Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8033526.1

Orthogroup ID

OG0008539

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 461

Gene Structure 460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8033526.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 460 bp

atggaaaaacccgaacctttaactccggaagaagagcgtgatctcgagttagtccatcagagactacaaagactatccgaaaggtgcgtagaagctaatgtccctttatcggtggatgcagagtacacatcgattcagccttccattgattacttgacatacgcttctgcaatcaagcacaataaaggtgacaacccaattgtttacggtacaatccaagcttatttgaaagatgcaaaggaaagattgttgctagcatcaaaggctgcagacaagatgggcattccgatgggtttcaaagtggtgaggggtgcttatatgtcatgtgaaagtaaaatagcttctgccttgggctatgactctcccattcacaacagcattgaggagacacacgcgtgctacaacgagtgtgcttcgtacatgcttgagagaattggaaatggctccggcgctgttgttc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004657 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006536 GO:0006560 GO:0006562 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009056 GO:0009063 GO:0009064 GO:0009065 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009987 GO:0010035 GO:0010133 GO:0016054 GO:0016491 GO:0016645 GO:0019752 GO:0036094 GO:0042221 GO:0042742 GO:0043167 GO:0043168 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0044237 GO:0044238 GO:0044248 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0046700 GO:0048037 GO:0050660 GO:0050662 GO:0050896 GO:0051704 GO:0051707 GO:0055114 GO:0071704 GO:0071949 GO:0097159 GO:0098542 GO:1901265 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00330 ko01100 ko01110 ko01130 map00330 map01100 map01110 map01130

Pfam Domains

Protein Families

Pro_dh

Protein Analysis

153

Amino Acids

16.93

Weight (kDa)

5.23

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008539)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G30775 AT3G30775 AT5G38710 AT5G38710
fragaria_vesca	FvH4_6g45730 FvH4_6g45730
malus_domestica	MD09G1080200.v1.1 MD17G1070700.v1.1 MD17G1206300.v1.1
prunus_persica	Prupe.3G243500_v2.0.a1
pyrus_communis	pycom09g00690 pycom17g07060 pycom17g20950
rosa_chinensis	RchiOBHm_Chr2g0163921
rosa_laevigata	RLG00000021425
rosa_multiflora	Rmu_co8033526.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086930
rosa_rugosa	Rorug02G0505100
rosa_samantha	Rh2AG573400 Rh2BG584100 Rh2CG555000 Rh2DG593600
rosa_wichuraiana	Rw2G047420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	395
AccIII	TCCGGA	1 cut(s)	25
AfaI	GTAC	3 cut(s)	125, 211, 419
AfiI	CCNNNNNNNGG	1 cut(s)	109
AflIII	ACRYGT	1 cut(s)	393
AgsI	TTSAA	2 cut(s)	229, 298
AleI	CACNNNNGTG	1 cut(s)	394
AluBI	AGCT	3 cut(s)	95, 221, 341
AluI	AGCT	3 cut(s)	95, 221, 341
Alw26I	GTCTC	2 cut(s)	55, 380
Ama87I	CYCGRG	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	25
ApeKI	GCWGC	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	452
AsuHPI	GGTGA	2 cut(s)	200, 316
AsuNHI	GCTAGC	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	44
BarI	GAAGNNNNNNTAC	2 cut(s)	325, 357
BbvI	GCAGC	1 cut(s)	253
BccI	CCATC	3 cut(s)	63, 271, 283
BcoDI	GTCTC	2 cut(s)	55, 380
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	267
BfoI	RGCGCY	1 cut(s)	453
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
BmeT110I	CYCGRG	1 cut(s)	44
BmiI	GGNNCC	1 cut(s)	445
BmsI	GCATC	3 cut(s)	106, 223, 266
BmtI	GCTAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	446
Bsa29I	ATCGAT	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	348
BsaWI	WCCGGW	1 cut(s)	25
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
BseAI	TCCGGA	1 cut(s)	25
BseCI	ATCGAT	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	253
Bsh1236I	CGCG	1 cut(s)	395
BshVI	ATCGAT	1 cut(s)	131
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	26, 447
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	2 cut(s)	55, 380
BsmFI	GGGAC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	282
BsoBI	CYCGRG	1 cut(s)	44
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	1 cut(s)	40
BspDI	ATCGAT	1 cut(s)	131
BspEI	TCCGGA	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	1 cut(s)	445
BspMAI	CTGCAG	1 cut(s)	271
BspOI	GCTAGC	1 cut(s)	257
BspQI	GCTCTTC	1 cut(s)	27
BssECI	CCNNGG	1 cut(s)	348
BssMI	GATC	1 cut(s)	40
BssT1I	CCWWGG	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	27
BstC8I	GCNNGC	2 cut(s)	255, 397
BstF5I	GGATG	1 cut(s)	121
BstFNI	CGCG	1 cut(s)	395
BstH2I	RGCGCY	1 cut(s)	453
BstHHI	GCGC	1 cut(s)	452
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	2 cut(s)	55, 380
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	263
BstNSI	RCATGY	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	267
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	1 cut(s)	253
Bsu15I	ATCGAT	1 cut(s)	131
BsuTUI	ATCGAT	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	255, 397
CfoI	GCGC	1 cut(s)	452
ClaI	ATCGAT	1 cut(s)	131
Csp6I	GTAC	3 cut(s)	124, 210, 418
CviAII	CATG	2 cut(s)	324, 421
CviJI	RGCY	7 cut(s)	95, 139, 221, 266, 341, 354, 444
CviKI_1	RGCY	7 cut(s)	95, 139, 221, 266, 341, 354, 444
CviQI	GTAC	3 cut(s)	124, 210, 418
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	2 cut(s)	327, 424
FaiI	YATR	6 cut(s)	160, 318, 320, 325, 357, 422
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	2 cut(s)	323, 420
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	267
FspBI	CTAG	1 cut(s)	254
GlaI	GCGC	1 cut(s)	451
GluI	GCNGC	1 cut(s)	267
HaeII	RGCGCY	1 cut(s)	453
HapII	CCGG	2 cut(s)	26, 447
HhaI	GCGC	1 cut(s)	452
Hin1II	CATG	2 cut(s)	327, 424
Hin6I	GCGC	1 cut(s)	450
HinP1I	GCGC	1 cut(s)	450
HindIII	AAGCTT	1 cut(s)	219
HinfI	GANTC	2 cut(s)	133, 359
HpaII	CCGG	2 cut(s)	26, 447
HphI	GGTGA	2 cut(s)	200, 316
Hpy166II	GTNNAC	2 cut(s)	126, 205
Hpy188I	TCNGA	3 cut(s)	60, 79, 288
Hpy188III	TCNNGA	2 cut(s)	26, 44
Hpy8I	GTNNAC	2 cut(s)	126, 205
HpyAV	CCTTC	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4V	TGCA	4 cut(s)	119, 170, 236, 269
HpyF10VI	GCNNNNNNNGC	1 cut(s)	263
Hsp92II	CATG	2 cut(s)	327, 424
HspAI	GCGC	1 cut(s)	450
Kpn2I	TCCGGA	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	40
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	449
LpnPI	CCDG	1 cut(s)	39
Lsp1109I	GCAGC	1 cut(s)	253
LweI	GCATC	3 cut(s)	106, 223, 266
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	2 cut(s)	41, 44
MfeI	CAATTG	1 cut(s)	198
MluCI	AATT	2 cut(s)	198, 432
MluI	ACGCGT	1 cut(s)	393
MlyI	GAGTC	1 cut(s)	353
MnlI	CCTC	2 cut(s)	300, 376
MroI	TCCGGA	1 cut(s)	25
MseI	TTAA	1 cut(s)	20
MslI	CAYNNNNRTG	2 cut(s)	287, 394
MspI	CCGG	2 cut(s)	26, 447
MunI	CAATTG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	282
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	263
NdeII	GATC	1 cut(s)	40
NheI	GCTAGC	1 cut(s)	253
NlaIII	CATG	2 cut(s)	327, 424
NlaIV	GGNNCC	1 cut(s)	445
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	1 cut(s)	424
OliI	CACNNNNGTG	1 cut(s)	394
PaeR7I	CTCGAG	1 cut(s)	44
PciSI	GCTCTTC	1 cut(s)	27
PctI	GAATGC	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	1 cut(s)	268
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	445
PstI	CTGCAG	1 cut(s)	271
RsaI	GTAC	3 cut(s)	125, 211, 419
RsaNI	GTAC	3 cut(s)	124, 210, 418
RseI	CAYNNNNRTG	2 cut(s)	287, 394
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	20
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	353
SetI	ASST	6 cut(s)	19, 86, 97, 190, 223, 343
SfaNI	GCATC	3 cut(s)	106, 223, 266
SfcI	CTRYAG	1 cut(s)	267
Sfr274I	CTCGAG	1 cut(s)	44
SlaI	CTCGAG	1 cut(s)	44
SmiMI	CAYNNNNRTG	2 cut(s)	287, 394
SmlI	CTYRAG	2 cut(s)	44, 425
SmoI	CTYRAG	2 cut(s)	44, 425
Sse9I	AATT	2 cut(s)	198, 432
SspMI	CTAG	1 cut(s)	254
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	1 cut(s)	209
TaqI	TCGA	2 cut(s)	45, 131
TasI	AATT	2 cut(s)	198, 432
TatI	WGTACW	1 cut(s)	123
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	1 cut(s)	20
Tru9I	TTAA	1 cut(s)	20
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	188
XceI	RCATGY	1 cut(s)	424
XhoI	CTCGAG	1 cut(s)	44
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.