MD17G1070700.v1.1

Converts proline to delta-1-pyrroline-5-carboxylate

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
5703621 .. 5707017
3397 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1070700.v1.1.491

Sequence Viewer

Length: 1467 bp
ATGGCAAACCGTGTAATCCCAGGAGCATCAAAACTCCTGAAAAATGTCAGGCCACTTAACTCCGCCTCCTCCACCACCATATCCGCCATTTCCCAGCCAATCGGCTATGCCGAAAAAGCACCACAACCCACAGCCACCACCATCGACGCCGACCCCAGCCTTTCCAGCTTTGATGACGCGGACAAGCTCTTTGCCTCGGTCTCCACGTCGCGGCTGTTGAGGGCGGCTCTGAACCTCCATATGGTGGCGGTGGAACCGATGGTGGATGTTGGAATGTGGGTCATGCGTTCCAAGCTCATGCAGACTCCCTTGATCAAAGACGTGATCTTGGGGATGATACGGTCCACGATTTATGACCACTTTTGCGCCGGCGAAGACGCCGTCGCCGCGGGAAAGTCGGTGCTGGAGCTAAACGAAGCGGGGCTGAGAGGGATGCTGGTTTACGCTTTGGAGTACGCCGGTGACAACGAGGCATGTGACAAGAACTTGCAAGGCTTCTTAGACACCGCTGAATCCACCAAATCCCTGCCACCTTCTTCGGTGAGCTTTATCATTGTGAAAATTACTGCAATTTGCCCCACCAATCTGCTTCGGCGAGTGAGTGACTTGCTGAGATGGCAACTGCAAGATCCGTCTTTCAATCTTCCATGGAAGCGAGATACGTTTCCCATTTTCTCGGAATCGAGCCCTCTCTACCATACCCTCGAAAAGCCGGAGCCTTTGACCCCGGAAGAAGAGCGTGATCTTGAATTAGTCCACCAGAGACTACTAAAACTGTCCCAAAAGTGCGCAGAAGCCAATGTGCCTCTATCCGTCGATGCAGAGTACACTTCAATTCAACCGGCCATCGATTACTTGACCTACTCCTCTGCGATCATCTACAACAAGGATGATAACCCAATTGTTTACGGGACAATTCAAGCTTACTTGAAAGATGCAAAGGAAAGATTGTTGCTGGCAACAAAGGCTGCAGATAAGATGGGTGTTTCAATGGGGTTCAAAGTGGTCAGGGGAGCTTATATGTCAAGTGAAGGAAAATTAGCTTCTTCCTTGGGCTATAAGTCTCCTATCCACGATTGCATTGAGGACACGCACGCTTGCTACAACGACTGTGCTTCGTTCATGCTCGAGAGGATTGCAAATGGCTCTGATGCAGTTGTTCTTGCAACCCATAATGTTGAATCAGGGAGACTGGCAATGGCAAAAGCACATGAAATAGGGGTCGGGAAGGTGCACCAGAAGCTCGAATTTGCGCAACTGTACGGAATGGCAGAATCGCTCTCCTTCGGCCTGAAAAATTCAGGGTTTCAAGTAAGCAAGTACATGCCATTCGGACCGATACAGTTGGTGCTGCCGTACCTGTTAAGGAGGGCTGAAGAGAACAGGGGACTCCTATCCGCTTCATCTCAAGACAGACTACTCACAAGGGAGGAGCTGATGAGGAGACTTAAAGCCGCAATCATCTAA

Protein Analysis

489

Amino Acids

53.69

Weight (kDa)

6.19

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_dh PF01619 139 - 468 1.5e-62 Proline dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 790, 1254
AccB7I CCANNNNNTGG 1 cut(s) 244
AccII CGCG 3 cut(s) 179, 211, 389
AclWI GGATC 1 cut(s) 623
AcoI YGGCCR 1 cut(s) 843
AcsI RAATTY 2 cut(s) 1247, 1297
AcuI CTGAAG 1 cut(s) 1395
AcyI GRCGYC 2 cut(s) 147, 378
AfaI GTAC 5 cut(s) 455, 827, 1262, 1322, 1358
AfiI CCNNNNNNNGG 3 cut(s) 210, 241, 244
AjiI CACGTC 2 cut(s) 207, 322
AjnI CCWGG 1 cut(s) 19
Alw21I GWGCWC 1 cut(s) 1236
Alw26I GTCTC 5 cut(s) 205, 757, 1068, 1183, 1438
Alw44I GTGCAC 1 cut(s) 1232
AlwI GGATC 1 cut(s) 623
Ama87I CYCGRG 1 cut(s) 1127
AoxI GGCC 3 cut(s) 50, 843, 1288
ApaLI GTGCAC 1 cut(s) 1232
ApeKI GCWGC 2 cut(s) 968, 1351
ApoI RAATTY 2 cut(s) 1247, 1297
ArsI GACNNNNNNTTYG 4 cut(s) 173, 205, 366, 398
AspLEI GCGC 3 cut(s) 368, 791, 1255
AspS9I GGNCC 2 cut(s) 342, 1334
AsuC2I CCSGG 1 cut(s) 728
AsuHPI GGTGA 2 cut(s) 473, 553
AvaI CYCGRG 1 cut(s) 1127
AvaII GGWCC 2 cut(s) 342, 1334
BaeGI GKGCMC 1 cut(s) 1236
BanII GRGCYC 1 cut(s) 689
BbsI GAAGAC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 1236
BbvI GCAGC 2 cut(s) 955, 1338
BccI CCATC 5 cut(s) 149, 253, 609, 854, 973
BceAI ACGGC 2 cut(s) 365, 1339
BcgI CGANNNNNNTGC 2 cut(s) 1118, 1152
BciT130I CCWGG 1 cut(s) 21
BclI TGATCA 1 cut(s) 312
BcnI CCSGG 1 cut(s) 728
BcoDI GTCTC 5 cut(s) 205, 757, 1068, 1183, 1438
BfmI CTRYAG 1 cut(s) 969
BisI GCNGC 6 cut(s) 212, 225, 387, 969, 1352, 1455
BlsI GCNGC 6 cut(s) 213, 226, 388, 970, 1353, 1456
Bme1390I CCNGG 2 cut(s) 21, 728
Bme18I GGWCC 2 cut(s) 342, 1334
BmeT110I CYCGRG 1 cut(s) 1127
BmgBI CACGTC 2 cut(s) 207, 322
BmgT120I GGNCC 2 cut(s) 342, 1334
BmiI GGNNCC 2 cut(s) 255, 717
BmrFI CCNGG 2 cut(s) 21, 728
BmsI GCATC 5 cut(s) 35, 423, 808, 925, 1141
BpiI GAAGAC 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BpmI CTGGAG 1 cut(s) 425
BpuEI CTTGAG 1 cut(s) 1392
BpuMI CCSGG 1 cut(s) 728
Bsa29I ATCGAT 1 cut(s) 849
BsaHI GRCGYC 2 cut(s) 147, 378
BsaI GGTCTC 1 cut(s) 205
BsaJI CCNNGG 6 cut(s) 19, 195, 387, 647, 726, 1050
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 3 cut(s) 210, 241, 244
Bse118I RCCGGY 3 cut(s) 368, 458, 841
Bse1I ACTGG 1 cut(s) 1197
Bse3DI GCAATG 1 cut(s) 1203
BseBI CCWGG 1 cut(s) 21
BseCI ATCGAT 1 cut(s) 849
BseDI CCNNGG 6 cut(s) 19, 195, 387, 647, 726, 1050
BseGI GGATG 4 cut(s) 271, 339, 438, 895
BseLI CCNNNNNNNGG 3 cut(s) 210, 241, 244
BseMI GCAATG 1 cut(s) 1203
BseMII CTCAG 2 cut(s) 416, 602
BseNI ACTGG 1 cut(s) 1197
BseRI GAGGAG 4 cut(s) 58, 856, 1445, 1456
BseSI GKGCMC 1 cut(s) 1236
BseXI GCAGC 2 cut(s) 955, 1338
BseYI CCCAGC 2 cut(s) 93, 155
Bsh1236I CGCG 3 cut(s) 179, 211, 389
BshFI GGCC 3 cut(s) 52, 845, 1290
BshVI ATCGAT 1 cut(s) 849
BsiHKAI GWGCWC 1 cut(s) 1236
BsiHKCI CYCGRG 1 cut(s) 1127
BsiSI CCGG 5 cut(s) 369, 459, 713, 728, 842
BslFI GGGAC 3 cut(s) 763, 925, 1401
BslI CCNNNNNNNGG 3 cut(s) 210, 241, 244
BsmAI GTCTC 5 cut(s) 205, 757, 1068, 1183, 1438
BsmFI GGGAC 3 cut(s) 763, 925, 1401
BsnI GGCC 3 cut(s) 52, 845, 1290
Bso31I GGTCTC 1 cut(s) 205
BsoBI CYCGRG 1 cut(s) 1127
Bsp1286I GDGCHC 2 cut(s) 689, 1236
Bsp143I GATC 5 cut(s) 312, 324, 628, 742, 873
Bsp19I CCATGG 1 cut(s) 647
BspANI GGCC 3 cut(s) 52, 845, 1290
BspCNI CTCAG 2 cut(s) 417, 603
BspDI ATCGAT 1 cut(s) 849
BspFNI CGCG 3 cut(s) 179, 211, 389
BspLI GGNNCC 2 cut(s) 255, 717
BspMAI CTGCAG 1 cut(s) 973
BspPI GGATC 1 cut(s) 623
BspQI GCTCTTC 1 cut(s) 729
BspTNI GGTCTC 1 cut(s) 205
BsrDI GCAATG 1 cut(s) 1203
BsrFI RCCGGY 3 cut(s) 368, 458, 841
BsrI ACTGG 1 cut(s) 1197
BssAI RCCGGY 3 cut(s) 368, 458, 841
BssECI CCNNGG 6 cut(s) 19, 195, 387, 647, 726, 1050
BssMI GATC 5 cut(s) 312, 324, 628, 742, 873
BssNI GRCGYC 2 cut(s) 147, 378
BssT1I CCWWGG 2 cut(s) 647, 1050
Bst2UI CCWGG 1 cut(s) 21
Bst4CI ACNGT 6 cut(s) 11, 342, 777, 1112, 1260, 1344
Bst6I CTCTTC 2 cut(s) 729, 1371
BstACI GRCGYC 2 cut(s) 147, 378
BstC8I GCNNGC 4 cut(s) 370, 957, 1095, 1099
BstDEI CTNAG 3 cut(s) 425, 499, 611
BstDSI CCRYGG 2 cut(s) 387, 647
BstF5I GGATG 4 cut(s) 271, 339, 438, 895
BstFNI CGCG 3 cut(s) 179, 211, 389
BstHHI GCGC 3 cut(s) 368, 791, 1255
BstKTI GATC 5 cut(s) 315, 327, 631, 745, 876
BstMAI GTCTC 5 cut(s) 205, 757, 1068, 1183, 1438
BstMBI GATC 5 cut(s) 312, 324, 628, 742, 873
BstMWI GCNNNNNNNGC 7 cut(s) 116, 165, 292, 386, 616, 965, 1240
BstNI CCWGG 1 cut(s) 21
BstNSI RCATGY 2 cut(s) 477, 1327
BstSCI CCNGG 2 cut(s) 19, 726
BstSFI CTRYAG 1 cut(s) 969
BstSLI GKGCMC 1 cut(s) 1236
BstUI CGCG 3 cut(s) 179, 211, 389
BstV1I GCAGC 2 cut(s) 955, 1338
BstV2I GAAGAC 1 cut(s) 381
BstX2I RGATCY 1 cut(s) 628
BstYI RGATCY 1 cut(s) 628
Bsu15I ATCGAT 1 cut(s) 849
BsuRI GGCC 3 cut(s) 52, 845, 1290
BsuTUI ATCGAT 1 cut(s) 849
BtgI CCRYGG 2 cut(s) 387, 647
BtrI CACGTC 2 cut(s) 207, 322
BtsCI GGATG 4 cut(s) 271, 339, 438, 895
Cac8I GCNNGC 4 cut(s) 370, 957, 1095, 1099
CfoI GCGC 3 cut(s) 368, 791, 1255
Cfr10I RCCGGY 3 cut(s) 368, 458, 841
Cfr13I GGNCC 2 cut(s) 342, 1334
Cfr42I CCGCGG 1 cut(s) 390
ClaI ATCGAT 1 cut(s) 849
CpoI CGGWCCG 1 cut(s) 1334
CseI GACGC 3 cut(s) 155, 185, 386
Csp6I GTAC 5 cut(s) 454, 826, 1261, 1321, 1357
CspI CGGWCCG 1 cut(s) 1334
CviAII CATG 7 cut(s) 283, 298, 474, 648, 1123, 1211, 1324
CviQI GTAC 5 cut(s) 454, 826, 1261, 1321, 1357
DdeI CTNAG 3 cut(s) 425, 499, 611
DpnI GATC 5 cut(s) 314, 326, 630, 744, 875
DpnII GATC 5 cut(s) 312, 324, 628, 742, 873
EaeI YGGCCR 1 cut(s) 843
Eam1104I CTCTTC 2 cut(s) 729, 1371
EarI CTCTTC 2 cut(s) 729, 1371
EciI GGCGGA 2 cut(s) 52, 73
Eco130I CCWWGG 2 cut(s) 647, 1050
Eco24I GRGCYC 1 cut(s) 689
Eco31I GGTCTC 1 cut(s) 205
Eco47I GGWCC 2 cut(s) 342, 1334
Eco57I CTGAAG 1 cut(s) 1395
Eco88I CYCGRG 1 cut(s) 1127
EcoRII CCWGG 1 cut(s) 19
EcoT14I CCWWGG 2 cut(s) 647, 1050
EcoT38I GRGCYC 1 cut(s) 689
ErhI CCWWGG 2 cut(s) 647, 1050
FaeI CATG 7 cut(s) 286, 301, 477, 651, 1126, 1214, 1327
FaqI GGGAC 3 cut(s) 763, 925, 1401
FatI CATG 7 cut(s) 282, 297, 473, 647, 1122, 1210, 1323
FauI CCCGC 2 cut(s) 382, 412
FauNDI CATATG 1 cut(s) 240
FbaI TGATCA 1 cut(s) 312
Fnu4HI GCNGC 6 cut(s) 212, 225, 387, 969, 1352, 1455
FokI GGATG 4 cut(s) 278, 346, 445, 902
FriOI GRGCYC 1 cut(s) 689
Fsp4HI GCNGC 6 cut(s) 212, 225, 387, 969, 1352, 1455
FspI TGCGCA 2 cut(s) 790, 1254
GlaI GCGC 3 cut(s) 367, 790, 1254
GluI GCNGC 6 cut(s) 212, 225, 387, 969, 1352, 1455
GsaI CCCAGC 2 cut(s) 97, 159
GsuI CTGGAG 1 cut(s) 425
HaeIII GGCC 3 cut(s) 52, 845, 1290
HapII CCGG 5 cut(s) 369, 459, 713, 728, 842
HgaI GACGC 3 cut(s) 155, 185, 386
HhaI GCGC 3 cut(s) 368, 791, 1255
Hin1I GRCGYC 2 cut(s) 147, 378
Hin1II CATG 7 cut(s) 286, 301, 477, 651, 1126, 1214, 1327
Hin6I GCGC 3 cut(s) 366, 789, 1253
HinP1I GCGC 3 cut(s) 366, 789, 1253
HindIII AAGCTT 1 cut(s) 921
HinfI GANTC 6 cut(s) 304, 512, 680, 1181, 1274, 1389
HpaII CCGG 5 cut(s) 369, 459, 713, 728, 842
HphI GGTGA 2 cut(s) 473, 553
Hpy166II GTNNAC 6 cut(s) 345, 442, 757, 828, 907, 1234
Hpy188I TCNGA 4 cut(s) 231, 679, 1150, 1334
Hpy188III TCNNGA 5 cut(s) 37, 746, 1129, 1225, 1409
Hpy8I GTNNAC 6 cut(s) 345, 442, 757, 828, 907, 1234
Hpy99I CGWCG 4 cut(s) 149, 211, 386, 818
HpyAV CCTTC 4 cut(s) 543, 1025, 1222, 1294
HpyCH4III ACNGT 6 cut(s) 11, 342, 777, 1112, 1260, 1344
HpyCH4IV ACGT 3 cut(s) 206, 321, 662
HpyF10VI GCNNNNNNNGC 7 cut(s) 116, 165, 292, 386, 616, 965, 1240
HpyF3I CTNAG 3 cut(s) 425, 499, 611
HpySE526I ACGT 3 cut(s) 206, 321, 662
Hsp92I GRCGYC 2 cut(s) 147, 378
Hsp92II CATG 7 cut(s) 286, 301, 477, 651, 1126, 1214, 1327
HspAI GCGC 3 cut(s) 366, 789, 1253
KroI GCCGGC 1 cut(s) 368
KroNI GCCGGC 1 cut(s) 370
Ksp22I TGATCA 1 cut(s) 312
KspI CCGCGG 1 cut(s) 390
Kzo9I GATC 5 cut(s) 312, 324, 628, 742, 873
LguI GCTCTTC 1 cut(s) 729
LmnI GCTCC 5 cut(s) 23, 406, 715, 1013, 1432
Lsp1109I GCAGC 2 cut(s) 955, 1338
LweI GCATC 5 cut(s) 35, 423, 808, 925, 1141
MaeII ACGT 3 cut(s) 206, 321, 662
MaeIII GTNAC 3 cut(s) 461, 476, 602
MalI GATC 5 cut(s) 314, 326, 630, 744, 875
MboI GATC 5 cut(s) 312, 324, 628, 742, 873
MboII GAAGA 7 cut(s) 386, 528, 635, 743, 746, 1038, 1388
MfeI CAATTG 1 cut(s) 900
MflI RGATCY 1 cut(s) 628
MhlI GDGCHC 2 cut(s) 689, 1236
MluCI AATT 9 cut(s) 561, 570, 749, 834, 900, 915, 1037, 1247, 1297
MlyI GAGTC 2 cut(s) 298, 1383
MmeI TCCRAC 1 cut(s) 250
MreI CGCCGGCG 1 cut(s) 368
MroNI GCCGGC 1 cut(s) 368
MseI TTAA 3 cut(s) 57, 1364, 1449
MspA1I CMGCKG 2 cut(s) 389, 509
MspI CCGG 5 cut(s) 369, 459, 713, 728, 842
MspR9I CCNGG 2 cut(s) 21, 728
MunI CAATTG 1 cut(s) 900
MvaI CCWGG 1 cut(s) 21
MvnI CGCG 3 cut(s) 179, 211, 389
MwoI GCNNNNNNNGC 7 cut(s) 116, 165, 292, 386, 616, 965, 1240
NaeI GCCGGC 1 cut(s) 370
NciI CCSGG 1 cut(s) 728
NcoI CCATGG 1 cut(s) 647
NdeI CATATG 1 cut(s) 240
NdeII GATC 5 cut(s) 312, 324, 628, 742, 873
NgoMIV GCCGGC 1 cut(s) 368
NlaIII CATG 7 cut(s) 286, 301, 477, 651, 1126, 1214, 1327
NlaIV GGNNCC 2 cut(s) 255, 717
NmuCI GTSAC 3 cut(s) 461, 476, 602
NsbI TGCGCA 2 cut(s) 790, 1254
NspI RCATGY 2 cut(s) 477, 1327
PaeR7I CTCGAG 1 cut(s) 1127
PciSI GCTCTTC 1 cut(s) 729
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 203
PdiI GCCGGC 1 cut(s) 370
PfeI GAWTC 4 cut(s) 512, 680, 1181, 1274
PflFI GACNNNGTC 1 cut(s) 380
PflMI CCANNNNNTGG 1 cut(s) 244
PkrI GCNGC 6 cut(s) 213, 226, 388, 970, 1353, 1456
PleI GAGTC 2 cut(s) 298, 1383
PpsI GAGTC 2 cut(s) 298, 1383
Psp6I CCWGG 1 cut(s) 19
PspFI CCCAGC 2 cut(s) 93, 155
PspGI CCWGG 1 cut(s) 19
PspN4I GGNNCC 2 cut(s) 255, 717
PspPI GGNCC 2 cut(s) 342, 1334
PstI CTGCAG 1 cut(s) 973
PsuI RGATCY 1 cut(s) 628
PsyI GACNNNGTC 1 cut(s) 380
RsaI GTAC 5 cut(s) 455, 827, 1262, 1322, 1358
RsaNI GTAC 5 cut(s) 454, 826, 1261, 1321, 1357
Rsr2I CGGWCCG 1 cut(s) 1334
RsrII CGGWCCG 1 cut(s) 1334
SacII CCGCGG 1 cut(s) 390
SapI GCTCTTC 1 cut(s) 729
SaqAI TTAA 3 cut(s) 57, 1364, 1449
SatI GCNGC 6 cut(s) 212, 225, 387, 969, 1352, 1455
Sau3AI GATC 5 cut(s) 312, 324, 628, 742, 873
Sau96I GGNCC 2 cut(s) 342, 1334
SchI GAGTC 2 cut(s) 298, 1383
ScrFI CCNGG 2 cut(s) 21, 728
SduI GDGCHC 2 cut(s) 689, 1236
SfaNI GCATC 5 cut(s) 35, 423, 808, 925, 1141
SfcI CTRYAG 1 cut(s) 969
Sfr274I CTCGAG 1 cut(s) 1127
Sfr303I CCGCGG 1 cut(s) 390
SgrAI CRCCGGYG 2 cut(s) 368, 458
SgrBI CCGCGG 1 cut(s) 390
SinI GGWCC 2 cut(s) 342, 1334
SlaI CTCGAG 1 cut(s) 1127
SmlI CTYRAG 2 cut(s) 1127, 1407
SmoI CTYRAG 2 cut(s) 1127, 1407
Sse9I AATT 9 cut(s) 561, 570, 749, 834, 900, 915, 1037, 1247, 1297
StyD4I CCNGG 2 cut(s) 19, 726
StyI CCWWGG 2 cut(s) 647, 1050
TaaI ACNGT 6 cut(s) 11, 342, 777, 1112, 1260, 1344
TaiI ACGT 3 cut(s) 209, 324, 665
TaqI TCGA 7 cut(s) 144, 683, 705, 816, 849, 1128, 1245
TaqII GACCGA 2 cut(s) 187, 1351
TasI AATT 9 cut(s) 561, 570, 749, 834, 900, 915, 1037, 1247, 1297
TatI WGTACW 2 cut(s) 825, 1320
TauI GCSGC 4 cut(s) 214, 227, 389, 1457
TfiI GAWTC 4 cut(s) 512, 680, 1181, 1274
Tru1I TTAA 3 cut(s) 57, 1364, 1449
Tru9I TTAA 3 cut(s) 57, 1364, 1449
TseFI GTSAC 3 cut(s) 461, 476, 602
TseI GCWGC 2 cut(s) 968, 1351
Tsp45I GTSAC 3 cut(s) 461, 476, 602
TspDTI ATGAA 3 cut(s) 1111, 1227, 1392
TspGWI ACGGA 3 cut(s) 621, 802, 1278
Tth111I GACNNNGTC 1 cut(s) 380
Van91I CCANNNNNTGG 1 cut(s) 244
VneI GTGCAC 1 cut(s) 1232
VpaK11BI GGWCC 2 cut(s) 342, 1334
XapI RAATTY 2 cut(s) 1247, 1297
XceI RCATGY 2 cut(s) 477, 1327
XhoI CTCGAG 1 cut(s) 1127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.