Rmu_sc0011021.1_g000010

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011021.1
OG0013334
Physical Location & Seq
Forward (+)
12795 .. 15027
2233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011021.1_g000010.1.cds

Sequence Viewer

Length: 1266 bp
atgtctgttactagtttgctgagagtgtttagtgtggcacttaagaaagccggtttgccttgtaatttggaatttgaaactggtgatgatgattgtaagattagcgggtggcttatgcctgaggatgtgcttatgcttctttggatgtgttgggccatgtcttggcattctaggactagagaatttccgagagagaaaggcaagttgtgtctgccggatgttaagcatattgtgttgtcggctattgaatcatgtgccgaagctgaaagtggactgaatgtttgggactgtgagctttcaggtttggaagttcaacttcctgtggggaagtttcttacttgggttttgaagacagtgtctagtctccctggttgctttaccgagtttgtgtatgcagtactcaaacattctgcttctcaagaggctggactggaatgttcgacttcttcagctgcagttacttcgtcaactgtggcatgcagtgctaatcttttgacccctggaatagcctgggctatgtccctcacactaacaggccctctaagtgaagagatctcaagggcatgcttcccttcagatgctaatggaataaataatgacctactttacaggtcacatcttcatgggagagggttgaatagattctggtctaatgttcaaggttaccaaggtccactgcttgttctgatttctgcaacctcagaagatggtagtgccaataaaagaaattggattgtaggtgttctcacacatcaaggttttgagaatagggatctcttctatggaagtccaggaagtctgtacgctataagtccagtctttcatgtgtatccacctactggaaaggaaaggaactttgtgtatagccacctccatcccactggcaaggtgtatgaggtgaaaccgaagcctgttggaataggatttggtggaactctgggaaatgagagaatttatgtggatgaagatttttctaaggttaccatacgccatcatgcagctgacaaaacttatcagtctggctccctctttcctgatcagggctttctacctgttgaagctttgatcacagaagttgaaatttggggacttggtggaaggggcgcaaaggatgtgcaggattcatataagaatagggaacaacttttcactgagcaaagacgaaaggttgacttgaaaacatttgcaaactgggaggattcacctgaaaagatgatgatggacatggtctccaaccccaatgcagttcgacgtgaagaccggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

421

Amino Acids

46.73

Weight (kDa)

5.82

Isoelectric Point (pI)

43.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39590
fragaria_vesca FvH4_2g38790 FvH4_2g38790
malus_domestica MD09G1232000.v1.1
prunus_persica Prupe.1G368700_v2.0.a1
pyrus_communis pycom09g15130
rosa_chinensis RchiOBHm_Chr6g0302501
rosa_laevigata RLG00000011167
rosa_multiflora Rmu_sc0011021.1_g000010 Rmu_sc0018485.1_g000004 Rmu_sc0042878.1_g000001
rosa_roxburghii Rroxscaffold_7G00165710
rosa_rugosa Rorug06G0314600
rosa_samantha Rh6AG427800 Rh6BG474900 Rh6CG439900 Rh6DG426900
rosa_wichuraiana Rw6G037000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 162, 839
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 780
AcsI RAATTY 4 cut(s) 71, 182, 951, 1080
AcuI CTGAAG 2 cut(s) 432, 558
AfaI GTAC 2 cut(s) 399, 803
AfiI CCNNNNNNNGG 3 cut(s) 162, 839, 1040
AflII CTTAAG 1 cut(s) 41
AgeI ACCGGT 1 cut(s) 1260
AgsI TTSAA 9 cut(s) 77, 248, 314, 349, 637, 659, 1058, 1079, 1177
AhlI ACTAGT 1 cut(s) 11
AjiI CACGTC 1 cut(s) 1253
AjnI CCWGG 4 cut(s) 367, 499, 509, 790
AluBI AGCT 5 cut(s) 263, 295, 452, 1001, 1061
AluI AGCT 5 cut(s) 263, 295, 452, 1001, 1061
Alw26I GTCTC 2 cut(s) 368, 1234
AlwI GGATC 1 cut(s) 780
AoxI GGCC 2 cut(s) 153, 535
ApeKI GCWGC 2 cut(s) 452, 998
ApoI RAATTY 4 cut(s) 71, 182, 951, 1080
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
AsiGI ACCGGT 1 cut(s) 1260
Asp700I GAANNNNTTC 1 cut(s) 641
AspLEI GCGC 1 cut(s) 1106
AspS9I GGNCC 3 cut(s) 153, 536, 671
AsuHPI GGTGA 3 cut(s) 95, 910, 1194
AvaII GGWCC 1 cut(s) 671
AxyI CCTNAGG 1 cut(s) 120
BbsI GAAGAC 1 cut(s) 356
BbvI GCAGC 2 cut(s) 439, 1010
BccI CCATC 4 cut(s) 701, 882, 999, 1213
BcgI CGANNNNNNTGC 2 cut(s) 444, 478
BciT130I CCWGG 4 cut(s) 369, 501, 511, 792
BciVI GTATCC 1 cut(s) 840
BclI TGATCA 2 cut(s) 1036, 1065
BcoDI GTCTC 2 cut(s) 368, 1234
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 4 cut(s) 12, 171, 177, 360
BfmI CTRYAG 1 cut(s) 453
BfrI CTTAAG 1 cut(s) 41
BfuI GTATCC 1 cut(s) 840
BglII AGATCT 1 cut(s) 552
BisI GCNGC 2 cut(s) 453, 999
BlsI GCNGC 2 cut(s) 454, 1000
BmcAI AGTACT 1 cut(s) 399
Bme1390I CCNGG 4 cut(s) 369, 501, 511, 792
Bme18I GGWCC 1 cut(s) 671
BmgBI CACGTC 1 cut(s) 1253
BmgT120I GGNCC 3 cut(s) 153, 536, 671
BmiI GGNNCC 1 cut(s) 1024
BmrFI CCNGG 4 cut(s) 369, 501, 511, 792
BmrI ACTGGG 1 cut(s) 1201
BmsI GCATC 1 cut(s) 568
BmuI ACTGGG 1 cut(s) 1201
BpiI GAAGAC 1 cut(s) 356
BpuEI CTTGAG 2 cut(s) 402, 541
BsaI GGTCTC 1 cut(s) 1234
BsaJI CCNNGG 4 cut(s) 367, 499, 510, 667
BsaWI WCCGGW 1 cut(s) 1260
BsaXI ACNNNNNCTCC 2 cut(s) 1214, 1244
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 839, 1040
Bse118I RCCGGY 2 cut(s) 50, 1260
Bse1I ACTGG 6 cut(s) 85, 435, 815, 844, 886, 1196
Bse21I CCTNAGG 1 cut(s) 120
BseBI CCWGG 4 cut(s) 369, 501, 511, 792
BseDI CCNNGG 4 cut(s) 367, 499, 510, 667
BseGI GGATG 6 cut(s) 130, 150, 223, 874, 967, 1117
BseLI CCNNNNNNNGG 3 cut(s) 162, 839, 1040
BseMII CTCAG 4 cut(s) 11, 111, 714, 1143
BseNI ACTGG 6 cut(s) 85, 435, 815, 844, 886, 1196
BseXI GCAGC 2 cut(s) 439, 1010
BsgI GTGCAG 1 cut(s) 1136
BshFI GGCC 2 cut(s) 155, 537
BshTI ACCGGT 1 cut(s) 1260
BsiSI CCGG 3 cut(s) 51, 215, 1261
BslFI GGGAC 3 cut(s) 299, 505, 1101
BslI CCNNNNNNNGG 3 cut(s) 162, 839, 1040
BsmAI GTCTC 2 cut(s) 368, 1234
BsmFI GGGAC 3 cut(s) 299, 505, 1101
BsmI GAATGC 1 cut(s) 166
BsnI GGCC 2 cut(s) 155, 537
Bso31I GGTCTC 1 cut(s) 1234
Bsp143I GATC 4 cut(s) 552, 772, 1036, 1065
BspACI CCGC 1 cut(s) 105
BspANI GGCC 2 cut(s) 155, 537
BspCNI CTCAG 4 cut(s) 12, 112, 713, 1144
BspLI GGNNCC 1 cut(s) 1024
BspMAI CTGCAG 1 cut(s) 457
BspPI GGATC 1 cut(s) 780
BspTI CTTAAG 1 cut(s) 41
BspTNI GGTCTC 1 cut(s) 1234
BsrFI RCCGGY 2 cut(s) 50, 1260
BsrI ACTGG 6 cut(s) 85, 435, 815, 844, 886, 1196
BssAI RCCGGY 2 cut(s) 50, 1260
BssECI CCNNGG 4 cut(s) 367, 499, 510, 667
BssMI GATC 4 cut(s) 552, 772, 1036, 1065
BssT1I CCWWGG 1 cut(s) 667
Bst2UI CCWGG 4 cut(s) 369, 501, 511, 792
Bst4CI ACNGT 3 cut(s) 290, 355, 472
Bst6I CTCTTC 2 cut(s) 543, 782
BstAFI CTTAAG 1 cut(s) 41
BstAPI GCANNNNNTGC 1 cut(s) 482
BstC8I GCNNGC 2 cut(s) 478, 565
BstDEI CTNAG 6 cut(s) 20, 120, 542, 700, 975, 1152
BstEII GGTNACC 2 cut(s) 662, 979
BstF5I GGATG 6 cut(s) 130, 150, 223, 874, 967, 1117
BstHHI GCGC 1 cut(s) 1106
BstKTI GATC 4 cut(s) 555, 775, 1039, 1068
BstMAI GTCTC 2 cut(s) 368, 1234
BstMBI GATC 4 cut(s) 552, 772, 1036, 1065
BstMWI GCNNNNNNNGC 1 cut(s) 482
BstNI CCWGG 4 cut(s) 369, 501, 511, 792
BstNSI RCATGY 2 cut(s) 480, 567
BstPI GGTNACC 2 cut(s) 662, 979
BstSCI CCNGG 4 cut(s) 367, 499, 509, 790
BstSFI CTRYAG 1 cut(s) 453
BstV1I GCAGC 2 cut(s) 439, 1010
BstV2I GAAGAC 1 cut(s) 356
BstX2I RGATCY 2 cut(s) 552, 772
BstXI CCANNNNNNTGG 1 cut(s) 881
BstYI RGATCY 2 cut(s) 552, 772
Bsu36I CCTNAGG 1 cut(s) 120
BsuI GTATCC 1 cut(s) 840
BsuRI GGCC 2 cut(s) 155, 537
BtrI CACGTC 1 cut(s) 1253
BtsCI GGATG 6 cut(s) 130, 150, 223, 874, 967, 1117
BtsI GCAGTG 2 cut(s) 487, 674
BtsIMutI CAGTG 5 cut(s) 360, 487, 674, 879, 1149
Cac8I GCNNGC 2 cut(s) 478, 565
CfoI GCGC 1 cut(s) 1106
Cfr10I RCCGGY 2 cut(s) 50, 1260
Cfr13I GGNCC 3 cut(s) 153, 536, 671
Csp6I GTAC 2 cut(s) 398, 802
CspAI ACCGGT 1 cut(s) 1260
CviAII CATG 8 cut(s) 157, 252, 477, 564, 623, 824, 995, 1225
CviQI GTAC 2 cut(s) 398, 802
DdeI CTNAG 6 cut(s) 20, 120, 542, 700, 975, 1152
DpnI GATC 4 cut(s) 554, 774, 1038, 1067
DpnII GATC 4 cut(s) 552, 772, 1036, 1065
Eam1104I CTCTTC 2 cut(s) 543, 782
EarI CTCTTC 2 cut(s) 543, 782
Eco130I CCWWGG 1 cut(s) 667
Eco31I GGTCTC 1 cut(s) 1234
Eco47I GGWCC 1 cut(s) 671
Eco57I CTGAAG 2 cut(s) 432, 558
Eco81I CCTNAGG 1 cut(s) 120
Eco91I GGTNACC 2 cut(s) 662, 979
EcoO109I RGGNCCY 1 cut(s) 536
EcoO65I GGTNACC 2 cut(s) 662, 979
EcoRII CCWGG 4 cut(s) 367, 499, 509, 790
EcoT14I CCWWGG 1 cut(s) 667
ErhI CCWWGG 1 cut(s) 667
FaeI CATG 8 cut(s) 160, 255, 480, 567, 626, 827, 998, 1228
FalI AAGNNNNNCTT 4 cut(s) 300, 332, 1157, 1189
FaqI GGGAC 3 cut(s) 299, 505, 1101
FatI CATG 8 cut(s) 156, 251, 476, 563, 622, 823, 994, 1224
FauI CCCGC 1 cut(s) 98
FbaI TGATCA 2 cut(s) 1036, 1065
Fnu4HI GCNGC 2 cut(s) 453, 999
FokI GGATG 6 cut(s) 137, 157, 230, 861, 974, 1124
Fsp4HI GCNGC 2 cut(s) 453, 999
FspBI CTAG 4 cut(s) 12, 171, 177, 360
GlaI GCGC 1 cut(s) 1105
GluI GCNGC 2 cut(s) 453, 999
HaeIII GGCC 2 cut(s) 155, 537
HapII CCGG 3 cut(s) 51, 215, 1261
HhaI GCGC 1 cut(s) 1106
Hin1II CATG 8 cut(s) 160, 255, 480, 567, 626, 827, 998, 1228
Hin6I GCGC 1 cut(s) 1104
HinP1I GCGC 1 cut(s) 1104
HincII GTYRAC 2 cut(s) 468, 1171
HindII GTYRAC 2 cut(s) 468, 1171
HindIII AAGCTT 1 cut(s) 1059
HinfI GANTC 4 cut(s) 248, 642, 1121, 1199
HpaII CCGG 3 cut(s) 51, 215, 1261
HphI GGTGA 3 cut(s) 95, 910, 1194
Hpy166II GTNNAC 4 cut(s) 272, 468, 674, 1171
Hpy188I TCNGA 4 cut(s) 189, 577, 687, 703
Hpy188III TCNNGA 2 cut(s) 419, 1034
Hpy8I GTNNAC 4 cut(s) 272, 468, 674, 1171
Hpy99I CGWCG 1 cut(s) 1254
HpyAV CCTTC 2 cut(s) 582, 1092
HpyCH4III ACNGT 3 cut(s) 290, 355, 472
HpyCH4IV ACGT 1 cut(s) 1252
HpyCH4V TGCA 8 cut(s) 395, 455, 480, 695, 998, 1117, 1187, 1244
HpyF10VI GCNNNNNNNGC 1 cut(s) 482
HpyF3I CTNAG 6 cut(s) 20, 120, 542, 700, 975, 1152
HpySE526I ACGT 1 cut(s) 1252
Hsp92II CATG 8 cut(s) 160, 255, 480, 567, 626, 827, 998, 1228
HspAI GCGC 1 cut(s) 1104
Ksp22I TGATCA 2 cut(s) 1036, 1065
Kzo9I GATC 4 cut(s) 552, 772, 1036, 1065
LmnI GCTCC 1 cut(s) 1028
Lsp1109I GCAGC 2 cut(s) 439, 1010
LweI GCATC 1 cut(s) 568
MaeI CTAG 4 cut(s) 12, 171, 177, 360
MaeII ACGT 1 cut(s) 1252
MaeIII GTNAC 5 cut(s) 7, 457, 612, 662, 979
MalI GATC 4 cut(s) 554, 774, 1038, 1067
MboI GATC 4 cut(s) 552, 772, 1036, 1065
MboII GAAGA 7 cut(s) 361, 438, 560, 611, 716, 769, 977
MflI RGATCY 2 cut(s) 552, 772
MluCI AATT 6 cut(s) 64, 71, 182, 727, 951, 1080
MmeI TCCRAC 2 cut(s) 895, 1257
MroXI GAANNNNTTC 1 cut(s) 641
MseI TTAA 2 cut(s) 42, 222
MslI CAYNNNNRTG 1 cut(s) 621
MspA1I CMGCKG 2 cut(s) 452, 1001
MspCI CTTAAG 1 cut(s) 41
MspI CCGG 3 cut(s) 51, 215, 1261
MspR9I CCNGG 4 cut(s) 369, 501, 511, 792
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 4 cut(s) 369, 501, 511, 792
MwoI GCNNNNNNNGC 1 cut(s) 482
NdeII GATC 4 cut(s) 552, 772, 1036, 1065
NlaIII CATG 8 cut(s) 160, 255, 480, 567, 626, 827, 998, 1228
NlaIV GGNNCC 1 cut(s) 1024
NmuCI GTSAC 1 cut(s) 612
NspI RCATGY 2 cut(s) 480, 567
PaeI GCATGC 2 cut(s) 480, 567
PctI GAATGC 1 cut(s) 166
PdmI GAANNNNTTC 1 cut(s) 641
PfeI GAWTC 4 cut(s) 248, 642, 1121, 1199
PflFI GACNNNGTC 2 cut(s) 355, 1226
PflMI CCANNNNNTGG 2 cut(s) 162, 839
PfoI TCCNGGA 1 cut(s) 790
PinAI ACCGGT 1 cut(s) 1260
PkrI GCNGC 2 cut(s) 454, 1000
Psp6I CCWGG 4 cut(s) 367, 499, 509, 790
PspEI GGTNACC 2 cut(s) 662, 979
PspGI CCWGG 4 cut(s) 367, 499, 509, 790
PspN4I GGNNCC 1 cut(s) 1024
PspPI GGNCC 3 cut(s) 153, 536, 671
PstI CTGCAG 1 cut(s) 457
PsuI RGATCY 2 cut(s) 552, 772
PsyI GACNNNGTC 2 cut(s) 355, 1226
PvuII CAGCTG 2 cut(s) 452, 1001
RsaI GTAC 2 cut(s) 399, 803
RsaNI GTAC 2 cut(s) 398, 802
RseI CAYNNNNRTG 1 cut(s) 621
SaqAI TTAA 2 cut(s) 42, 222
SatI GCNGC 2 cut(s) 453, 999
Sau3AI GATC 4 cut(s) 552, 772, 1036, 1065
Sau96I GGNCC 3 cut(s) 153, 536, 671
ScaI AGTACT 1 cut(s) 399
ScrFI CCNGG 4 cut(s) 369, 501, 511, 792
SfaNI GCATC 1 cut(s) 568
SfcI CTRYAG 1 cut(s) 453
SinI GGWCC 1 cut(s) 671
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 3 cut(s) 41, 417, 556
SmoI CTYRAG 3 cut(s) 41, 417, 556
SpeI ACTAGT 1 cut(s) 11
SphI GCATGC 2 cut(s) 480, 567
Sse9I AATT 6 cut(s) 64, 71, 182, 727, 951, 1080
SsiI CCGC 1 cut(s) 105
SspMI CTAG 4 cut(s) 12, 171, 177, 360
StyD4I CCNGG 4 cut(s) 367, 499, 509, 790
StyI CCWWGG 1 cut(s) 667
TaaI ACNGT 3 cut(s) 290, 355, 472
TaiI ACGT 1 cut(s) 1255
TaqI TCGA 2 cut(s) 440, 1249
TasI AATT 6 cut(s) 64, 71, 182, 727, 951, 1080
TatI WGTACW 1 cut(s) 397
TfiI GAWTC 4 cut(s) 248, 642, 1121, 1199
Tru1I TTAA 2 cut(s) 42, 222
Tru9I TTAA 2 cut(s) 42, 222
TscAI CASTG 5 cut(s) 360, 487, 681, 886, 1156
TseFI GTSAC 1 cut(s) 612
TseI GCWGC 2 cut(s) 452, 998
Tsp45I GTSAC 1 cut(s) 612
TspDTI ATGAA 4 cut(s) 611, 812, 978, 1113
TspRI CASTG 5 cut(s) 360, 487, 681, 886, 1156
Tth111I GACNNNGTC 2 cut(s) 355, 1226
Van91I CCANNNNNTGG 2 cut(s) 162, 839
Vha464I CTTAAG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 671
XapI RAATTY 4 cut(s) 71, 182, 951, 1080
XceI RCATGY 2 cut(s) 480, 567
XmnI GAANNNNTTC 1 cut(s) 641
XspI CTAG 4 cut(s) 12, 171, 177, 360
ZrmI AGTACT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.