RLG00000011167

domain in TBC and LysM domain containing proteins

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
7288310 .. 7290979
2670 bp
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UTR
Exon/CDS
Intron
RLM00000011167

Sequence Viewer

Length: 1611 bp
ATGGGAGCGTCATCTTCGTCAGAGCAGACGGTTCCGATTGAGCAACGAGAGGCCGAAACCCTAGCAGCCTCCACCGGAGCTCTTTCTACGCTTCGGAAGTGTTTCTCTAACCTCGCCGATCCTCACTCCGGTGCTATTCCCTTCGACTCTCTTCAGCAATGCTTTCGGTTAAGTTACGAGAATCCGGTATGCGAAGGTCTTGCAATTCCGGTATCATTTCCGGGAGGGCTGGATCACGTTGGATGCTGCATAGCGGAGCTGTTTTTCGTGACGGAAAAAGGCGGAGTGAGTTGGATTGAGTTCGTTAGAGGTTACAATAGGTGTTGTGCAAGAAAGACATTGTCCATGTCTGTCACTACTTTGCTGAGAGTGTTTAGTGTGGCACTTAAGAAAGCCGGTTTGCCTTGTAATTTGGAATTTGAAACTGGTGATGATGATTGTAAGATTAGCGGGTGGCTTATGCCTGTGGATGTGCTTATGCTTCTTTGGATGTGTTGGGCCATGTCTTGGTATACTAGGACTAGAGAATTTCCGAAAGAGAAAGGCAAGTTGTGTCTGCCGGATGTTAAGCATATTGTGTTGTCTGCTATTGAATCGTGTGCCGAAGCTGAAAGTGGACTGAATGTTTGGGACTGTGAGCTTTCGGGTTTGGAAGTTCAACTCCCTGTGGGGAAGTTTCTTACTTGGGTTTTGAAGACAGTGCCTAGTCTCCCTGGTTGCTTTACCGAGTTTGTGTATGCAGTACTCAAACATTCTGCTTCTCAAGAGGCTGGACTGGAATGTTCGACTTCTTCAGCTGCAGTTACTTCGTCAACTGTGGCATGCAGTTCTAATCTTTTGTCCCCTGGAATAGCATGGGCTATTTCCCTCACACTAACAGGCCCTCTAAGTGAAGAGATATCAAGGGCATGCTTCCCTACCGATGCTAATGGAATAAATAATGACCTACTTTACAGGTCACATCTTCATGGGAGAGGGTTGAATAGATTCTGGTCTAATGTTCAAGGTTACCAAGGTCCACTGCTTGTTCTGATTTCTGCAACCTCAGAAGATGGTAGTGCCAATAAAAGAAATTGGATTGTAGGTGTTCTCACACATCAAGGTTTTGAGAATAGGGATCTCTTCTATGGAAGTTCAGGAAGTCTGTACGCTATAAGTCCAGTCTTTCATGTGTATCCACCTACTGGAAAGGAAAGGAACTTTGTGTATAGCCATCTCCATCCCACTGGCAGGGTGTATGAGGCGAAACCGAAGCCTGTTGGGATAGGATTTGGTGGAACTCTGGGAAATGAGAGAATTTATGTGGATGAAGATTTTTCTAAGGTTACCATTCGCCATCATGCAGCTGACAAAACTTATCAGTCTGGCTCTCTCTTTCCTGATCAGGGCTTTCTACCTGTCGAAGCTTTGATCACAGAAGTTGAAATTTGGGGACTCGGTGGGAGGGGTGCCAAGGATGTGCAGGATTCATATAAGAATAGGGAACAACTTTTCACTGAGCAAAGACGAAAGGTTGACTTGAAAACATTTGCGAATTGGGAGGATTCACCTGAAAAGATGATGATGGACATGGTCTCCAACCCCAATGCAATTCAACGCGAAGACCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

537

Amino Acids

59.05

Weight (kDa)

5.64

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 302 - 480 3.9e-25 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013334)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1448
AccB7I CCANNNNNTGG 2 cut(s) 507, 1184
AccI GTMKAC 1 cut(s) 512
AccII CGCG 1 cut(s) 1599
AciI CCGC 4 cut(s) 254, 282, 450, 1606
AclWI GGATC 3 cut(s) 113, 240, 1125
AcsI RAATTY 4 cut(s) 416, 527, 1296, 1425
AcuI CTGAAG 2 cut(s) 137, 777
AfaI GTAC 2 cut(s) 744, 1148
AfiI CCNNNNNNNGG 5 cut(s) 128, 507, 1184, 1230, 1385
AflII CTTAAG 1 cut(s) 386
AgsI TTSAA 9 cut(s) 422, 593, 659, 694, 982, 1004, 1424, 1522, 1595
AjnI CCWGG 2 cut(s) 712, 844
AleI CACNNNNGTG 1 cut(s) 129
AluBI AGCT 7 cut(s) 80, 259, 608, 640, 797, 1346, 1406
AluI AGCT 7 cut(s) 80, 259, 608, 640, 797, 1346, 1406
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 2 cut(s) 713, 1579
AlwI GGATC 3 cut(s) 113, 240, 1125
AoxI GGCC 3 cut(s) 51, 498, 880
ApeKI GCWGC 4 cut(s) 65, 246, 797, 1343
ApoI RAATTY 4 cut(s) 416, 527, 1296, 1425
ArsI GACNNNNNNTTYG 2 cut(s) 609, 641
Asp700I GAANNNNTTC 2 cut(s) 101, 986
AspS9I GGNCC 3 cut(s) 498, 881, 1016
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 440, 1539
AvaII GGWCC 1 cut(s) 1016
BanI GGYRCC 1 cut(s) 1448
BanII GRGCYC 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 701
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 4 cut(s) 77, 233, 784, 1355
BccI CCATC 5 cut(s) 1046, 1221, 1227, 1344, 1558
BcgI CGANNNNNNTGC 6 cut(s) 146, 180, 182, 216, 789, 823
BciT130I CCWGG 2 cut(s) 714, 846
BciVI GTATCC 1 cut(s) 1185
BclI TGATCA 2 cut(s) 1381, 1410
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 713, 1579
BfaI CTAG 4 cut(s) 62, 516, 522, 705
BfmI CTRYAG 1 cut(s) 798
BfrI CTTAAG 1 cut(s) 386
BfuI GTATCC 1 cut(s) 1185
BisI GCNGC 4 cut(s) 66, 247, 798, 1344
BlsI GCNGC 4 cut(s) 67, 248, 799, 1345
BmcAI AGTACT 1 cut(s) 744
Bme1390I CCNGG 3 cut(s) 222, 714, 846
Bme18I GGWCC 1 cut(s) 1016
BmgT120I GGNCC 3 cut(s) 498, 881, 1016
BmiI GGNNCC 2 cut(s) 33, 1450
BmrFI CCNGG 3 cut(s) 222, 714, 846
BmsI GCATC 2 cut(s) 233, 913
BpiI GAAGAC 1 cut(s) 701
BpuEI CTTGAG 1 cut(s) 747
BpuMI CCSGG 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 1579
BsaJI CCNNGG 4 cut(s) 712, 844, 1012, 1452
BsaWI WCCGGW 4 cut(s) 74, 128, 184, 208
BsaXI ACNNNNNCTCC 2 cut(s) 1559, 1589
Bsc4I CCNNNNNNNGG 5 cut(s) 128, 507, 1184, 1230, 1385
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 5 cut(s) 430, 780, 1160, 1189, 1231
Bse3DI GCAATG 1 cut(s) 164
BseBI CCWGG 2 cut(s) 714, 846
BseDI CCNNGG 4 cut(s) 712, 844, 1012, 1452
BseGI GGATG 7 cut(s) 248, 475, 495, 568, 1219, 1312, 1462
BseLI CCNNNNNNNGG 5 cut(s) 128, 507, 1184, 1230, 1385
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 3 cut(s) 356, 1059, 1488
BseNI ACTGG 5 cut(s) 430, 780, 1160, 1189, 1231
BseXI GCAGC 4 cut(s) 77, 233, 784, 1355
BsgI GTGCAG 1 cut(s) 1481
Bsh1236I CGCG 1 cut(s) 1599
BshFI GGCC 3 cut(s) 53, 500, 882
BshNI GGYRCC 1 cut(s) 1448
BsiHKAI GWGCWC 1 cut(s) 82
BsiSI CCGG 7 cut(s) 75, 129, 185, 209, 221, 396, 560
BslFI GGGAC 3 cut(s) 644, 826, 1446
BslI CCNNNNNNNGG 5 cut(s) 128, 507, 1184, 1230, 1385
BsmAI GTCTC 2 cut(s) 713, 1579
BsmFI GGGAC 3 cut(s) 644, 826, 1446
BsnI GGCC 3 cut(s) 53, 500, 882
Bso31I GGTCTC 1 cut(s) 1579
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 5 cut(s) 118, 232, 1117, 1381, 1410
BspACI CCGC 4 cut(s) 254, 282, 450, 1606
BspANI GGCC 3 cut(s) 53, 500, 882
BspCNI CTCAG 3 cut(s) 357, 1058, 1489
BspFNI CGCG 1 cut(s) 1599
BspLI GGNNCC 2 cut(s) 33, 1450
BspMAI CTGCAG 1 cut(s) 802
BspPI GGATC 3 cut(s) 113, 240, 1125
BspT107I GGYRCC 1 cut(s) 1448
BspTI CTTAAG 1 cut(s) 386
BspTNI GGTCTC 1 cut(s) 1579
BsrDI GCAATG 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 395
BsrI ACTGG 5 cut(s) 430, 780, 1160, 1189, 1231
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 4 cut(s) 712, 844, 1012, 1452
BssMI GATC 5 cut(s) 118, 232, 1117, 1381, 1410
BssNAI GTATAC 1 cut(s) 513
BssT1I CCWWGG 2 cut(s) 1012, 1452
Bst1107I GTATAC 1 cut(s) 513
Bst2UI CCWGG 2 cut(s) 714, 846
Bst4CI ACNGT 4 cut(s) 31, 635, 700, 817
Bst6I CTCTTC 3 cut(s) 156, 888, 1127
BstAFI CTTAAG 1 cut(s) 386
BstC8I GCNNGC 2 cut(s) 823, 910
BstDEI CTNAG 5 cut(s) 365, 887, 1045, 1320, 1497
BstEII GGTNACC 2 cut(s) 1007, 1324
BstF5I GGATG 7 cut(s) 248, 475, 495, 568, 1219, 1312, 1462
BstFNI CGCG 1 cut(s) 1599
BstKTI GATC 5 cut(s) 121, 235, 1120, 1384, 1413
BstMAI GTCTC 2 cut(s) 713, 1579
BstMBI GATC 5 cut(s) 118, 232, 1117, 1381, 1410
BstMWI GCNNNNNNNGC 1 cut(s) 1605
BstNI CCWGG 2 cut(s) 714, 846
BstNSI RCATGY 2 cut(s) 825, 912
BstPI GGTNACC 2 cut(s) 1007, 1324
BstSCI CCNGG 3 cut(s) 220, 712, 844
BstSFI CTRYAG 1 cut(s) 798
BstUI CGCG 1 cut(s) 1599
BstV1I GCAGC 4 cut(s) 77, 233, 784, 1355
BstV2I GAAGAC 1 cut(s) 701
BstX2I RGATCY 1 cut(s) 1117
BstXI CCANNNNNNTGG 1 cut(s) 1226
BstYI RGATCY 1 cut(s) 1117
BstZ17I GTATAC 1 cut(s) 513
BsuI GTATCC 1 cut(s) 1185
BsuRI GGCC 3 cut(s) 53, 500, 882
BtsCI GGATG 7 cut(s) 248, 475, 495, 568, 1219, 1312, 1462
BtsI GCAGTG 1 cut(s) 1019
BtsIMutI CAGTG 4 cut(s) 705, 1019, 1224, 1494
Cac8I GCNNGC 2 cut(s) 823, 910
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 3 cut(s) 498, 881, 1016
Csp6I GTAC 2 cut(s) 743, 1147
CviAII CATG 9 cut(s) 346, 502, 822, 855, 909, 968, 1169, 1340, 1570
CviQI GTAC 2 cut(s) 743, 1147
DdeI CTNAG 5 cut(s) 365, 887, 1045, 1320, 1497
DpnI GATC 5 cut(s) 120, 234, 1119, 1383, 1412
DpnII GATC 5 cut(s) 118, 232, 1117, 1381, 1410
Eam1104I CTCTTC 3 cut(s) 156, 888, 1127
EarI CTCTTC 3 cut(s) 156, 888, 1127
EciI GGCGGA 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 1012, 1452
Eco24I GRGCYC 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 1579
Eco32I GATATC 1 cut(s) 900
Eco47I GGWCC 1 cut(s) 1016
Eco53kI GAGCTC 1 cut(s) 80
Eco57I CTGAAG 2 cut(s) 137, 777
Eco91I GGTNACC 2 cut(s) 1007, 1324
EcoICRI GAGCTC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 881
EcoO65I GGTNACC 2 cut(s) 1007, 1324
EcoRII CCWGG 2 cut(s) 712, 844
EcoRV GATATC 1 cut(s) 900
EcoT14I CCWWGG 2 cut(s) 1012, 1452
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 2 cut(s) 1012, 1452
FaeI CATG 9 cut(s) 349, 505, 825, 858, 912, 971, 1172, 1343, 1573
FalI AAGNNNNNCTT 2 cut(s) 1502, 1534
FaqI GGGAC 3 cut(s) 644, 826, 1446
FatI CATG 9 cut(s) 345, 501, 821, 854, 908, 967, 1168, 1339, 1569
FauI CCCGC 1 cut(s) 443
FbaI TGATCA 2 cut(s) 1381, 1410
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 4 cut(s) 66, 247, 798, 1344
FokI GGATG 7 cut(s) 255, 482, 502, 575, 1206, 1319, 1469
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 4 cut(s) 66, 247, 798, 1344
FspBI CTAG 4 cut(s) 62, 516, 522, 705
GluI GCNGC 4 cut(s) 66, 247, 798, 1344
HaeIII GGCC 3 cut(s) 53, 500, 882
HapII CCGG 7 cut(s) 75, 129, 185, 209, 221, 396, 560
Hin1II CATG 9 cut(s) 349, 505, 825, 858, 912, 971, 1172, 1343, 1573
HincII GTYRAC 2 cut(s) 813, 1516
HindII GTYRAC 2 cut(s) 813, 1516
HindIII AAGCTT 1 cut(s) 1404
HinfI GANTC 7 cut(s) 146, 181, 593, 987, 1434, 1466, 1544
HpaII CCGG 7 cut(s) 75, 129, 185, 209, 221, 396, 560
HphI GGTGA 2 cut(s) 440, 1539
Hpy166II GTNNAC 5 cut(s) 513, 617, 813, 1019, 1516
Hpy188I TCNGA 6 cut(s) 22, 36, 96, 534, 1032, 1048
Hpy188III TCNNGA 4 cut(s) 268, 764, 1137, 1379
Hpy8I GTNNAC 5 cut(s) 513, 617, 813, 1019, 1516
HpyAV CCTTC 2 cut(s) 151, 188
HpyCH4III ACNGT 4 cut(s) 31, 635, 700, 817
HpyCH4IV ACGT 1 cut(s) 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 1605
HpyF3I CTNAG 5 cut(s) 365, 887, 1045, 1320, 1497
HpySE526I ACGT 1 cut(s) 237
Hsp92II CATG 9 cut(s) 349, 505, 825, 858, 912, 971, 1172, 1343, 1573
Ksp22I TGATCA 2 cut(s) 1381, 1410
Kzo9I GATC 5 cut(s) 118, 232, 1117, 1381, 1410
LmnI GCTCC 3 cut(s) 5, 77, 256
Lsp1109I GCAGC 4 cut(s) 77, 233, 784, 1355
LweI GCATC 2 cut(s) 233, 913
MaeI CTAG 4 cut(s) 62, 516, 522, 705
MaeII ACGT 1 cut(s) 237
MaeIII GTNAC 8 cut(s) 173, 268, 311, 352, 802, 957, 1007, 1324
MalI GATC 5 cut(s) 120, 234, 1119, 1383, 1412
MboI GATC 5 cut(s) 118, 232, 1117, 1381, 1410
MboII GAAGA 9 cut(s) 6, 143, 706, 783, 905, 956, 1061, 1114, 1322
MflI RGATCY 1 cut(s) 1117
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 9 cut(s) 204, 409, 416, 527, 1072, 1296, 1425, 1534, 1590
MlyI GAGTC 2 cut(s) 140, 1428
MmeI TCCRAC 3 cut(s) 220, 272, 1602
MroXI GAANNNNTTC 2 cut(s) 101, 986
MseI TTAA 3 cut(s) 170, 387, 567
MslI CAYNNNNRTG 2 cut(s) 129, 966
MspA1I CMGCKG 2 cut(s) 797, 1346
MspCI CTTAAG 1 cut(s) 386
MspI CCGG 7 cut(s) 75, 129, 185, 209, 221, 396, 560
MspR9I CCNGG 3 cut(s) 222, 714, 846
MvaI CCWGG 2 cut(s) 714, 846
MvnI CGCG 1 cut(s) 1599
MwoI GCNNNNNNNGC 1 cut(s) 1605
NciI CCSGG 1 cut(s) 222
NdeII GATC 5 cut(s) 118, 232, 1117, 1381, 1410
NlaIII CATG 9 cut(s) 349, 505, 825, 858, 912, 971, 1172, 1343, 1573
NlaIV GGNNCC 2 cut(s) 33, 1450
NmuCI GTSAC 3 cut(s) 268, 352, 957
NspI RCATGY 2 cut(s) 825, 912
OliI CACNNNNGTG 1 cut(s) 129
PaeI GCATGC 2 cut(s) 825, 912
PdmI GAANNNNTTC 2 cut(s) 101, 986
PfeI GAWTC 5 cut(s) 181, 593, 987, 1466, 1544
PflFI GACNNNGTC 2 cut(s) 340, 1571
PflMI CCANNNNNTGG 2 cut(s) 507, 1184
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 4 cut(s) 67, 248, 799, 1345
PleI GAGTC 2 cut(s) 140, 1428
PpsI GAGTC 2 cut(s) 140, 1428
Psp124BI GAGCTC 1 cut(s) 82
Psp6I CCWGG 2 cut(s) 712, 844
PspEI GGTNACC 2 cut(s) 1007, 1324
PspGI CCWGG 2 cut(s) 712, 844
PspN4I GGNNCC 2 cut(s) 33, 1450
PspPI GGNCC 3 cut(s) 498, 881, 1016
PstI CTGCAG 1 cut(s) 802
PsuI RGATCY 1 cut(s) 1117
PsyI GACNNNGTC 2 cut(s) 340, 1571
PvuII CAGCTG 2 cut(s) 797, 1346
RsaI GTAC 2 cut(s) 744, 1148
RsaNI GTAC 2 cut(s) 743, 1147
RseI CAYNNNNRTG 2 cut(s) 129, 966
SacI GAGCTC 1 cut(s) 82
SaqAI TTAA 3 cut(s) 170, 387, 567
SatI GCNGC 4 cut(s) 66, 247, 798, 1344
Sau3AI GATC 5 cut(s) 118, 232, 1117, 1381, 1410
Sau96I GGNCC 3 cut(s) 498, 881, 1016
ScaI AGTACT 1 cut(s) 744
SchI GAGTC 2 cut(s) 140, 1428
ScrFI CCNGG 3 cut(s) 222, 714, 846
SduI GDGCHC 1 cut(s) 82
SfaNI GCATC 2 cut(s) 233, 913
SfcI CTRYAG 1 cut(s) 798
SinI GGWCC 1 cut(s) 1016
SmiMI CAYNNNNRTG 2 cut(s) 129, 966
SmlI CTYRAG 2 cut(s) 386, 762
SmoI CTYRAG 2 cut(s) 386, 762
SphI GCATGC 2 cut(s) 825, 912
Sse9I AATT 9 cut(s) 204, 409, 416, 527, 1072, 1296, 1425, 1534, 1590
SsiI CCGC 4 cut(s) 254, 282, 450, 1606
SspMI CTAG 4 cut(s) 62, 516, 522, 705
SstI GAGCTC 1 cut(s) 82
StyD4I CCNGG 3 cut(s) 220, 712, 844
StyI CCWWGG 2 cut(s) 1012, 1452
TaaI ACNGT 4 cut(s) 31, 635, 700, 817
TaiI ACGT 1 cut(s) 240
TaqI TCGA 3 cut(s) 144, 785, 1401
TasI AATT 9 cut(s) 204, 409, 416, 527, 1072, 1296, 1425, 1534, 1590
TatI WGTACW 1 cut(s) 742
TfiI GAWTC 5 cut(s) 181, 593, 987, 1466, 1544
Tru1I TTAA 3 cut(s) 170, 387, 567
Tru9I TTAA 3 cut(s) 170, 387, 567
TscAI CASTG 4 cut(s) 705, 1026, 1231, 1501
TseFI GTSAC 3 cut(s) 268, 352, 957
TseI GCWGC 4 cut(s) 65, 246, 797, 1343
Tsp45I GTSAC 3 cut(s) 268, 352, 957
TspDTI ATGAA 4 cut(s) 956, 1157, 1323, 1458
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 4 cut(s) 705, 1026, 1231, 1501
Tth111I GACNNNGTC 2 cut(s) 340, 1571
Van91I CCANNNNNTGG 2 cut(s) 507, 1184
Vha464I CTTAAG 1 cut(s) 386
VpaK11BI GGWCC 1 cut(s) 1016
XapI RAATTY 4 cut(s) 416, 527, 1296, 1425
XceI RCATGY 2 cut(s) 825, 912
XmiI GTMKAC 1 cut(s) 512
XmnI GAANNNNTTC 2 cut(s) 101, 986
XspI CTAG 4 cut(s) 62, 516, 522, 705
ZrmI AGTACT 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.