GO:0042430 GO:0042435 GO:0043085 GO:0043086 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043549 GO:0044092 GO:0044093 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0045786 GO:0045859 GO:0045936 GO:0046189 GO:0046483 GO:0046686 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051341 GO:0051348 GO:0051353 GO:0051716 GO:0051726 GO:0052689 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071900 GO:0071901 GO:0071944 GO:0080090 GO:0097159 GO:0097164 GO:0097367 GO:0098772 GO:1901160 GO:1901162 GO:1901265 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901615 GO:1901617
KEGG Pathways
Metabolic & Signaling
ko04011 ko04110 ko04114 ko04142 ko04151 ko04390 ko04391 ko04722 ko05169 ko05203 map04011 map04110 map04114 map04142 map04151 map04390 map04391 map04722 map05169 map05203
Pfam Domains
Protein Families
14-3-3

Protein Analysis

263

Amino Acids

29.63

Weight (kDa)

4.74

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009784)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G02520 AT3G02520 AT5G16050 AT5G16050 AT5G38480 AT5G38480 AT5G38480
fragaria_vesca FvH4_6g45301
malus_domestica MD07G1096000.v1.1 MD17G1074900.v1.1 MD17G1105100.v1.1
prunus_persica Prupe.3G239000_v2.0.a1
pyrus_communis pycom09g01110
rosa_chinensis RchiOBHm_Chr2g0163061
rosa_laevigata RLG00000021368
rosa_multiflora Rmu_sc0003984.1_g000004
rosa_roxburghii Rroxscaffold_2G00087580
rosa_rugosa Rorug02G0500100
rosa_samantha Rh2AG566400 Rh2BG578800
rosa_wichuraiana Rw2G046890

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 165
Acc65I GGTACC 1 cut(s) 408
AccB1I GGYRCC 1 cut(s) 408
AccII CGCG 2 cut(s) 24, 765
AciI CCGC 1 cut(s) 360
AclWI GGATC 3 cut(s) 209, 255, 323
AcoI YGGCCR 2 cut(s) 42, 51
AfaI GTAC 3 cut(s) 38, 272, 410
AfiI CCNNNNNNNGG 1 cut(s) 157
AjnI CCWGG 1 cut(s) 495
AjuI GAANNNNNNNTTGG 1 cut(s) 33
AluBI AGCT 8 cut(s) 127, 182, 191, 295, 452, 505, 634, 685
AluI AGCT 8 cut(s) 127, 182, 191, 295, 452, 505, 634, 685
Alw21I GWGCWC 2 cut(s) 297, 461
Alw26I GTCTC 2 cut(s) 281, 687
AlwI GGATC 3 cut(s) 209, 255, 323
AoxI GGCC 3 cut(s) 42, 51, 609
ApeKI GCWGC 2 cut(s) 449, 682
Asp718I GGTACC 1 cut(s) 408
AspLEI GCGC 1 cut(s) 765
AsuC2I CCSGG 1 cut(s) 736
AsuHPI GGTGA 3 cut(s) 407, 570, 659
BalI TGGCCA 1 cut(s) 44
BanI GGYRCC 1 cut(s) 408
BanII GRGCYC 1 cut(s) 297
BbsI GAAGAC 1 cut(s) 547
Bbv12I GWGCWC 2 cut(s) 297, 461
BbvI GCAGC 2 cut(s) 461, 694
BccI CCATC 3 cut(s) 73, 305, 355
BciT130I CCWGG 1 cut(s) 497
BclI TGATCA 1 cut(s) 675
BcnI CCSGG 1 cut(s) 736
BcoDI GTCTC 2 cut(s) 281, 687
BfaI CTAG 1 cut(s) 183
BglI GCCNNNNNGGC 2 cut(s) 50, 59
BglII AGATCT 1 cut(s) 303
BisI GCNGC 2 cut(s) 450, 683
BlpI GCTNAGC 2 cut(s) 296, 501
BlsI GCNGC 2 cut(s) 451, 684
Bme1390I CCNGG 2 cut(s) 497, 736
BmiI GGNNCC 2 cut(s) 410, 510
BmrFI CCNGG 2 cut(s) 497, 736
BmsI GCATC 2 cut(s) 721, 764
BpiI GAAGAC 1 cut(s) 547
BpmI CTGGAG 1 cut(s) 450
Bpu10I CCTNAGC 1 cut(s) 483
Bpu1102I GCTNAGC 2 cut(s) 296, 501
BpuEI CTTGAG 3 cut(s) 340, 350, 368
BpuMI CCSGG 1 cut(s) 736
BsaJI CCNNGG 3 cut(s) 369, 495, 735
BsaXI ACNNNNNCTCC 2 cut(s) 20, 50
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse1I ACTGG 2 cut(s) 433, 771
Bse3DI GCAATG 1 cut(s) 489
BseBI CCWGG 1 cut(s) 497
BseDI CCNNGG 3 cut(s) 369, 495, 735
BseGI GGATG 3 cut(s) 356, 733, 745
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 489
BseMII CTCAG 9 cut(s) 54, 282, 310, 408, 444, 492, 497, 564, 621
BseNI ACTGG 2 cut(s) 433, 771
BseRI GAGGAG 5 cut(s) 41, 89, 137, 140, 242
BseXI GCAGC 2 cut(s) 461, 694
Bsh1236I CGCG 2 cut(s) 24, 765
BshFI GGCC 3 cut(s) 44, 53, 611
BshNI GGYRCC 1 cut(s) 408
BsiHKAI GWGCWC 2 cut(s) 297, 461
BsiSI CCGG 1 cut(s) 735
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 2 cut(s) 281, 687
BsnI GGCC 3 cut(s) 44, 53, 611
Bsp1286I GDGCHC 2 cut(s) 297, 461
Bsp1407I TGTACA 1 cut(s) 36
Bsp143I GATC 6 cut(s) 201, 247, 303, 315, 583, 675
Bsp1720I GCTNAGC 2 cut(s) 296, 501
BspACI CCGC 1 cut(s) 360
BspANI GGCC 3 cut(s) 44, 53, 611
BspCNI CTCAG 9 cut(s) 55, 283, 309, 409, 445, 493, 496, 563, 622
BspFNI CGCG 2 cut(s) 24, 765
BspLI GGNNCC 2 cut(s) 410, 510
BspPI GGATC 3 cut(s) 209, 255, 323
BspT107I GGYRCC 1 cut(s) 408
BsrDI GCAATG 1 cut(s) 489
BsrGI TGTACA 1 cut(s) 36
BsrI ACTGG 2 cut(s) 433, 771
BssECI CCNNGG 3 cut(s) 369, 495, 735
BssMI GATC 6 cut(s) 201, 247, 303, 315, 583, 675
BssT1I CCWWGG 1 cut(s) 369
Bst2UI CCWGG 1 cut(s) 497
Bst4CI ACNGT 2 cut(s) 112, 133
BstAUI TGTACA 1 cut(s) 36
BstC8I GCNNGC 2 cut(s) 507, 592
BstDEI CTNAG 9 cut(s) 63, 291, 296, 417, 453, 483, 501, 550, 630
BstF5I GGATG 3 cut(s) 356, 733, 745
BstFNI CGCG 2 cut(s) 24, 765
BstHHI GCGC 1 cut(s) 765
BstKTI GATC 6 cut(s) 204, 250, 306, 318, 586, 678
BstMAI GTCTC 2 cut(s) 281, 687
BstMBI GATC 6 cut(s) 201, 247, 303, 315, 583, 675
BstMWI GCNNNNNNNGC 6 cut(s) 50, 59, 188, 359, 506, 608
BstNI CCWGG 1 cut(s) 497
BstSCI CCNGG 2 cut(s) 495, 734
BstUI CGCG 2 cut(s) 24, 765
BstV1I GCAGC 2 cut(s) 461, 694
BstV2I GAAGAC 1 cut(s) 547
BstX2I RGATCY 2 cut(s) 303, 315
BstYI RGATCY 2 cut(s) 303, 315
BsuRI GGCC 3 cut(s) 44, 53, 611
BtsCI GGATG 3 cut(s) 356, 733, 745
BtsIMutI CAGTG 2 cut(s) 138, 778
Cac8I GCNNGC 2 cut(s) 507, 592
CfoI GCGC 1 cut(s) 765
Csp6I GTAC 3 cut(s) 37, 271, 409
CviAII CATG 3 cut(s) 40, 251, 679
CviQI GTAC 3 cut(s) 37, 271, 409
DdeI CTNAG 9 cut(s) 63, 291, 296, 417, 453, 483, 501, 550, 630
DpnI GATC 6 cut(s) 203, 249, 305, 317, 585, 677
DpnII GATC 6 cut(s) 201, 247, 303, 315, 583, 675
EaeI YGGCCR 2 cut(s) 42, 51
EciI GGCGGA 1 cut(s) 349
Ecl136II GAGCTC 1 cut(s) 295
Eco130I CCWWGG 1 cut(s) 369
Eco147I AGGCCT 1 cut(s) 611
Eco24I GRGCYC 1 cut(s) 297
Eco32I GATATC 1 cut(s) 721
Eco53kI GAGCTC 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 495
EcoRV GATATC 1 cut(s) 721
EcoT14I CCWWGG 1 cut(s) 369
EcoT38I GRGCYC 1 cut(s) 297
ErhI CCWWGG 1 cut(s) 369
FaeI CATG 3 cut(s) 43, 254, 682
FaiI YATR 8 cut(s) 41, 72, 92, 165, 206, 252, 564, 680
FatI CATG 3 cut(s) 39, 250, 678
FbaI TGATCA 1 cut(s) 675
Fnu4HI GCNGC 2 cut(s) 450, 683
FokI GGATG 3 cut(s) 343, 740, 752
FriOI GRGCYC 1 cut(s) 297
Fsp4HI GCNGC 2 cut(s) 450, 683
FspBI CTAG 1 cut(s) 183
GlaI GCGC 1 cut(s) 764
GluI GCNGC 2 cut(s) 450, 683
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 3 cut(s) 44, 53, 611
HapII CCGG 1 cut(s) 735
HhaI GCGC 1 cut(s) 765
Hin1II CATG 3 cut(s) 43, 254, 682
Hin6I GCGC 1 cut(s) 763
HinP1I GCGC 1 cut(s) 763
HinfI GANTC 5 cut(s) 14, 332, 365, 653, 767
HpaII CCGG 1 cut(s) 735
HphI GGTGA 3 cut(s) 407, 570, 659
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 4 cut(s) 631, 692, 702, 718
Hpy188III TCNNGA 5 cut(s) 319, 329, 385, 485, 709
Hpy8I GTNNAC 1 cut(s) 37
HpyAV CCTTC 2 cut(s) 217, 335
HpyCH4III ACNGT 2 cut(s) 112, 133
HpyCH4V TGCA 3 cut(s) 539, 594, 682
HpyF10VI GCNNNNNNNGC 6 cut(s) 50, 59, 188, 359, 506, 608
HpyF3I CTNAG 9 cut(s) 63, 291, 296, 417, 453, 483, 501, 550, 630
Hsp92II CATG 3 cut(s) 43, 254, 682
HspAI GCGC 1 cut(s) 763
KpnI GGTACC 1 cut(s) 412
Ksp22I TGATCA 1 cut(s) 675
Kzo9I GATC 6 cut(s) 201, 247, 303, 315, 583, 675
LmnI GCTCC 4 cut(s) 124, 179, 276, 514
Lsp1109I GCAGC 2 cut(s) 461, 694
LweI GCATC 2 cut(s) 721, 764
MaeI CTAG 1 cut(s) 183
MalI GATC 6 cut(s) 203, 249, 305, 317, 585, 677
MboI GATC 6 cut(s) 201, 247, 303, 315, 583, 675
MboII GAAGA 3 cut(s) 9, 201, 547
MflI RGATCY 2 cut(s) 303, 315
MhlI GDGCHC 2 cut(s) 297, 461
MlsI TGGCCA 1 cut(s) 44
MluNI TGGCCA 1 cut(s) 44
MlyI GAGTC 2 cut(s) 341, 374
MmeI TCCRAC 1 cut(s) 536
Mox20I TGGCCA 1 cut(s) 44
MscI TGGCCA 1 cut(s) 44
MseI TTAA 2 cut(s) 423, 573
Msp20I TGGCCA 1 cut(s) 44
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 1 cut(s) 735
MspR9I CCNGG 2 cut(s) 497, 736
MvaI CCWGG 1 cut(s) 497
MvnI CGCG 2 cut(s) 24, 765
MwoI GCNNNNNNNGC 6 cut(s) 50, 59, 188, 359, 506, 608
NciI CCSGG 1 cut(s) 736
NdeII GATC 6 cut(s) 201, 247, 303, 315, 583, 675
NlaIII CATG 3 cut(s) 43, 254, 682
NlaIV GGNNCC 2 cut(s) 410, 510
NmeAIII GCCGAG 1 cut(s) 388
PceI AGGCCT 1 cut(s) 611
PfeI GAWTC 3 cut(s) 14, 653, 767
PkrI GCNGC 2 cut(s) 451, 684
PleI GAGTC 2 cut(s) 340, 373
PpsI GAGTC 2 cut(s) 340, 373
PsiI TTATAA 1 cut(s) 165
Psp124BI GAGCTC 1 cut(s) 297
Psp6I CCWGG 1 cut(s) 495
PspGI CCWGG 1 cut(s) 495
PspN4I GGNNCC 2 cut(s) 410, 510
PsuI RGATCY 2 cut(s) 303, 315
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 3 cut(s) 38, 272, 410
RsaNI GTAC 3 cut(s) 37, 271, 409
SacI GAGCTC 1 cut(s) 297
SaqAI TTAA 2 cut(s) 423, 573
SatI GCNGC 2 cut(s) 450, 683
Sau3AI GATC 6 cut(s) 201, 247, 303, 315, 583, 675
SchI GAGTC 2 cut(s) 341, 374
ScrFI CCNGG 2 cut(s) 497, 736
SduI GDGCHC 2 cut(s) 297, 461
SfaNI GCATC 2 cut(s) 721, 764
SfiI GGCCNNNNNGGCC 1 cut(s) 50
SmlI CTYRAG 3 cut(s) 319, 329, 383
SmoI CTYRAG 3 cut(s) 319, 329, 383
SseBI AGGCCT 1 cut(s) 611
SsiI CCGC 1 cut(s) 360
SspMI CTAG 1 cut(s) 183
SstI GAGCTC 1 cut(s) 297
StuI AGGCCT 1 cut(s) 611
StyD4I CCNGG 2 cut(s) 495, 734
StyI CCWWGG 1 cut(s) 369
TaaI ACNGT 2 cut(s) 112, 133
TaqI TCGA 2 cut(s) 84, 114
TatI WGTACW 2 cut(s) 36, 270
TfiI GAWTC 3 cut(s) 14, 653, 767
Tru1I TTAA 2 cut(s) 423, 573
Tru9I TTAA 2 cut(s) 423, 573
TscAI CASTG 2 cut(s) 138, 778
TseI GCWGC 2 cut(s) 449, 682
TspDTI ATGAA 3 cut(s) 404, 579, 756
TspGWI ACGGA 1 cut(s) 740
TspRI CASTG 2 cut(s) 138, 778
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.