Rorug06G0314600

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013334
Physical Location & Seq
Reverse (-)
46570023 .. 46577711
7689 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0314600.1

Sequence Viewer

Length: 2463 bp
ATGACTGCTTTGGAAATGGCTCGAGATGGGTCCCTAGTTAATTTGGAGACTCAATCTCAAGCTAACAAGAAGACTGCAGCTTTAAGGAGCTGGATTTCATTGGACCAAGATGGCCAAGGAACCGTTTTGGATTTGGACAAGTATGCTATTATGCGCCGAGTTAACATTCACGCTCGAGATCTTCGGCTTCTTGATCCATTGCTATCCTATCCTTCCACAATTTTGGGCAGAGAGAAAGTCATTGTTCTCAATTTGGAGCACATCAAAGCAATAATCACAGCGGAGGAGGTATTGCTTAGGGACCCATTTGATGATAATGTGCTGCCTATTGTTGAGGAACTTCAAAGACGTTTGCCTCCGACAAGTGCCAATTTCAATGGCCCAGGAGAAGAAGAAGACTCCGGGTTACAAAAAGATGTTGAAACCAGTGAAGATGATGATTTTCCATTTGAATTCCGGGCATTAGAAGTTGCACTAGAAGCTATTTGTACTTCTCTTGATGCTTGCACAAGAGAACTAGAGAGGGATGCTTATCCAGCTTTAGATGAGCTTACCTCCAAGATCAGCAGTCGTAATTTGGATCGGGTGCGTAAGCTGAAGAGTGCAATGACCAGGTTGACAAATCGGGTTCAAAAGGTAAGGGATGAACTCGAACAGCTACTTGACGATGACGATGACATGGCCGACCTTTACTTATCAAGAAAGTTGGTTGGGACTTCACCTGTGAGTGACTCTGGTGCTCCAAATTGGTCTCTCGCCTCTCCTACTATAACCATAGGCTCTAAAGTATCCAGAGCCAGCAGGGCAAGTGTAACAACAGTTCAGGAGGAGAATGACGTGGAGGAGCTTGAGATGTTGCTCGAGGCCTACTTTATGCAAATTGAAGGCACGTTGAATAAATTGACCACGCTGCGTGAATACATTGATGACACAGAGGATTACATTAACATCCAGCTTGACAATCATCGGAATCAGCTAATTCAGCTAGAGCTGTTTCTGAGTTCCGGAACTGTTTGTGTGTCTATATATTCTTTGGTGGCTGCAATATTTGGCATGAACATTCCATATACATGGAACGAAAATCATGAGCACGTATTCAAATGGGTGGTGATTACAACAGGATTAGTTGGCGCATCGATTTTCTTGTTTATAGTTTCGTATGCTCGGCACAAAGGTCTTATGTCGAATCAGGTGGTGAAAGTCAAGAGGGAGACGATTACAGCATGCATGACCTGCCCGCTGTGCGATAAGCTGTTCAGAGAGGCCACCACCATATCTGAATGTCTTCATACGTTTTGCAGGAAGTGCATATATGACAAGATCACGGAAGAGGAAATAGAGTACTGCCCAATATGCAAGACCGATCTGGGTTGTGTTCCCTTGGAGAAATTAAGGCCTGACCACAATATGCAAGATGTAAGGGCCAAGATTTTCCCTTTCAAAAGAAGAAAGGTAAGTGCACCTGAAACTATGCCTTCAGCACTGCCGGCTAGAAGAAAGGAGAGATCACTCTCGTCATTGGTGGTCGGTACTCCCAGAGTGTCATCAACCCAGGCGACCATGACTGGAAGGAGAACTAAAGCAGTTGCAAGAAAGGCTTCTACTTTACAAGGATCTAGTTTTTTGGTTGAGAGGTCCGTTAATAAAGAGGACGGATCTGGGGAAGATCATGCAGAGAGCCAAAGCTCCCCGGAGGGCTCAGATAAGTCTGGTCAAAATGCGAGGCCGAGTTCGTTTTCTGCCGAACCCAGCGAACCTGTATCCAATAAAGAATCTGAGAATGGTGCTGAATCATGGGATGGGAAGTTAGACCTTTGGAAACCTCTAAATTGTTTGGTGGAAGTTGCAAATCGGACCAAGTCTCTCAAACCCAATTCACAAGGGTCTGAAAGAGCAGAAGCGGCTGTCATTCCCAATGAAACTCAAGTTCGTAAATTCAAGAATAAAGAAAACAAACAGAAATCAAAAGTTGAGGATGAAAAGAATAGCACTCATCCTCCCTCTCCTGAAACAATAAAACCTAAAAAGTTGCGTAGGGCTCGCCAAAAGAGGGAAGCTGTAGGAGAATCAAGCGTTACGCCCCAAGCTGTTTTGGATGCAGCCAGTGGAAAACTTGAAAGAAGAGTTGGTCCAATTTGGTTCTCCCTAGTAGCTTCTGAAGAACAGGAAGGAGAAGAATCCTTGCCTCAGATTCCTACCAGTTATTTAAGAATAAAAGATGGAAGTGTGCCTGTCTCATTTATCCAGAAGTACCTAATGAGGAAGCTAGATCTCACTAGTGAAACTGAGGTTGAGATCAAATGCATGGGACAACCAGTGACCCCCACATTGGAGATGTATAATTTGGTTGACTTGTGGCTACAAACCGCATCACCTACACAAAGAATTCCAGCATCCATTGGTTCCTCTGCAAAGGATTTTGTGATGGTGCTCGGGTATTCTCGAAAGATTTCAAACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

820

Amino Acids

91.76

Weight (kDa)

5.56

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MRS2-like PF22099 38 - 235 8e-26 Magnesium transporter MRS2-like
MRS2-like PF22099 275 - 323 4.2e-07 Magnesium transporter MRS2-like
zf-C3HC4_2 PF13923 412 - 452 5.8e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 412 - 452 2.7e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 412 - 450 5.6e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39590
fragaria_vesca FvH4_2g38790 FvH4_2g38790
malus_domestica MD09G1232000.v1.1
prunus_persica Prupe.1G368700_v2.0.a1
pyrus_communis pycom09g15130
rosa_chinensis RchiOBHm_Chr6g0302501
rosa_laevigata RLG00000011167
rosa_multiflora Rmu_sc0011021.1_g000010 Rmu_sc0018485.1_g000004 Rmu_sc0042878.1_g000001
rosa_roxburghii Rroxscaffold_7G00165710
rosa_rugosa Rorug06G0314600
rosa_samantha Rh6AG427800 Rh6BG474900 Rh6CG439900 Rh6DG426900
rosa_wichuraiana Rw6G037000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1241
AccIII TCCGGA 1 cut(s) 1004
AciI CCGC 4 cut(s) 281, 1238, 1901, 2367
AclWI GGATC 4 cut(s) 188, 588, 1621, 1663
AcoI YGGCCR 2 cut(s) 112, 681
AcsI RAATTY 3 cut(s) 452, 1934, 2385
AcuI CTGAAG 3 cut(s) 617, 1461, 2178
AfaI GTAC 4 cut(s) 490, 1343, 1531, 2252
AfiI CCNNNNNNNGG 2 cut(s) 2050, 2329
AhlI ACTAGT 1 cut(s) 2276
AjiI CACGTC 1 cut(s) 838
AjnI CCWGG 3 cut(s) 382, 611, 1551
AjuI GAANNNNNNNTTGG 2 cut(s) 2109, 2141
Alw21I GWGCWC 5 cut(s) 261, 742, 1092, 1462, 2433
Alw26I GTCTC 5 cut(s) 41, 756, 1205, 1866, 2239
Alw44I GTGCAC 1 cut(s) 1458
AlwI GGATC 4 cut(s) 188, 588, 1621, 1663
Ama87I CYCGRG 4 cut(s) 21, 174, 860, 2432
Aor13HI TCCGGA 1 cut(s) 1004
AoxI GGCC 8 cut(s) 112, 379, 681, 864, 1263, 1394, 1422, 1724
ApaLI GTGCAC 1 cut(s) 1458
ApeKI GCWGC 5 cut(s) 77, 322, 910, 1040, 2099
ApoI RAATTY 3 cut(s) 452, 1934, 2385
Asp700I GAANNNNTTC 3 cut(s) 1284, 1597, 2449
AspLEI GCGC 2 cut(s) 156, 1133
AspS9I GGNCC 8 cut(s) 30, 103, 301, 380, 1422, 1635, 1854, 2129
AsuC2I CCSGG 3 cut(s) 403, 458, 1691
AsuHPI GGTGA 4 cut(s) 711, 1120, 1207, 2364
AvaI CYCGRG 4 cut(s) 21, 174, 860, 2432
AvaII GGWCC 6 cut(s) 30, 103, 301, 1635, 1854, 2129
BaeGI GKGCMC 1 cut(s) 1462
BalI TGGCCA 1 cut(s) 114
BanII GRGCYC 2 cut(s) 1700, 2041
BbsI GAAGAC 3 cut(s) 77, 402, 1277
Bbv12I GWGCWC 5 cut(s) 261, 742, 1092, 1462, 2433
BbvI GCAGC 5 cut(s) 89, 309, 897, 1027, 2111
BccI CCATC 5 cut(s) 20, 104, 1793, 2213, 2419
BciT130I CCWGG 3 cut(s) 384, 613, 1553
BciVI GTATCC 2 cut(s) 799, 1771
BcnI CCSGG 3 cut(s) 403, 458, 1691
BcoDI GTCTC 5 cut(s) 41, 756, 1205, 1866, 2239
BcuI ACTAGT 1 cut(s) 2276
BfaI CTAG 9 cut(s) 35, 476, 518, 986, 1491, 1617, 2147, 2267, 2277
BfmI CTRYAG 2 cut(s) 75, 2058
BfuAI ACCTGC 1 cut(s) 1241
BfuI GTATCC 2 cut(s) 799, 1771
BglI GCCNNNNNGGC 1 cut(s) 803
BglII AGATCT 2 cut(s) 178, 2269
BisI GCNGC 6 cut(s) 78, 323, 911, 1041, 1902, 2100
BlsI GCNGC 6 cut(s) 79, 324, 912, 1042, 1903, 2101
BmcAI AGTACT 1 cut(s) 1343
Bme1390I CCNGG 6 cut(s) 384, 403, 458, 613, 1553, 1691
Bme18I GGWCC 6 cut(s) 30, 103, 301, 1635, 1854, 2129
BmeT110I CYCGRG 4 cut(s) 21, 174, 860, 2432
BmgBI CACGTC 1 cut(s) 838
BmgT120I GGNCC 8 cut(s) 30, 103, 301, 380, 1422, 1635, 1854, 2129
BmiI GGNNCC 6 cut(s) 31, 32, 121, 302, 303, 2404
BmrFI CCNGG 6 cut(s) 384, 403, 458, 613, 1553, 1691
BmsI GCATC 6 cut(s) 490, 517, 1142, 2086, 2378, 2402
BpiI GAAGAC 3 cut(s) 77, 402, 1277
BplI GAGNNNNNCTC 2 cut(s) 539, 571
Bpu10I CCTNAGC 1 cut(s) 296
BpuEI CTTGAG 3 cut(s) 42, 869, 1908
BpuMI CCSGG 3 cut(s) 403, 458, 1691
Bsa29I ATCGAT 1 cut(s) 1136
BsaAI YACGTR 1 cut(s) 1093
BsaBI GATNNNNATC 1 cut(s) 531
BsaI GGTCTC 1 cut(s) 756
BsaJI CCNNGG 5 cut(s) 115, 382, 1380, 1551, 1689
BsaWI WCCGGW 1 cut(s) 1004
BsaXI ACNNNNNCTCC 2 cut(s) 1981, 2011
Bsc4I CCNNNNNNNGG 2 cut(s) 2050, 2329
Bse118I RCCGGY 1 cut(s) 1486
Bse1I ACTGG 5 cut(s) 426, 1570, 2103, 2199, 2315
Bse3DI GCAATG 2 cut(s) 197, 612
Bse8I GATNNNNATC 1 cut(s) 531
BseAI TCCGGA 1 cut(s) 1004
BseBI CCWGG 3 cut(s) 384, 613, 1553
BseCI ATCGAT 1 cut(s) 1136
BseDI CCNNGG 5 cut(s) 115, 382, 1380, 1551, 1689
BseGI GGATG 8 cut(s) 532, 649, 948, 1804, 1981, 1993, 2101, 2393
BseJI GATNNNNATC 1 cut(s) 531
BseLI CCNNNNNNNGG 2 cut(s) 2050, 2329
BseMI GCAATG 2 cut(s) 197, 612
BseMII CTCAG 5 cut(s) 989, 1713, 1767, 2201, 2277
BseNI ACTGG 5 cut(s) 426, 1570, 2103, 2199, 2315
BseRI GAGGAG 3 cut(s) 299, 842, 857
BseSI GKGCMC 1 cut(s) 1462
BseXI GCAGC 5 cut(s) 89, 309, 897, 1027, 2111
BseYI CCCAGC 1 cut(s) 1748
BshFI GGCC 8 cut(s) 114, 381, 683, 866, 1265, 1396, 1424, 1726
BshVI ATCGAT 1 cut(s) 1136
BsiHKAI GWGCWC 5 cut(s) 261, 742, 1092, 1462, 2433
BsiHKCI CYCGRG 4 cut(s) 21, 174, 860, 2432
BsiSI CCGG 5 cut(s) 402, 457, 1005, 1487, 1691
BslFI GGGAC 4 cut(s) 16, 314, 727, 2322
BslI CCNNNNNNNGG 2 cut(s) 2050, 2329
BsmAI GTCTC 5 cut(s) 41, 756, 1205, 1866, 2239
BsmBI CGTCTC 1 cut(s) 1205
BsmFI GGGAC 4 cut(s) 16, 314, 727, 2322
BsnI GGCC 8 cut(s) 114, 381, 683, 866, 1265, 1396, 1424, 1726
Bso31I GGTCTC 1 cut(s) 756
BsoBI CYCGRG 4 cut(s) 21, 174, 860, 2432
Bsp1286I GDGCHC 7 cut(s) 261, 742, 1092, 1462, 1700, 2041, 2433
Bsp13I TCCGGA 1 cut(s) 1004
BspACI CCGC 4 cut(s) 281, 1238, 1901, 2367
BspANI GGCC 8 cut(s) 114, 381, 683, 866, 1265, 1396, 1424, 1726
BspCNI CTCAG 5 cut(s) 990, 1712, 1768, 2200, 2278
BspDI ATCGAT 1 cut(s) 1136
BspEI TCCGGA 1 cut(s) 1004
BspHI TCATGA 1 cut(s) 1084
BspLI GGNNCC 6 cut(s) 31, 32, 121, 302, 303, 2404
BspMAI CTGCAG 1 cut(s) 79
BspMI ACCTGC 1 cut(s) 1241
BspPI GGATC 4 cut(s) 188, 588, 1621, 1663
BspTNI GGTCTC 1 cut(s) 756
BsrDI GCAATG 2 cut(s) 197, 612
BsrFI RCCGGY 1 cut(s) 1486
BsrI ACTGG 5 cut(s) 426, 1570, 2103, 2199, 2315
BssAI RCCGGY 1 cut(s) 1486
BssECI CCNNGG 5 cut(s) 115, 382, 1380, 1551, 1689
BssT1I CCWWGG 2 cut(s) 115, 1380
Bst2UI CCWGG 3 cut(s) 384, 613, 1553
Bst4CI ACNGT 3 cut(s) 124, 820, 1012
Bst6I CTCTTC 3 cut(s) 593, 1323, 2116
BstAPI GCANNNNNTGC 2 cut(s) 1233, 1305
BstBAI YACGTR 1 cut(s) 1093
BstC8I GCNNGC 6 cut(s) 505, 799, 1225, 1238, 1488, 2041
BstDEI CTNAG 6 cut(s) 296, 998, 1699, 1776, 2187, 2286
BstF5I GGATG 8 cut(s) 532, 649, 948, 1804, 1981, 1993, 2101, 2393
BstHHI GCGC 2 cut(s) 156, 1133
BstMAI GTCTC 5 cut(s) 41, 756, 1205, 1866, 2239
BstNI CCWGG 3 cut(s) 384, 613, 1553
BstNSI RCATGY 1 cut(s) 1227
BstSCI CCNGG 6 cut(s) 382, 401, 456, 611, 1551, 1689
BstSFI CTRYAG 2 cut(s) 75, 2058
BstSLI GKGCMC 1 cut(s) 1462
BstV1I GCAGC 5 cut(s) 89, 309, 897, 1027, 2111
BstV2I GAAGAC 3 cut(s) 77, 402, 1277
BstX2I RGATCY 4 cut(s) 178, 1613, 1655, 2269
BstXI CCANNNNNNTGG 2 cut(s) 223, 1071
BstYI RGATCY 4 cut(s) 178, 1613, 1655, 2269
Bsu15I ATCGAT 1 cut(s) 1136
BsuI GTATCC 2 cut(s) 799, 1771
BsuRI GGCC 8 cut(s) 114, 381, 683, 866, 1265, 1396, 1424, 1726
BsuTUI ATCGAT 1 cut(s) 1136
BtrI CACGTC 1 cut(s) 838
BtsCI GGATG 8 cut(s) 532, 649, 948, 1804, 1981, 1993, 2101, 2393
BtsI GCAGTG 1 cut(s) 1481
BtsIMutI CAGTG 4 cut(s) 433, 1481, 2110, 2322
BveI ACCTGC 1 cut(s) 1241
Cac8I GCNNGC 6 cut(s) 505, 799, 1225, 1238, 1488, 2041
CciI TCATGA 1 cut(s) 1084
CfoI GCGC 2 cut(s) 156, 1133
Cfr10I RCCGGY 1 cut(s) 1486
Cfr13I GGNCC 8 cut(s) 30, 103, 301, 380, 1422, 1635, 1854, 2129
ClaI ATCGAT 1 cut(s) 1136
CsiI ACCWGGT 1 cut(s) 611
Csp6I GTAC 4 cut(s) 489, 1342, 1530, 2251
CviQI GTAC 4 cut(s) 489, 1342, 1530, 2251
DdeI CTNAG 6 cut(s) 296, 998, 1699, 1776, 2187, 2286
EaeI YGGCCR 2 cut(s) 112, 681
Eam1104I CTCTTC 3 cut(s) 593, 1323, 2116
EarI CTCTTC 3 cut(s) 593, 1323, 2116
Eco130I CCWWGG 2 cut(s) 115, 1380
Eco147I AGGCCT 2 cut(s) 866, 1396
Eco24I GRGCYC 2 cut(s) 1700, 2041
Eco31I GGTCTC 1 cut(s) 756
Eco47I GGWCC 6 cut(s) 30, 103, 301, 1635, 1854, 2129
Eco57I CTGAAG 3 cut(s) 617, 1461, 2178
Eco88I CYCGRG 4 cut(s) 21, 174, 860, 2432
EcoO109I RGGNCCY 2 cut(s) 30, 301
EcoRI GAATTC 2 cut(s) 452, 2385
EcoRII CCWGG 3 cut(s) 382, 611, 1551
EcoT14I CCWWGG 2 cut(s) 115, 1380
EcoT22I ATGCAT 2 cut(s) 1229, 2306
EcoT38I GRGCYC 2 cut(s) 1700, 2041
ErhI CCWWGG 2 cut(s) 115, 1380
Esp3I CGTCTC 1 cut(s) 1205
FalI AAGNNNNNCTT 2 cut(s) 1582, 1614
FaqI GGGAC 4 cut(s) 16, 314, 727, 2322
FauI CCCGC 1 cut(s) 1245
Fnu4HI GCNGC 6 cut(s) 78, 323, 911, 1041, 1902, 2100
FokI GGATG 8 cut(s) 539, 656, 935, 1811, 1980, 1988, 2108, 2380
FriOI GRGCYC 2 cut(s) 1700, 2041
Fsp4HI GCNGC 6 cut(s) 78, 323, 911, 1041, 1902, 2100
FspBI CTAG 9 cut(s) 35, 476, 518, 986, 1491, 1617, 2147, 2267, 2277
GlaI GCGC 2 cut(s) 155, 1132
GluI GCNGC 6 cut(s) 78, 323, 911, 1041, 1902, 2100
GsaI CCCAGC 1 cut(s) 1752
HaeIII GGCC 8 cut(s) 114, 381, 683, 866, 1265, 1396, 1424, 1726
HapII CCGG 5 cut(s) 402, 457, 1005, 1487, 1691
HhaI GCGC 2 cut(s) 156, 1133
Hin6I GCGC 2 cut(s) 154, 1131
HinP1I GCGC 2 cut(s) 154, 1131
HincII GTYRAC 3 cut(s) 163, 618, 2350
HindII GTYRAC 3 cut(s) 163, 618, 2350
HpaI GTTAAC 1 cut(s) 163
HpaII CCGG 5 cut(s) 402, 457, 1005, 1487, 1691
HphI GGTGA 4 cut(s) 711, 1120, 1207, 2364
Hpy166II GTNNAC 4 cut(s) 163, 618, 1460, 2350
Hpy8I GTNNAC 4 cut(s) 163, 618, 1460, 2350
HpyAV CCTTC 5 cut(s) 222, 878, 1485, 1563, 2162
HpyCH4III ACNGT 3 cut(s) 124, 820, 1012
HpyCH4IV ACGT 5 cut(s) 349, 837, 890, 1092, 1292
HpyF3I CTNAG 6 cut(s) 296, 998, 1699, 1776, 2187, 2286
HpySE526I ACGT 5 cut(s) 349, 837, 890, 1092, 1292
HspAI GCGC 2 cut(s) 154, 1131
KflI GGGWCCC 2 cut(s) 30, 301
Kpn2I TCCGGA 1 cut(s) 1004
KroI GCCGGC 1 cut(s) 1486
KroNI GCCGGC 1 cut(s) 1488
KspAI GTTAAC 1 cut(s) 163
LmnI GCTCC 5 cut(s) 87, 256, 745, 844, 1691
Lsp1109I GCAGC 5 cut(s) 89, 309, 897, 1027, 2111
LweI GCATC 6 cut(s) 490, 517, 1142, 2086, 2378, 2402
MabI ACCWGGT 1 cut(s) 611
MaeI CTAG 9 cut(s) 35, 476, 518, 986, 1491, 1617, 2147, 2267, 2277
MaeII ACGT 5 cut(s) 349, 837, 890, 1092, 1292
MaeIII GTNAC 5 cut(s) 405, 728, 811, 2074, 2317
MflI RGATCY 4 cut(s) 178, 1613, 1655, 2269
MhlI GDGCHC 7 cut(s) 261, 742, 1092, 1462, 1700, 2041, 2433
MlsI TGGCCA 1 cut(s) 114
MluNI TGGCCA 1 cut(s) 114
MlyI GAGTC 3 cut(s) 43, 392, 725
MmeI TCCRAC 1 cut(s) 383
Mox20I TGGCCA 1 cut(s) 114
Mph1103I ATGCAT 2 cut(s) 1229, 2306
MroI TCCGGA 1 cut(s) 1004
MroNI GCCGGC 1 cut(s) 1486
MroXI GAANNNNTTC 3 cut(s) 1284, 1597, 2449
MscI TGGCCA 1 cut(s) 114
MseI TTAA 7 cut(s) 39, 83, 162, 945, 1391, 1641, 2207
MslI CAYNNNNRTG 1 cut(s) 1069
Msp20I TGGCCA 1 cut(s) 114
MspA1I CMGCKG 2 cut(s) 281, 1240
MspI CCGG 5 cut(s) 402, 457, 1005, 1487, 1691
MspR9I CCNGG 6 cut(s) 384, 403, 458, 613, 1553, 1691
MvaI CCWGG 3 cut(s) 384, 613, 1553
NaeI GCCGGC 1 cut(s) 1488
NciI CCSGG 3 cut(s) 403, 458, 1691
NgoMIV GCCGGC 1 cut(s) 1486
NlaIV GGNNCC 6 cut(s) 31, 32, 121, 302, 303, 2404
NmeAIII GCCGAG 3 cut(s) 182, 1144, 1752
NmuCI GTSAC 2 cut(s) 728, 2317
NsiI ATGCAT 2 cut(s) 1229, 2306
NspI RCATGY 1 cut(s) 1227
PaeI GCATGC 1 cut(s) 1227
PaeR7I CTCGAG 3 cut(s) 21, 174, 860
PagI TCATGA 1 cut(s) 1084
PceI AGGCCT 2 cut(s) 866, 1396
PdiI GCCGGC 1 cut(s) 1488
PdmI GAANNNNTTC 3 cut(s) 1284, 1597, 2449
PfeI GAWTC 7 cut(s) 970, 1186, 1772, 1790, 2066, 2177, 2191
PflFI GACNNNGTC 1 cut(s) 1858
PkrI GCNGC 6 cut(s) 79, 324, 912, 1042, 1903, 2101
PleI GAGTC 3 cut(s) 43, 392, 725
PpsI GAGTC 3 cut(s) 43, 392, 725
Ppu21I YACGTR 1 cut(s) 1093
PpuMI RGGWCCY 2 cut(s) 30, 301
Psp5II RGGWCCY 2 cut(s) 30, 301
Psp6I CCWGG 3 cut(s) 382, 611, 1551
PspFI CCCAGC 1 cut(s) 1748
PspGI CCWGG 3 cut(s) 382, 611, 1551
PspN4I GGNNCC 6 cut(s) 31, 32, 121, 302, 303, 2404
PspPI GGNCC 8 cut(s) 30, 103, 301, 380, 1422, 1635, 1854, 2129
PspPPI RGGWCCY 2 cut(s) 30, 301
PspXI VCTCGAGB 1 cut(s) 860
PsrI GAACNNNNNNTAC 2 cut(s) 804, 836
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 4 cut(s) 178, 1613, 1655, 2269
PsyI GACNNNGTC 1 cut(s) 1858
RsaI GTAC 4 cut(s) 490, 1343, 1531, 2252
RsaNI GTAC 4 cut(s) 489, 1342, 1530, 2251
RseI CAYNNNNRTG 1 cut(s) 1069
SaqAI TTAA 7 cut(s) 39, 83, 162, 945, 1391, 1641, 2207
SatI GCNGC 6 cut(s) 78, 323, 911, 1041, 1902, 2100
Sau96I GGNCC 8 cut(s) 30, 103, 301, 380, 1422, 1635, 1854, 2129
ScaI AGTACT 1 cut(s) 1343
SchI GAGTC 3 cut(s) 43, 392, 725
ScrFI CCNGG 6 cut(s) 384, 403, 458, 613, 1553, 1691
SduI GDGCHC 7 cut(s) 261, 742, 1092, 1462, 1700, 2041, 2433
SexAI ACCWGGT 1 cut(s) 611
SfaNI GCATC 6 cut(s) 490, 517, 1142, 2086, 2378, 2402
SfcI CTRYAG 2 cut(s) 75, 2058
Sfr274I CTCGAG 3 cut(s) 21, 174, 860
SinI GGWCC 6 cut(s) 30, 103, 301, 1635, 1854, 2129
SlaI CTCGAG 3 cut(s) 21, 174, 860
SmiMI CAYNNNNRTG 1 cut(s) 1069
SmlI CTYRAG 6 cut(s) 21, 57, 174, 848, 860, 1923
SmoI CTYRAG 6 cut(s) 21, 57, 174, 848, 860, 1923
SpeI ACTAGT 1 cut(s) 2276
SphI GCATGC 1 cut(s) 1227
SseBI AGGCCT 2 cut(s) 866, 1396
SsiI CCGC 4 cut(s) 281, 1238, 1901, 2367
SspI AATATT 1 cut(s) 1047
SspMI CTAG 9 cut(s) 35, 476, 518, 986, 1491, 1617, 2147, 2267, 2277
StuI AGGCCT 2 cut(s) 866, 1396
StyD4I CCNGG 6 cut(s) 382, 401, 456, 611, 1551, 1689
StyI CCWWGG 2 cut(s) 115, 1380
TaaI ACNGT 3 cut(s) 124, 820, 1012
TaiI ACGT 5 cut(s) 352, 840, 893, 1095, 1295
TaqI TCGA 7 cut(s) 22, 175, 651, 861, 1136, 1184, 2443
TaqII GACCGA 1 cut(s) 1376
TatI WGTACW 2 cut(s) 488, 1341
TauI GCSGC 1 cut(s) 1904
TfiI GAWTC 7 cut(s) 970, 1186, 1772, 1790, 2066, 2177, 2191
Tru1I TTAA 7 cut(s) 39, 83, 162, 945, 1391, 1641, 2207
Tru9I TTAA 7 cut(s) 39, 83, 162, 945, 1391, 1641, 2207
TscAI CASTG 4 cut(s) 433, 1488, 2110, 2322
TseFI GTSAC 2 cut(s) 728, 2317
TseI GCWGC 5 cut(s) 77, 322, 910, 1040, 2099
Tsp45I GTSAC 2 cut(s) 728, 2317
TspDTI ATGAA 6 cut(s) 87, 660, 1070, 1277, 1932, 1992
TspGWI ACGGA 3 cut(s) 1340, 1627, 1668
TspRI CASTG 4 cut(s) 433, 1488, 2110, 2322
Tth111I GACNNNGTC 1 cut(s) 1858
VneI GTGCAC 1 cut(s) 1458
VpaK11BI GGWCC 6 cut(s) 30, 103, 301, 1635, 1854, 2129
XapI RAATTY 3 cut(s) 452, 1934, 2385
XceI RCATGY 1 cut(s) 1227
XhoI CTCGAG 3 cut(s) 21, 174, 860
XmnI GAANNNNTTC 3 cut(s) 1284, 1597, 2449
XspI CTAG 9 cut(s) 35, 476, 518, 986, 1491, 1617, 2147, 2267, 2277
ZrmI AGTACT 1 cut(s) 1343
Zsp2I ATGCAT 2 cut(s) 1229, 2306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.