AT5G38710

Converts proline to delta-1-pyrroline-5-carboxylate

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
15501126 .. 15504269
3144 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38710.1

Sequence Viewer

Length: 1431 bp
ATGGCAAACCGTTTCCTCCGACCAAACCTCATCCACCGTTTCTCCACCGTGAGTCCCGTCGGTCCTCCGACCACCATCATCCCAGAAATCCTTTCCTTTGACCAACCAAAACCAGAAGTTGATCTAGATCTCTCCGACCAAGCTCGACTCTTTGCTTCTGTCCCAATCTCCACCCTCCTCCGCTCAACCGCAATTCTCCATGCCACGTCCATAGGCCCTATGGTCGATCTTGGCTCGTGGCTCATGAGTTCCAAGCTCATGGACACGACCGTTACACGCGATCTAGTACTCCGTATCGTGAAAGGAACGTTTTACGACCATTTCTGCGCCGGTGAAGACGCGGCTGCCGCAGCAAGGCGCGTGAGTAGCGTGTATGAGTCGACGGGACTTAAAGGTATGTTAGTGTACGGCGTAGAACACGCTGAAGACGGTGGCGCATGTGATGAAAACATTCAAAAATTCATTGAAACCGTCGAAGCTGCTAAAACCCTACCTTCGTCTCACTTAAGCTCAGTGGTGGTCAAGATCACAGCGATTTGTCCAATGAATGTCCTAAAACGGGTTAGTGATTTGCTTCGGTGGCAATACAAGAACCCTAATTTCAAACTTCCATGGAAACTCAATTCATTTCCGGTTTTCTCCGGCTTAAGTCCTCTGTACCACACAACGTCTGAACCGGAACCATTAACCGTAGAGGAAGAACGAGAGCTTGAAAAAGCTCATGAACGCCTCAAATCCGTGTGTCTTAGATGTCAAGAATCGAACGTACCGTTACTAATTGATGCCGAAGACACCATTCTCCAACCAGCAATCGATTACATGGCGTATTGGTCGGCGATTATGTTCAATTCGGATAAAGATCGACCTATAGTTTACAACACGATTCAAGCCTACTTGAAAGATGCTGGAGAGAGATTACACTTGGCTTTACGAGAGTCAGAGAAAATGAATGTTCCTATTGGGTTTAAATTGGTGAGAGGTGCTTATATGTCTAGTGAAGCTAAGTTAGCAGATTCCTTGGGTTACAAGTCACCGGTTCACGACACAATTCAAAATACACATGATTGCTACAATGACTGTATGAGTTTCCTTATGGAGAAAGCCTCAAATGGATCAGGCATTGCGGTCATTCTAGCTACGCATAACACAGACTCGGGTAAACTAGGGGCAAGAAAAGCAAGTGAGCTAGGGATCAATAAAGAAAACGGGAAGATCGAGTTTGCGCAGCTTTACGGGATGTCGGATGCGTTATCTTTTGGATTGAAAAGGGCCGGTTTCAATGTGAGTAAGTACATGCCATACGGGCCGGTTGATACTGCAATTCCATACCTTATCCGGCGGGCATATGAGAATCGGGGTATGATGTCCACAGGTGCTTTAGACCGCCAACTTATGAGGAAGGAGCTTAAGAGAAGAGTTATGGCTTGGTGA

Protein Analysis

476

Amino Acids

53.07

Weight (kDa)

7.16

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_dh PF01619 133 - 456 7.5e-66 Proline dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1224
AccBSI CCGCTC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 380
AccII CGCG 3 cut(s) 279, 341, 360
AciI CCGC 7 cut(s) 181, 189, 341, 348, 1124, 1339, 1384
AclI AACGTT 1 cut(s) 308
AclWI GGATC 2 cut(s) 1120, 1199
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 444
AfaI GTAC 5 cut(s) 288, 407, 659, 768, 1292
AfiI CCNNNNNNNGG 2 cut(s) 354, 559
AflII CTTAAG 3 cut(s) 505, 646, 1406
AgeI ACCGGT 1 cut(s) 1033
AjiI CACGTC 1 cut(s) 207
Alw26I GTCTC 1 cut(s) 504
AlwI GGATC 2 cut(s) 1120, 1199
Ama87I CYCGRG 1 cut(s) 1153
AoxI GGCC 3 cut(s) 214, 1269, 1304
ApeKI GCWGC 4 cut(s) 344, 350, 479, 1225
ApoI RAATTY 1 cut(s) 458
AsiGI ACCGGT 1 cut(s) 1033
Asp700I GAANNNNTTC 1 cut(s) 450
AspLEI GCGC 4 cut(s) 329, 360, 437, 1225
AspS9I GGNCC 4 cut(s) 62, 215, 1269, 1304
AsuHPI GGTGA 3 cut(s) 344, 985, 1023
AvaI CYCGRG 1 cut(s) 1153
AvaII GGWCC 1 cut(s) 62
BauI CACGAG 1 cut(s) 235
BbsI GAAGAC 3 cut(s) 342, 432, 795
BbvI GCAGC 4 cut(s) 331, 362, 466, 1237
BccI CCATC 1 cut(s) 83
BceAI ACGGC 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 504
BfaI CTAG 6 cut(s) 125, 284, 993, 1133, 1163, 1187
BfmI CTRYAG 1 cut(s) 867
BfrI CTTAAG 3 cut(s) 505, 646, 1406
BglI GCCNNNNNGGC 1 cut(s) 1303
BglII AGATCT 1 cut(s) 127
BisI GCNGC 6 cut(s) 342, 345, 348, 351, 480, 1226
BlsI GCNGC 6 cut(s) 343, 346, 349, 352, 481, 1227
BmcAI AGTACT 1 cut(s) 288
Bme18I GGWCC 1 cut(s) 62
BmeT110I CYCGRG 1 cut(s) 1153
BmgBI CACGTC 1 cut(s) 207
BmgT120I GGNCC 4 cut(s) 62, 215, 1269, 1304
BmiI GGNNCC 1 cut(s) 681
BmsI GCATC 3 cut(s) 772, 892, 1234
BpiI GAAGAC 3 cut(s) 342, 432, 795
BplI GAGNNNNNCTC 2 cut(s) 1088, 1120
BpmI CTGGAG 1 cut(s) 927
Bsa29I ATCGAT 1 cut(s) 813
BsaBI GATNNNNATC 2 cut(s) 126, 858
BsaJI CCNNGG 2 cut(s) 611, 1017
BsaWI WCCGGW 3 cut(s) 631, 676, 1033
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 2 cut(s) 354, 559
Bse118I RCCGGY 4 cut(s) 329, 1033, 1271, 1306
Bse3DI GCAATG 1 cut(s) 1119
Bse8I GATNNNNATC 2 cut(s) 126, 858
BseCI ATCGAT 1 cut(s) 813
BseDI CCNNGG 2 cut(s) 611, 1017
BseGI GGATG 4 cut(s) 30, 78, 1242, 1249
BseJI GATNNNNATC 2 cut(s) 126, 858
BseLI CCNNNNNNNGG 2 cut(s) 354, 559
BseMI GCAATG 1 cut(s) 1119
BseMII CTCAG 1 cut(s) 525
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 4 cut(s) 331, 362, 466, 1237
Bsh1236I CGCG 3 cut(s) 279, 341, 360
Bsh1285I CGRYCG 1 cut(s) 270
BshFI GGCC 3 cut(s) 216, 1271, 1306
BshTI ACCGGT 1 cut(s) 1033
BshVI ATCGAT 1 cut(s) 813
BsiEI CGRYCG 1 cut(s) 270
BsiHKCI CYCGRG 1 cut(s) 1153
BsiSI CCGG 8 cut(s) 330, 632, 642, 677, 1034, 1272, 1307, 1336
BslFI GGGAC 3 cut(s) 39, 146, 399
BslI CCNNNNNNNGG 2 cut(s) 354, 559
BsmAI GTCTC 1 cut(s) 504
BsmBI CGTCTC 1 cut(s) 504
BsmFI GGGAC 3 cut(s) 39, 146, 399
BsnI GGCC 3 cut(s) 216, 1271, 1306
BsoBI CYCGRG 1 cut(s) 1153
Bsp143I GATC 9 cut(s) 121, 127, 226, 280, 525, 859, 1112, 1191, 1212
Bsp19I CCATGG 1 cut(s) 611
BspACI CCGC 7 cut(s) 181, 189, 341, 348, 1124, 1339, 1384
BspANI GGCC 3 cut(s) 216, 1271, 1306
BspCNI CTCAG 1 cut(s) 524
BspDI ATCGAT 1 cut(s) 813
BspFNI CGCG 3 cut(s) 279, 341, 360
BspHI TCATGA 2 cut(s) 243, 721
BspLI GGNNCC 1 cut(s) 681
BspPI GGATC 2 cut(s) 1120, 1199
BspTI CTTAAG 3 cut(s) 505, 646, 1406
BsrBI CCGCTC 1 cut(s) 183
BsrDI GCAATG 1 cut(s) 1119
BsrFI RCCGGY 4 cut(s) 329, 1033, 1271, 1306
BssAI RCCGGY 4 cut(s) 329, 1033, 1271, 1306
BssECI CCNNGG 2 cut(s) 611, 1017
BssMI GATC 9 cut(s) 121, 127, 226, 280, 525, 859, 1112, 1191, 1212
BssSI CACGAG 1 cut(s) 235
BssT1I CCWWGG 2 cut(s) 611, 1017
Bst2BI CACGAG 1 cut(s) 235
Bst4CI ACNGT 9 cut(s) 11, 38, 49, 271, 431, 472, 691, 771, 1079
Bst6I CTCTTC 1 cut(s) 1408
BstAFI CTTAAG 3 cut(s) 505, 646, 1406
BstC8I GCNNGC 1 cut(s) 1341
BstDEI CTNAG 3 cut(s) 511, 746, 1002
BstDSI CCRYGG 1 cut(s) 611
BstF5I GGATG 4 cut(s) 30, 78, 1242, 1249
BstFNI CGCG 3 cut(s) 279, 341, 360
BstHHI GCGC 4 cut(s) 329, 360, 437, 1225
BstKTI GATC 9 cut(s) 124, 130, 229, 283, 528, 862, 1115, 1194, 1215
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 9 cut(s) 121, 127, 226, 280, 525, 859, 1112, 1191, 1212
BstMCI CGRYCG 1 cut(s) 270
BstMWI GCNNNNNNNGC 7 cut(s) 347, 350, 366, 580, 1007, 1175, 1303
BstNSI RCATGY 2 cut(s) 441, 1297
BstSFI CTRYAG 1 cut(s) 867
BstUI CGCG 3 cut(s) 279, 341, 360
BstV1I GCAGC 4 cut(s) 331, 362, 466, 1237
BstV2I GAAGAC 3 cut(s) 342, 432, 795
BstX2I RGATCY 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 259
BstYI RGATCY 1 cut(s) 127
Bsu15I ATCGAT 1 cut(s) 813
BsuRI GGCC 3 cut(s) 216, 1271, 1306
BsuTUI ATCGAT 1 cut(s) 813
BtgI CCRYGG 1 cut(s) 611
BtrI CACGTC 1 cut(s) 207
BtsCI GGATG 4 cut(s) 30, 78, 1242, 1249
BtsIMutI CAGTG 1 cut(s) 519
Cac8I GCNNGC 1 cut(s) 1341
CciI TCATGA 2 cut(s) 243, 721
CfoI GCGC 4 cut(s) 329, 360, 437, 1225
Cfr10I RCCGGY 4 cut(s) 329, 1033, 1271, 1306
Cfr13I GGNCC 4 cut(s) 62, 215, 1269, 1304
ClaI ATCGAT 1 cut(s) 813
CseI GACGC 1 cut(s) 347
Csp6I GTAC 5 cut(s) 287, 406, 658, 767, 1291
CspAI ACCGGT 1 cut(s) 1033
CviAII CATG 9 cut(s) 200, 244, 259, 438, 612, 722, 820, 1061, 1294
CviQI GTAC 5 cut(s) 287, 406, 658, 767, 1291
DdeI CTNAG 3 cut(s) 511, 746, 1002
DpnI GATC 9 cut(s) 123, 129, 228, 282, 527, 861, 1114, 1193, 1214
DpnII GATC 9 cut(s) 121, 127, 226, 280, 525, 859, 1112, 1191, 1212
DraI TTTAAA 1 cut(s) 967
Eam1104I CTCTTC 1 cut(s) 1408
EarI CTCTTC 1 cut(s) 1408
Eco130I CCWWGG 2 cut(s) 611, 1017
Eco47I GGWCC 1 cut(s) 62
Eco57I CTGAAG 1 cut(s) 444
Eco88I CYCGRG 1 cut(s) 1153
EcoO109I RGGNCCY 1 cut(s) 215
EcoT14I CCWWGG 2 cut(s) 611, 1017
ErhI CCWWGG 2 cut(s) 611, 1017
Esp3I CGTCTC 1 cut(s) 504
FaeI CATG 9 cut(s) 203, 247, 262, 441, 615, 725, 823, 1064, 1297
FaqI GGGAC 3 cut(s) 39, 146, 399
FatI CATG 9 cut(s) 199, 243, 258, 437, 611, 721, 819, 1060, 1293
FauI CCCGC 1 cut(s) 1332
FauNDI CATATG 1 cut(s) 1345
FblI GTMKAC 1 cut(s) 380
Fnu4HI GCNGC 6 cut(s) 342, 345, 348, 351, 480, 1226
FokI GGATG 4 cut(s) 17, 65, 1249, 1256
Fsp4HI GCNGC 6 cut(s) 342, 345, 348, 351, 480, 1226
FspBI CTAG 6 cut(s) 125, 284, 993, 1133, 1163, 1187
FspI TGCGCA 1 cut(s) 1224
GlaI GCGC 4 cut(s) 328, 359, 436, 1224
GluI GCNGC 6 cut(s) 342, 345, 348, 351, 480, 1226
GsuI CTGGAG 1 cut(s) 927
HaeIII GGCC 3 cut(s) 216, 1271, 1306
HapII CCGG 8 cut(s) 330, 632, 642, 677, 1034, 1272, 1307, 1336
HgaI GACGC 1 cut(s) 347
HhaI GCGC 4 cut(s) 329, 360, 437, 1225
Hin1II CATG 9 cut(s) 203, 247, 262, 441, 615, 725, 823, 1064, 1297
Hin6I GCGC 4 cut(s) 327, 358, 435, 1223
HinP1I GCGC 4 cut(s) 327, 358, 435, 1223
HincII GTYRAC 1 cut(s) 381
HindII GTYRAC 1 cut(s) 381
HinfI GANTC 9 cut(s) 52, 147, 377, 758, 883, 935, 1013, 1151, 1351
HpaII CCGG 8 cut(s) 330, 632, 642, 677, 1034, 1272, 1307, 1336
HphI GGTGA 3 cut(s) 344, 985, 1023
Hpy166II GTNNAC 6 cut(s) 381, 406, 874, 1039, 1160, 1368
Hpy188I TCNGA 7 cut(s) 20, 69, 136, 673, 853, 940, 1243
Hpy188III TCNNGA 7 cut(s) 125, 244, 298, 523, 722, 755, 1040
Hpy8I GTNNAC 6 cut(s) 381, 406, 874, 1039, 1160, 1368
Hpy99I CGWCG 3 cut(s) 62, 385, 476
HpyAV CCTTC 2 cut(s) 504, 1393
HpyCH4III ACNGT 9 cut(s) 11, 38, 49, 271, 431, 472, 691, 771, 1079
HpyCH4IV ACGT 4 cut(s) 206, 308, 668, 765
HpyCH4V TGCA 1 cut(s) 1319
HpyF10VI GCNNNNNNNGC 7 cut(s) 347, 350, 366, 580, 1007, 1175, 1303
HpyF3I CTNAG 3 cut(s) 511, 746, 1002
HpySE526I ACGT 4 cut(s) 206, 308, 668, 765
Hsp92II CATG 9 cut(s) 203, 247, 262, 441, 615, 725, 823, 1064, 1297
HspAI GCGC 4 cut(s) 327, 358, 435, 1223
Kzo9I GATC 9 cut(s) 121, 127, 226, 280, 525, 859, 1112, 1191, 1212
LmnI GCTCC 1 cut(s) 1402
Lsp1109I GCAGC 4 cut(s) 331, 362, 466, 1237
LweI GCATC 3 cut(s) 772, 892, 1234
MaeI CTAG 6 cut(s) 125, 284, 993, 1133, 1163, 1187
MaeII ACGT 4 cut(s) 206, 308, 668, 765
MaeIII GTNAC 4 cut(s) 271, 771, 1022, 1029
MalI GATC 9 cut(s) 123, 129, 228, 282, 527, 861, 1114, 1193, 1214
MbiI CCGCTC 1 cut(s) 183
MboI GATC 9 cut(s) 121, 127, 226, 280, 525, 859, 1112, 1191, 1212
MboII GAAGA 6 cut(s) 347, 437, 710, 800, 1222, 1425
MflI RGATCY 1 cut(s) 127
MluCI AATT 9 cut(s) 192, 458, 598, 622, 777, 847, 968, 1047, 1320
MlyI GAGTC 5 cut(s) 61, 141, 386, 944, 1145
MmeI TCCRAC 5 cut(s) 43, 92, 159, 826, 1221
MroXI GAANNNNTTC 1 cut(s) 450
MseI TTAA 6 cut(s) 390, 506, 647, 686, 966, 1407
MspCI CTTAAG 3 cut(s) 505, 646, 1406
MspI CCGG 8 cut(s) 330, 632, 642, 677, 1034, 1272, 1307, 1336
MvnI CGCG 3 cut(s) 279, 341, 360
MwoI GCNNNNNNNGC 7 cut(s) 347, 350, 366, 580, 1007, 1175, 1303
NcoI CCATGG 1 cut(s) 611
NdeI CATATG 1 cut(s) 1345
NdeII GATC 9 cut(s) 121, 127, 226, 280, 525, 859, 1112, 1191, 1212
NlaIII CATG 9 cut(s) 203, 247, 262, 441, 615, 725, 823, 1064, 1297
NlaIV GGNNCC 1 cut(s) 681
NmuCI GTSAC 1 cut(s) 1029
NsbI TGCGCA 1 cut(s) 1224
NspI RCATGY 2 cut(s) 441, 1297
PagI TCATGA 2 cut(s) 243, 721
PcsI WCGNNNNNNNCGW 2 cut(s) 767, 1212
PdmI GAANNNNTTC 1 cut(s) 450
PfeI GAWTC 4 cut(s) 758, 883, 1013, 1351
PinAI ACCGGT 1 cut(s) 1033
PkrI GCNGC 6 cut(s) 343, 346, 349, 352, 481, 1227
PleI GAGTC 5 cut(s) 60, 141, 385, 943, 1145
PpsI GAGTC 5 cut(s) 60, 141, 385, 943, 1145
Psp1406I AACGTT 1 cut(s) 308
PspN4I GGNNCC 1 cut(s) 681
PspPI GGNCC 4 cut(s) 62, 215, 1269, 1304
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 5 cut(s) 288, 407, 659, 768, 1292
RsaNI GTAC 5 cut(s) 287, 406, 658, 767, 1291
SalI GTCGAC 1 cut(s) 379
SaqAI TTAA 6 cut(s) 390, 506, 647, 686, 966, 1407
SatI GCNGC 6 cut(s) 342, 345, 348, 351, 480, 1226
Sau3AI GATC 9 cut(s) 121, 127, 226, 280, 525, 859, 1112, 1191, 1212
Sau96I GGNCC 4 cut(s) 62, 215, 1269, 1304
ScaI AGTACT 1 cut(s) 288
SchI GAGTC 5 cut(s) 61, 141, 386, 944, 1145
SfaNI GCATC 3 cut(s) 772, 892, 1234
SfcI CTRYAG 1 cut(s) 867
SgrAI CRCCGGYG 1 cut(s) 329
SinI GGWCC 1 cut(s) 62
SmlI CTYRAG 3 cut(s) 505, 646, 1406
SmoI CTYRAG 3 cut(s) 505, 646, 1406
Sse9I AATT 9 cut(s) 192, 458, 598, 622, 777, 847, 968, 1047, 1320
SsiI CCGC 7 cut(s) 181, 189, 341, 348, 1124, 1339, 1384
SspMI CTAG 6 cut(s) 125, 284, 993, 1133, 1163, 1187
StyI CCWWGG 2 cut(s) 611, 1017
TaaI ACNGT 9 cut(s) 11, 38, 49, 271, 431, 472, 691, 771, 1079
TaiI ACGT 4 cut(s) 209, 311, 671, 768
TaqI TCGA 8 cut(s) 145, 225, 380, 474, 761, 813, 862, 1215
TaqII GACCGA 1 cut(s) 50
TasI AATT 9 cut(s) 192, 458, 598, 622, 777, 847, 968, 1047, 1320
TatI WGTACW 2 cut(s) 286, 1290
TauI GCSGC 2 cut(s) 344, 350
TfiI GAWTC 4 cut(s) 758, 883, 1013, 1351
Tru1I TTAA 6 cut(s) 390, 506, 647, 686, 966, 1407
Tru9I TTAA 6 cut(s) 390, 506, 647, 686, 966, 1407
TscAI CASTG 1 cut(s) 519
TseFI GTSAC 1 cut(s) 1029
TseI GCWGC 4 cut(s) 344, 350, 479, 1225
Tsp45I GTSAC 1 cut(s) 1029
TspDTI ATGAA 6 cut(s) 451, 459, 560, 615, 738, 962
TspGWI ACGGA 2 cut(s) 281, 727
TspRI CASTG 1 cut(s) 519
Vha464I CTTAAG 3 cut(s) 505, 646, 1406
VpaK11BI GGWCC 1 cut(s) 62
XapI RAATTY 1 cut(s) 458
XbaI TCTAGA 1 cut(s) 124
XceI RCATGY 2 cut(s) 441, 1297
XcmI CCANNNNNNNNNTGG 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 450
XspI CTAG 6 cut(s) 125, 284, 993, 1133, 1163, 1187
ZrmI AGTACT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.