AT5G39590

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013334
Physical Location & Seq
Forward (+)
15851389 .. 15853990
2602 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39590.1

Sequence Viewer

Length: 1629 bp
ATGGGTGCTTCATCTTCTACAGACGACAAAGAATCATCGGAGAAACGAGAAATCGAAAGCCTTGCTGCTTCAACCGGAGCTCTTCCTCTGCTTAAACGATCCTTCTCCAAACTCGTCGATTCTCAAACCAATACTGTTCCTTTTCAATCCTTGAAGCAAAGTTTTGGTTTGAGCTACGATACAATTACTACTGAAGGAGAGCAAAAAGTTTCAGACTTGTTTCCCAAATTGTTGGAGCATTTAGGATCATCTTTAGTAGATTTGTTCTTCGTGCCTGATAAAGAAGGATTGAGTTGGGTTGAGTTTGCTAGTGGTTATGTCAAATGTTGTGGAAGAATGTCGAATTCGATGTCTTTCAACACTTTGTTGAGAGTTTACTATGTGACAGCTAAAAATGCAGGCTTTTCTCCAAAGCTTGAGTTTGAATCTGATGAAGCTGATTGTAAGATTAACGGGTCGATTTCGGTTAGTGAATTGCTTGTGTTTCTTTGGATGTGTTGGACAATGTCTTGGGATGGTCGAAGCTCTAAAGCTGCTGAAATGAAAGGGTGTTTGTTTCTTCCGGATATTAGTCATTTGATTCTATCAGCAGTGGTGTCTTGCACTGATTCTGAATCTGGAAATAGTTTGGATGTTTGGGAGACTGATGTTTCTGGTTTAGAACTTGAACTTCCTATCGGGAAATTCTTAACGTGGGCTTTGATGACAGTTCCTTGCCTCACTGAGTGCCTTTCTCACTTTTGTAACTCGAGGCTTCAAAATGTGACAAGTGCAGAGGATGGATCTGGACCTTCAAAGTCCACTGCTGTAGATGATTCTGCGTCCAAGACAAGCGAAAACACCCTTCTAACATGTGGAAGGGCATGGGCGATTTCTTTGACGAGCAAAAGTACAATAAGCGAGGAGATTTTGAGCTCATGTTTTCCCGGCAATAGCGGTGAACCAAATGAACATCTTCTATACCGCTCATATTATCACGGGAAAGGCATGAATCGACTGTGGTCCAACGTTGAAGGGTATCATGCTCCTATACTAGTGATAATTTCTGCAAGTTGTAAAGTCGAACATGAGGCTACTTCAAGCGAGAGGAAGTGGGTCATTGGTGCAATCTTGCAGCAAGGTTTTGAGAACAGAGATGCATTTTATGGAAGCTCTGGGAACTTGTTCTCCATAAGTCCAGTCTTTCACGCATTCTCATCTTCTGGTAAGGAGAAAAACTTTGCGTATAGCCATCTGCACCCTGCTGGCGGAGTGTACGACGCACATCCCAAGCCTGTTGGAATTGGATTCGGGGGAACACTTGGAAATGAGAGAATTTTCATTGATGAAGACTTTGCTAAAATCACAGTCCGTCATCATGCAGTTGATAAAACTTACCAGTCAGGCTCTCTTTTCCCAAACCAGGGTTATTTACCAGTAGAGGCTTTGGTTCTAGATATTGAAGCATGGGGGTTAGGTGGAAACAAGGCTAGGGAAATTCAACAAAAATACCAGAAAAGAGAAGAGCTTTTCACTAACCAACGTCGAAAGATCGACTTGAAAACGTTTACGAACTGGGAAGATTCACCTGAGAAAATGATGATGGATATGATGGGTAATCCTAATGCTCCTAGAAAGGAAGAGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

542

Amino Acids

59.91

Weight (kDa)

5.38

Isoelectric Point (pI)

45.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 303 - 486 2.3e-27 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39590
fragaria_vesca FvH4_2g38790 FvH4_2g38790
malus_domestica MD09G1232000.v1.1
prunus_persica Prupe.1G368700_v2.0.a1
pyrus_communis pycom09g15130
rosa_chinensis RchiOBHm_Chr6g0302501
rosa_laevigata RLG00000011167
rosa_multiflora Rmu_sc0011021.1_g000010 Rmu_sc0018485.1_g000004 Rmu_sc0042878.1_g000001
rosa_roxburghii Rroxscaffold_7G00165710
rosa_rugosa Rorug06G0314600
rosa_samantha Rh6AG427800 Rh6BG474900 Rh6CG439900 Rh6DG426900
rosa_wichuraiana Rw6G037000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 966
AccIII TCCGGA 1 cut(s) 562
AciI CCGC 3 cut(s) 936, 964, 1248
AclI AACGTT 2 cut(s) 1008, 1544
AclWI GGATC 3 cut(s) 93, 253, 790
AcsI RAATTY 4 cut(s) 343, 683, 1314, 1476
AcuI CTGAAG 1 cut(s) 213
AdeI CACNNNGTG 1 cut(s) 726
AfaI GTAC 2 cut(s) 892, 1256
AfiI CCNNNNNNNGG 3 cut(s) 1247, 1402, 1403
AflIII ACRYGT 1 cut(s) 851
AhlI ACTAGT 1 cut(s) 1033
AjnI CCWGG 1 cut(s) 1401
AloI GAACNNNNNNTCC 2 cut(s) 1151, 1183
Alw21I GWGCWC 2 cut(s) 82, 917
Alw26I GTCTC 1 cut(s) 635
AlwI GGATC 3 cut(s) 93, 253, 790
Ama87I CYCGRG 1 cut(s) 748
Aor13HI TCCGGA 1 cut(s) 562
ApeKI GCWGC 3 cut(s) 65, 533, 1114
ApoI RAATTY 4 cut(s) 343, 683, 1314, 1476
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
Asp700I GAANNNNTTC 2 cut(s) 954, 1163
AspS9I GGNCC 2 cut(s) 788, 1002
AsuC2I CCSGG 1 cut(s) 927
AsuHPI GGTGA 2 cut(s) 950, 1557
AvaI CYCGRG 1 cut(s) 748
AvaII GGWCC 2 cut(s) 788, 1002
BanII GRGCYC 2 cut(s) 82, 917
BbsI GAAGAC 1 cut(s) 1335
Bbv12I GWGCWC 2 cut(s) 82, 917
BbvI GCAGC 3 cut(s) 52, 520, 1126
BccI CCATC 5 cut(s) 509, 773, 1239, 1576, 1585
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 1 cut(s) 1403
BcnI CCSGG 1 cut(s) 927
BcoDI GTCTC 1 cut(s) 635
BcuI ACTAGT 1 cut(s) 1033
BfaI CTAG 5 cut(s) 309, 1034, 1433, 1470, 1611
BfmI CTRYAG 2 cut(s) 18, 807
BisI GCNGC 3 cut(s) 66, 534, 1115
BlsI GCNGC 3 cut(s) 67, 535, 1116
Bme1390I CCNGG 2 cut(s) 927, 1403
Bme18I GGWCC 2 cut(s) 788, 1002
BmeT110I CYCGRG 1 cut(s) 748
BmgT120I GGNCC 2 cut(s) 788, 1002
BmrFI CCNGG 2 cut(s) 927, 1403
BmrI ACTGGG 1 cut(s) 1564
BmsI GCATC 1 cut(s) 1126
BmuI ACTGGG 1 cut(s) 1564
BoxI GACNNNNGTC 1 cut(s) 1000
BpiI GAAGAC 1 cut(s) 1335
BpuEI CTTGAG 1 cut(s) 437
BpuMI CCSGG 1 cut(s) 927
BsaJI CCNNGG 1 cut(s) 1402
BsaWI WCCGGW 2 cut(s) 74, 562
BsaXI ACNNNNNCTCC 2 cut(s) 1151, 1181
Bsc4I CCNNNNNNNGG 3 cut(s) 1247, 1402, 1403
Bse1I ACTGG 4 cut(s) 1178, 1378, 1415, 1559
BseAI TCCGGA 1 cut(s) 562
BseBI CCWGG 1 cut(s) 1403
BseDI CCNNGG 1 cut(s) 1402
BseGI GGATG 5 cut(s) 498, 520, 637, 784, 1264
BseLI CCNNNNNNNGG 3 cut(s) 1247, 1402, 1403
BseMII CTCAG 2 cut(s) 714, 1560
BseNI ACTGG 4 cut(s) 1178, 1378, 1415, 1559
BseRI GAGGAG 1 cut(s) 917
BseXI GCAGC 3 cut(s) 52, 520, 1126
BsgI GTGCAG 2 cut(s) 792, 1220
BsiHKAI GWGCWC 2 cut(s) 82, 917
BsiHKCI CYCGRG 1 cut(s) 748
BsiSI CCGG 3 cut(s) 75, 563, 927
BslI CCNNNNNNNGG 3 cut(s) 1247, 1402, 1403
BsmAI GTCTC 1 cut(s) 635
BsmI GAATGC 1 cut(s) 1190
BsoBI CYCGRG 1 cut(s) 748
Bsp1286I GDGCHC 2 cut(s) 82, 917
Bsp13I TCCGGA 1 cut(s) 562
Bsp143I GATC 4 cut(s) 98, 245, 782, 1530
BspACI CCGC 3 cut(s) 936, 964, 1248
BspCNI CTCAG 2 cut(s) 715, 1561
BspEI TCCGGA 1 cut(s) 562
BspPI GGATC 3 cut(s) 93, 253, 790
BspQI GCTCTTC 2 cut(s) 87, 1497
BsrBI CCGCTC 1 cut(s) 966
BsrI ACTGG 4 cut(s) 1178, 1378, 1415, 1559
BssECI CCNNGG 1 cut(s) 1402
BssMI GATC 4 cut(s) 98, 245, 782, 1530
Bst2UI CCWGG 1 cut(s) 1403
Bst4CI ACNGT 4 cut(s) 136, 709, 999, 1348
Bst6I CTCTTC 3 cut(s) 87, 1497, 1614
BstC8I GCNNGC 2 cut(s) 400, 1246
BstDEI CTNAG 2 cut(s) 723, 1569
BstF5I GGATG 5 cut(s) 498, 520, 637, 784, 1264
BstKTI GATC 4 cut(s) 101, 248, 785, 1533
BstMAI GTCTC 1 cut(s) 635
BstMBI GATC 4 cut(s) 98, 245, 782, 1530
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 1 cut(s) 1403
BstNSI RCATGY 1 cut(s) 855
BstPAI GACNNNNGTC 1 cut(s) 1000
BstSCI CCNGG 2 cut(s) 925, 1401
BstSFI CTRYAG 2 cut(s) 18, 807
BstV1I GCAGC 3 cut(s) 52, 520, 1126
BstV2I GAAGAC 1 cut(s) 1335
BstX2I RGATCY 1 cut(s) 782
BstXI CCANNNNNNTGG 1 cut(s) 232
BstYI RGATCY 1 cut(s) 782
BtsCI GGATG 5 cut(s) 498, 520, 637, 784, 1264
BtsI GCAGTG 2 cut(s) 597, 801
BtsIMutI CAGTG 4 cut(s) 597, 603, 720, 801
Cac8I GCNNGC 2 cut(s) 400, 1246
Cfr13I GGNCC 2 cut(s) 788, 1002
CseI GACGC 2 cut(s) 810, 1268
Csp6I GTAC 2 cut(s) 891, 1255
CspCI CAANNNNNGTGG 2 cut(s) 310, 345
CviAII CATG 8 cut(s) 852, 864, 918, 988, 1022, 1067, 1358, 1446
CviQI GTAC 2 cut(s) 891, 1255
DdeI CTNAG 2 cut(s) 723, 1569
DpnI GATC 4 cut(s) 100, 247, 784, 1532
DpnII GATC 4 cut(s) 98, 245, 782, 1530
DraIII CACNNNGTG 1 cut(s) 726
Eam1104I CTCTTC 3 cut(s) 87, 1497, 1614
EarI CTCTTC 3 cut(s) 87, 1497, 1614
EciI GGCGGA 1 cut(s) 1263
Ecl136II GAGCTC 2 cut(s) 80, 915
Eco24I GRGCYC 2 cut(s) 82, 917
Eco47I GGWCC 2 cut(s) 788, 1002
Eco53kI GAGCTC 2 cut(s) 80, 915
Eco57I CTGAAG 1 cut(s) 213
Eco88I CYCGRG 1 cut(s) 748
EcoICRI GAGCTC 2 cut(s) 80, 915
EcoRI GAATTC 1 cut(s) 343
EcoRII CCWGG 1 cut(s) 1401
EcoT22I ATGCAT 1 cut(s) 1141
EcoT38I GRGCYC 2 cut(s) 82, 917
FaeI CATG 8 cut(s) 855, 867, 921, 991, 1025, 1070, 1361, 1449
FalI AAGNNNNNCTT 2 cut(s) 1520, 1552
FatI CATG 8 cut(s) 851, 863, 917, 987, 1021, 1066, 1357, 1445
Fnu4HI GCNGC 3 cut(s) 66, 534, 1115
FokI GGATG 5 cut(s) 505, 527, 644, 791, 1251
FriOI GRGCYC 2 cut(s) 82, 917
Fsp4HI GCNGC 3 cut(s) 66, 534, 1115
FspBI CTAG 5 cut(s) 309, 1034, 1433, 1470, 1611
GluI GCNGC 3 cut(s) 66, 534, 1115
HapII CCGG 3 cut(s) 75, 563, 927
HgaI GACGC 2 cut(s) 810, 1268
Hin1II CATG 8 cut(s) 855, 867, 921, 991, 1025, 1070, 1361, 1449
HindIII AAGCTT 1 cut(s) 413
HpaII CCGG 3 cut(s) 75, 563, 927
HphI GGTGA 2 cut(s) 950, 1557
Hpy166II GTNNAC 5 cut(s) 376, 801, 941, 1255, 1548
Hpy188I TCNGA 4 cut(s) 40, 214, 430, 613
Hpy188III TCNNGA 5 cut(s) 563, 618, 679, 786, 1433
Hpy8I GTNNAC 5 cut(s) 376, 801, 941, 1255, 1548
Hpy99I CGWCG 3 cut(s) 119, 1262, 1527
HpyAV CCTTC 7 cut(s) 112, 188, 278, 801, 852, 854, 1007
HpyCH4III ACNGT 4 cut(s) 136, 709, 999, 1348
HpyCH4IV ACGT 4 cut(s) 692, 1008, 1522, 1544
HpyCH4V TGCA 9 cut(s) 398, 603, 773, 1049, 1106, 1114, 1139, 1237, 1361
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 2 cut(s) 723, 1569
HpySE526I ACGT 4 cut(s) 692, 1008, 1522, 1544
Hsp92II CATG 8 cut(s) 855, 867, 921, 991, 1025, 1070, 1361, 1449
Kpn2I TCCGGA 1 cut(s) 562
Kzo9I GATC 4 cut(s) 98, 245, 782, 1530
LguI GCTCTTC 2 cut(s) 87, 1497
LmnI GCTCC 4 cut(s) 77, 235, 1030, 1612
Lsp1109I GCAGC 3 cut(s) 52, 520, 1126
LweI GCATC 1 cut(s) 1126
MaeI CTAG 5 cut(s) 309, 1034, 1433, 1470, 1611
MaeII ACGT 4 cut(s) 692, 1008, 1522, 1544
MaeIII GTNAC 3 cut(s) 382, 743, 763
MalI GATC 4 cut(s) 100, 247, 784, 1532
MbiI CCGCTC 1 cut(s) 966
MboI GATC 4 cut(s) 98, 245, 782, 1530
MflI RGATCY 1 cut(s) 782
MhlI GDGCHC 2 cut(s) 82, 917
MluCI AATT 9 cut(s) 183, 227, 343, 473, 683, 1041, 1281, 1314, 1476
MmeI TCCRAC 4 cut(s) 213, 479, 1029, 1258
MnlI CCTC 9 cut(s) 96, 728, 744, 769, 895, 1063, 1080, 1414, 1617
Mph1103I ATGCAT 1 cut(s) 1141
MroI TCCGGA 1 cut(s) 562
MroXI GAANNNNTTC 2 cut(s) 954, 1163
MseI TTAA 3 cut(s) 93, 450, 689
MspI CCGG 3 cut(s) 75, 563, 927
MspR9I CCNGG 2 cut(s) 927, 1403
Mva1269I GAATGC 1 cut(s) 1190
MvaI CCWGG 1 cut(s) 1403
MwoI GCNNNNNNNGC 1 cut(s) 395
NciI CCSGG 1 cut(s) 927
NdeII GATC 4 cut(s) 98, 245, 782, 1530
NlaIII CATG 8 cut(s) 855, 867, 921, 991, 1025, 1070, 1361, 1449
NmuCI GTSAC 2 cut(s) 382, 763
NsiI ATGCAT 1 cut(s) 1141
NspI RCATGY 1 cut(s) 855
PaeR7I CTCGAG 1 cut(s) 748
PciI ACATGT 1 cut(s) 851
PciSI GCTCTTC 2 cut(s) 87, 1497
PctI GAATGC 1 cut(s) 1190
PdmI GAANNNNTTC 2 cut(s) 954, 1163
PflFI GACNNNGTC 1 cut(s) 505
PkrI GCNGC 3 cut(s) 67, 535, 1116
PscI ACATGT 1 cut(s) 851
PshAI GACNNNNGTC 1 cut(s) 1000
Psp124BI GAGCTC 2 cut(s) 82, 917
Psp1406I AACGTT 2 cut(s) 1008, 1544
Psp6I CCWGG 1 cut(s) 1401
PspGI CCWGG 1 cut(s) 1401
PspPI GGNCC 2 cut(s) 788, 1002
PspXI VCTCGAGB 1 cut(s) 748
PsuI RGATCY 1 cut(s) 782
PsyI GACNNNGTC 1 cut(s) 505
RsaI GTAC 2 cut(s) 892, 1256
RsaNI GTAC 2 cut(s) 891, 1255
SacI GAGCTC 2 cut(s) 82, 917
SapI GCTCTTC 2 cut(s) 87, 1497
SaqAI TTAA 3 cut(s) 93, 450, 689
SatI GCNGC 3 cut(s) 66, 534, 1115
Sau3AI GATC 4 cut(s) 98, 245, 782, 1530
Sau96I GGNCC 2 cut(s) 788, 1002
ScrFI CCNGG 2 cut(s) 927, 1403
SduI GDGCHC 2 cut(s) 82, 917
SfaNI GCATC 1 cut(s) 1126
SfcI CTRYAG 2 cut(s) 18, 807
Sfr274I CTCGAG 1 cut(s) 748
SinI GGWCC 2 cut(s) 788, 1002
SlaI CTCGAG 1 cut(s) 748
SmlI CTYRAG 2 cut(s) 416, 748
SmoI CTYRAG 2 cut(s) 416, 748
SpeI ACTAGT 1 cut(s) 1033
Sse9I AATT 9 cut(s) 183, 227, 343, 473, 683, 1041, 1281, 1314, 1476
SsiI CCGC 3 cut(s) 936, 964, 1248
SspMI CTAG 5 cut(s) 309, 1034, 1433, 1470, 1611
SstI GAGCTC 2 cut(s) 82, 917
StyD4I CCNGG 2 cut(s) 925, 1401
TaaI ACNGT 4 cut(s) 136, 709, 999, 1348
TaiI ACGT 4 cut(s) 695, 1011, 1525, 1547
TasI AATT 9 cut(s) 183, 227, 343, 473, 683, 1041, 1281, 1314, 1476
TatI WGTACW 1 cut(s) 890
Tru1I TTAA 3 cut(s) 93, 450, 689
Tru9I TTAA 3 cut(s) 93, 450, 689
TscAI CASTG 4 cut(s) 597, 610, 727, 808
TseFI GTSAC 2 cut(s) 382, 763
TseI GCWGC 3 cut(s) 65, 533, 1114
Tsp45I GTSAC 2 cut(s) 382, 763
TspDTI ATGAA 6 cut(s) 447, 557, 963, 1004, 1309, 1341
TspGWI ACGGA 1 cut(s) 1340
TspRI CASTG 4 cut(s) 597, 610, 727, 808
Tth111I GACNNNGTC 1 cut(s) 505
VpaK11BI GGWCC 2 cut(s) 788, 1002
XapI RAATTY 4 cut(s) 343, 683, 1314, 1476
XbaI TCTAGA 1 cut(s) 1432
XceI RCATGY 1 cut(s) 855
XhoI CTCGAG 1 cut(s) 748
XmnI GAANNNNTTC 2 cut(s) 954, 1163
XspI CTAG 5 cut(s) 309, 1034, 1433, 1470, 1611
Zsp2I ATGCAT 1 cut(s) 1141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.