Rh6DG426900

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0013334
Physical Location & Seq
Reverse (-)
60762971 .. 60765778
2808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG426900.1

Sequence Viewer

Length: 1611 bp
ATGGGAGCGTCATCTTCGTCAGAGCAGACGGTTCCGATTGAGCAACGAGAGGCCGAAACCCTAGCAGCCTCCACCGGAGCTCTTTCTACGCTTCACAAGTGTTTCTCTGACCTCGCCGATCCTCACTCCGGTGCTATTCCCTTCGACTCTCTTCAGCAATGCTTTCGGTTAAGTTACGAGAATCCGGTATGCGAAGGTCTTGGAATTCAGGTATCATTTCCGGGAGTGCTGGATCATGTTGGATGCTGCATAGCGGAGCTGTTTTTCGTGACGGAAAAAGGGGGAGTGAGTTGGATTGAGTTCGTTAGAGGTTACAATAGGTGTTGTGCAAGAAGGACTTTGTCCATGTCTGTTACTACTTTGCTGAGAGTGTTCAGTGTGGCACTTAATAAAGCCGGTTTGCCTTGTAATTTGGAATTTGAAACTGGTGCTGATGATTGTAAGATTAGCGGGTGGCTTATGCCTGTGGATGTGCTTATGCTTCTTTGGATGTGTTGGGCCATGTCCTGGTATTCTAGGACTAGAGAATTTCCGAAAGAGAAAGGGAAGTTGTGTCTGCCGGATGTTAAGCATATTGTGTTGTCGGCTATTGAATCATGTGCCGAAGCTGAAAGTGGACTGAATGTTTGGGACTGTGAGCTTTCGGGTTTGGAAGTTCAACTTCCTGTGGGGAGGTTTCTTACTTGGGTTTTGAAGACAGTGCCTACTCTCCCTGGTTGCTTTACCGAGTTTGTGTATGCAGTACTCAAACATTCTGCTTCTCAAGAGGCTGGATCGGAATGTTCGACTTCATCAGCTGCAGATACTTCGTCAACTGTGGCATGCAGTTCTAATCTTTTGTCCCCTGGAATAGCCTGGGCTATTTCCCTCACACTAACAGGCCCTCTAAGTGAAGAGATCTCAAGGGCATGCTTCCCTTCAGATGCTAATGGAATAAATAATGACCTACTTTACAGGTCACATCTTCATGGGAGAGGGTTGAATAGATTCTGGTCTAATGTTCAAGGTTACCAAGGTCCACTGCTTGTTCTGATTTCTGCAACCTCAGAAGATGGTAGTGCCAATAAAAGAAATTGGATTGTAGGTGTTCTCACACATCAAGGTTTTGAGAATAGGGATCTCTTCTATGGAAGTTCAGGAAGTCTGTACGCTATAAGTCCAGTCTTTCATGTGTATCAACCTACTGGAAAGGAAAGGAACTTTGTGTATAGCCATCTCCATCCCACTGGCAGGGTGTATGAGGTGAAACCGAAGCCTGTTGGAATAGGATTTGGTGGAACTCTGGGAAATGAGAGAATTTATGTGGATGAAGATTTTTCTAAGGTTACCATTCGCCATCATGCAGCTGACAAAACTTATCAGTCTGGCTCCCTCTTTCCTGATCAGGGCTTTCTACCTGTTGAAGCTTTGATCACAGAAGTTGAAATTTGGGGACTTGGTGGGAGGGGCGCAAAGGATGTGCAGGATTCATATAAGAATAGGGAACAACTTTTCACTGAGCAAAGACGAAAGGTTGACTTGAAAACATTTGCAAACTGGGAGGATTCACCTGAAAAGATGATGAAGGACATGGTCTCCAACCCCAATGCAGTTCGACGTGAAGACCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

536

Amino Acids

59.14

Weight (kDa)

5.62

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 302 - 480 2.3e-25 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39590
fragaria_vesca FvH4_2g38790 FvH4_2g38790
malus_domestica MD09G1232000.v1.1
prunus_persica Prupe.1G368700_v2.0.a1
pyrus_communis pycom09g15130
rosa_chinensis RchiOBHm_Chr6g0302501
rosa_laevigata RLG00000011167
rosa_multiflora Rmu_sc0011021.1_g000010 Rmu_sc0018485.1_g000004 Rmu_sc0042878.1_g000001
rosa_roxburghii Rroxscaffold_7G00165710
rosa_rugosa Rorug06G0314600
rosa_samantha Rh6AG427800 Rh6BG474900 Rh6CG439900 Rh6DG426900
rosa_wichuraiana Rw6G037000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 507
AciI CCGC 3 cut(s) 254, 450, 1606
AclWI GGATC 4 cut(s) 113, 240, 781, 1125
AcsI RAATTY 5 cut(s) 204, 416, 527, 1296, 1425
AcuI CTGAAG 2 cut(s) 137, 903
AfaI GTAC 2 cut(s) 744, 1148
AfiI CCNNNNNNNGG 4 cut(s) 128, 507, 1230, 1385
AgsI TTSAA 9 cut(s) 422, 593, 659, 694, 982, 1004, 1403, 1424, 1522
AjiI CACGTC 1 cut(s) 1598
AjnI CCWGG 4 cut(s) 506, 712, 844, 854
AleI CACNNNNGTG 1 cut(s) 129
AluBI AGCT 7 cut(s) 80, 259, 608, 640, 797, 1346, 1406
AluI AGCT 7 cut(s) 80, 259, 608, 640, 797, 1346, 1406
Alw21I GWGCWC 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 1579
AlwI GGATC 4 cut(s) 113, 240, 781, 1125
AoxI GGCC 3 cut(s) 51, 498, 880
ApeKI GCWGC 4 cut(s) 65, 246, 797, 1343
ApoI RAATTY 5 cut(s) 204, 416, 527, 1296, 1425
ArsI GACNNNNNNTTYG 2 cut(s) 609, 641
Asp700I GAANNNNTTC 1 cut(s) 986
AspLEI GCGC 1 cut(s) 1451
AspS9I GGNCC 3 cut(s) 498, 881, 1016
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 2 cut(s) 1255, 1539
AvaII GGWCC 1 cut(s) 1016
BanII GRGCYC 1 cut(s) 82
BbsI GAAGAC 1 cut(s) 701
Bbv12I GWGCWC 1 cut(s) 82
BbvI GCAGC 4 cut(s) 77, 233, 784, 1355
BccI CCATC 4 cut(s) 1046, 1221, 1227, 1344
BcgI CGANNNNNNTGC 4 cut(s) 146, 180, 789, 823
BciT130I CCWGG 4 cut(s) 508, 714, 846, 856
BclI TGATCA 2 cut(s) 1381, 1410
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 1579
BfaI CTAG 3 cut(s) 62, 516, 522
BfmI CTRYAG 1 cut(s) 798
BglII AGATCT 1 cut(s) 897
BisI GCNGC 4 cut(s) 66, 247, 798, 1344
BlsI GCNGC 4 cut(s) 67, 248, 799, 1345
BmcAI AGTACT 1 cut(s) 744
Bme1390I CCNGG 5 cut(s) 222, 508, 714, 846, 856
Bme18I GGWCC 1 cut(s) 1016
BmgBI CACGTC 1 cut(s) 1598
BmgT120I GGNCC 3 cut(s) 498, 881, 1016
BmiI GGNNCC 2 cut(s) 33, 1369
BmrFI CCNGG 5 cut(s) 222, 508, 714, 846, 856
BmrI ACTGGG 1 cut(s) 1546
BmsI GCATC 2 cut(s) 233, 913
BmuI ACTGGG 1 cut(s) 1546
BpiI GAAGAC 1 cut(s) 701
BpuEI CTTGAG 2 cut(s) 747, 886
BpuMI CCSGG 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 1579
BsaJI CCNNGG 4 cut(s) 712, 844, 855, 1012
BsaWI WCCGGW 3 cut(s) 74, 128, 184
BsaXI ACNNNNNCTCC 2 cut(s) 1559, 1589
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 507, 1230, 1385
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 5 cut(s) 430, 1160, 1189, 1231, 1541
Bse3DI GCAATG 1 cut(s) 164
BseBI CCWGG 4 cut(s) 508, 714, 846, 856
BseDI CCNNGG 4 cut(s) 712, 844, 855, 1012
BseGI GGATG 7 cut(s) 248, 475, 495, 568, 1219, 1312, 1462
BseLI CCNNNNNNNGG 4 cut(s) 128, 507, 1230, 1385
BseMI GCAATG 1 cut(s) 164
BseMII CTCAG 3 cut(s) 356, 1059, 1488
BseNI ACTGG 5 cut(s) 430, 1160, 1189, 1231, 1541
BseXI GCAGC 4 cut(s) 77, 233, 784, 1355
BsgI GTGCAG 1 cut(s) 1481
BshFI GGCC 3 cut(s) 53, 500, 882
BsiHKAI GWGCWC 1 cut(s) 82
BsiSI CCGG 6 cut(s) 75, 129, 185, 221, 396, 560
BslFI GGGAC 3 cut(s) 644, 826, 1446
BslI CCNNNNNNNGG 4 cut(s) 128, 507, 1230, 1385
BsmAI GTCTC 1 cut(s) 1579
BsmFI GGGAC 3 cut(s) 644, 826, 1446
BsnI GGCC 3 cut(s) 53, 500, 882
Bso31I GGTCTC 1 cut(s) 1579
Bsp1286I GDGCHC 1 cut(s) 82
Bsp143I GATC 7 cut(s) 118, 232, 773, 897, 1117, 1381, 1410
BspACI CCGC 3 cut(s) 254, 450, 1606
BspANI GGCC 3 cut(s) 53, 500, 882
BspCNI CTCAG 3 cut(s) 357, 1058, 1489
BspLI GGNNCC 2 cut(s) 33, 1369
BspMAI CTGCAG 1 cut(s) 802
BspPI GGATC 4 cut(s) 113, 240, 781, 1125
BspTNI GGTCTC 1 cut(s) 1579
BsrDI GCAATG 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 395
BsrI ACTGG 5 cut(s) 430, 1160, 1189, 1231, 1541
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 4 cut(s) 712, 844, 855, 1012
BssMI GATC 7 cut(s) 118, 232, 773, 897, 1117, 1381, 1410
BssT1I CCWWGG 1 cut(s) 1012
Bst2UI CCWGG 4 cut(s) 508, 714, 846, 856
Bst4CI ACNGT 4 cut(s) 31, 635, 700, 817
Bst6I CTCTTC 3 cut(s) 156, 888, 1127
BstC8I GCNNGC 2 cut(s) 823, 910
BstDEI CTNAG 5 cut(s) 365, 887, 1045, 1320, 1497
BstEII GGTNACC 2 cut(s) 1007, 1324
BstF5I GGATG 7 cut(s) 248, 475, 495, 568, 1219, 1312, 1462
BstHHI GCGC 1 cut(s) 1451
BstKTI GATC 7 cut(s) 121, 235, 776, 900, 1120, 1384, 1413
BstMAI GTCTC 1 cut(s) 1579
BstMBI GATC 7 cut(s) 118, 232, 773, 897, 1117, 1381, 1410
BstNI CCWGG 4 cut(s) 508, 714, 846, 856
BstNSI RCATGY 2 cut(s) 825, 912
BstPI GGTNACC 2 cut(s) 1007, 1324
BstSCI CCNGG 5 cut(s) 220, 506, 712, 844, 854
BstSFI CTRYAG 1 cut(s) 798
BstV1I GCAGC 4 cut(s) 77, 233, 784, 1355
BstV2I GAAGAC 1 cut(s) 701
BstX2I RGATCY 2 cut(s) 897, 1117
BstXI CCANNNNNNTGG 1 cut(s) 1226
BstYI RGATCY 2 cut(s) 897, 1117
BsuRI GGCC 3 cut(s) 53, 500, 882
BtrI CACGTC 1 cut(s) 1598
BtsCI GGATG 7 cut(s) 248, 475, 495, 568, 1219, 1312, 1462
BtsI GCAGTG 1 cut(s) 1019
BtsIMutI CAGTG 5 cut(s) 382, 705, 1019, 1224, 1494
Cac8I GCNNGC 2 cut(s) 823, 910
CfoI GCGC 1 cut(s) 1451
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 3 cut(s) 498, 881, 1016
Csp6I GTAC 2 cut(s) 743, 1147
CviQI GTAC 2 cut(s) 743, 1147
DdeI CTNAG 5 cut(s) 365, 887, 1045, 1320, 1497
DpnI GATC 7 cut(s) 120, 234, 775, 899, 1119, 1383, 1412
DpnII GATC 7 cut(s) 118, 232, 773, 897, 1117, 1381, 1410
Eam1104I CTCTTC 3 cut(s) 156, 888, 1127
EarI CTCTTC 3 cut(s) 156, 888, 1127
Ecl136II GAGCTC 1 cut(s) 80
Eco130I CCWWGG 1 cut(s) 1012
Eco24I GRGCYC 1 cut(s) 82
Eco31I GGTCTC 1 cut(s) 1579
Eco47I GGWCC 1 cut(s) 1016
Eco53kI GAGCTC 1 cut(s) 80
Eco57I CTGAAG 2 cut(s) 137, 903
Eco91I GGTNACC 2 cut(s) 1007, 1324
EcoICRI GAGCTC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 881
EcoO65I GGTNACC 2 cut(s) 1007, 1324
EcoRI GAATTC 1 cut(s) 204
EcoRII CCWGG 4 cut(s) 506, 712, 844, 854
EcoT14I CCWWGG 1 cut(s) 1012
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 1 cut(s) 1012
FalI AAGNNNNNCTT 6 cut(s) 322, 354, 645, 677, 1502, 1534
FaqI GGGAC 3 cut(s) 644, 826, 1446
FauI CCCGC 1 cut(s) 443
FbaI TGATCA 2 cut(s) 1381, 1410
Fnu4HI GCNGC 4 cut(s) 66, 247, 798, 1344
FokI GGATG 7 cut(s) 255, 482, 502, 575, 1206, 1319, 1469
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 4 cut(s) 66, 247, 798, 1344
FspBI CTAG 3 cut(s) 62, 516, 522
GlaI GCGC 1 cut(s) 1450
GluI GCNGC 4 cut(s) 66, 247, 798, 1344
HaeIII GGCC 3 cut(s) 53, 500, 882
HapII CCGG 6 cut(s) 75, 129, 185, 221, 396, 560
HhaI GCGC 1 cut(s) 1451
Hin6I GCGC 1 cut(s) 1449
HinP1I GCGC 1 cut(s) 1449
HincII GTYRAC 2 cut(s) 813, 1516
HindII GTYRAC 2 cut(s) 813, 1516
HindIII AAGCTT 1 cut(s) 1404
HinfI GANTC 6 cut(s) 146, 181, 593, 987, 1466, 1544
HpaII CCGG 6 cut(s) 75, 129, 185, 221, 396, 560
HphI GGTGA 2 cut(s) 1255, 1539
Hpy166II GTNNAC 4 cut(s) 617, 813, 1019, 1516
Hpy188I TCNGA 8 cut(s) 22, 36, 109, 534, 778, 922, 1032, 1048
Hpy188III TCNNGA 4 cut(s) 268, 764, 1137, 1379
Hpy8I GTNNAC 4 cut(s) 617, 813, 1019, 1516
Hpy99I CGWCG 1 cut(s) 1599
HpyAV CCTTC 5 cut(s) 151, 188, 327, 927, 1558
HpyCH4III ACNGT 4 cut(s) 31, 635, 700, 817
HpyCH4IV ACGT 1 cut(s) 1597
HpyF3I CTNAG 5 cut(s) 365, 887, 1045, 1320, 1497
HpySE526I ACGT 1 cut(s) 1597
HspAI GCGC 1 cut(s) 1449
Ksp22I TGATCA 2 cut(s) 1381, 1410
Kzo9I GATC 7 cut(s) 118, 232, 773, 897, 1117, 1381, 1410
LmnI GCTCC 4 cut(s) 5, 77, 256, 1373
Lsp1109I GCAGC 4 cut(s) 77, 233, 784, 1355
LweI GCATC 2 cut(s) 233, 913
MaeI CTAG 3 cut(s) 62, 516, 522
MaeII ACGT 1 cut(s) 1597
MaeIII GTNAC 7 cut(s) 173, 268, 311, 352, 957, 1007, 1324
MalI GATC 7 cut(s) 120, 234, 775, 899, 1119, 1383, 1412
MboI GATC 7 cut(s) 118, 232, 773, 897, 1117, 1381, 1410
MboII GAAGA 8 cut(s) 6, 143, 706, 905, 956, 1061, 1114, 1322
MflI RGATCY 2 cut(s) 897, 1117
MhlI GDGCHC 1 cut(s) 82
MluCI AATT 7 cut(s) 204, 409, 416, 527, 1072, 1296, 1425
MlyI GAGTC 1 cut(s) 140
MmeI TCCRAC 4 cut(s) 220, 272, 1240, 1602
MroXI GAANNNNTTC 1 cut(s) 986
MseI TTAA 3 cut(s) 170, 387, 567
MslI CAYNNNNRTG 2 cut(s) 129, 966
MspA1I CMGCKG 2 cut(s) 797, 1346
MspI CCGG 6 cut(s) 75, 129, 185, 221, 396, 560
MspR9I CCNGG 5 cut(s) 222, 508, 714, 846, 856
MvaI CCWGG 4 cut(s) 508, 714, 846, 856
NciI CCSGG 1 cut(s) 222
NdeII GATC 7 cut(s) 118, 232, 773, 897, 1117, 1381, 1410
NlaIV GGNNCC 2 cut(s) 33, 1369
NmuCI GTSAC 2 cut(s) 268, 957
NspI RCATGY 2 cut(s) 825, 912
OliI CACNNNNGTG 1 cut(s) 129
PaeI GCATGC 2 cut(s) 825, 912
PcsI WCGNNNNNNNCGW 1 cut(s) 782
PdmI GAANNNNTTC 1 cut(s) 986
PfeI GAWTC 5 cut(s) 181, 593, 987, 1466, 1544
PflFI GACNNNGTC 2 cut(s) 340, 1571
PflMI CCANNNNNTGG 1 cut(s) 507
PfoI TCCNGGA 1 cut(s) 220
PkrI GCNGC 4 cut(s) 67, 248, 799, 1345
PleI GAGTC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 140
Psp124BI GAGCTC 1 cut(s) 82
Psp6I CCWGG 4 cut(s) 506, 712, 844, 854
PspEI GGTNACC 2 cut(s) 1007, 1324
PspGI CCWGG 4 cut(s) 506, 712, 844, 854
PspN4I GGNNCC 2 cut(s) 33, 1369
PspPI GGNCC 3 cut(s) 498, 881, 1016
PstI CTGCAG 1 cut(s) 802
PsuI RGATCY 2 cut(s) 897, 1117
PsyI GACNNNGTC 2 cut(s) 340, 1571
PvuII CAGCTG 2 cut(s) 797, 1346
RsaI GTAC 2 cut(s) 744, 1148
RsaNI GTAC 2 cut(s) 743, 1147
RseI CAYNNNNRTG 2 cut(s) 129, 966
SacI GAGCTC 1 cut(s) 82
SaqAI TTAA 3 cut(s) 170, 387, 567
SatI GCNGC 4 cut(s) 66, 247, 798, 1344
Sau3AI GATC 7 cut(s) 118, 232, 773, 897, 1117, 1381, 1410
Sau96I GGNCC 3 cut(s) 498, 881, 1016
ScaI AGTACT 1 cut(s) 744
SchI GAGTC 1 cut(s) 140
ScrFI CCNGG 5 cut(s) 222, 508, 714, 846, 856
SduI GDGCHC 1 cut(s) 82
SfaNI GCATC 2 cut(s) 233, 913
SfcI CTRYAG 1 cut(s) 798
SinI GGWCC 1 cut(s) 1016
SmiMI CAYNNNNRTG 2 cut(s) 129, 966
SmlI CTYRAG 2 cut(s) 762, 901
SmoI CTYRAG 2 cut(s) 762, 901
SphI GCATGC 2 cut(s) 825, 912
Sse9I AATT 7 cut(s) 204, 409, 416, 527, 1072, 1296, 1425
SsiI CCGC 3 cut(s) 254, 450, 1606
SspMI CTAG 3 cut(s) 62, 516, 522
SstI GAGCTC 1 cut(s) 82
StyD4I CCNGG 5 cut(s) 220, 506, 712, 844, 854
StyI CCWWGG 1 cut(s) 1012
TaaI ACNGT 4 cut(s) 31, 635, 700, 817
TaiI ACGT 1 cut(s) 1600
TaqI TCGA 3 cut(s) 144, 785, 1594
TasI AATT 7 cut(s) 204, 409, 416, 527, 1072, 1296, 1425
TatI WGTACW 1 cut(s) 742
TfiI GAWTC 5 cut(s) 181, 593, 987, 1466, 1544
Tru1I TTAA 3 cut(s) 170, 387, 567
Tru9I TTAA 3 cut(s) 170, 387, 567
TscAI CASTG 5 cut(s) 382, 705, 1026, 1231, 1501
TseFI GTSAC 2 cut(s) 268, 957
TseI GCWGC 4 cut(s) 65, 246, 797, 1343
Tsp45I GTSAC 2 cut(s) 268, 957
TspDTI ATGAA 6 cut(s) 780, 956, 1157, 1323, 1458, 1577
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 5 cut(s) 382, 705, 1026, 1231, 1501
Tth111I GACNNNGTC 2 cut(s) 340, 1571
Van91I CCANNNNNTGG 1 cut(s) 507
VpaK11BI GGWCC 1 cut(s) 1016
XapI RAATTY 5 cut(s) 204, 416, 527, 1296, 1425
XceI RCATGY 2 cut(s) 825, 912
XmnI GAANNNNTTC 1 cut(s) 986
XspI CTAG 3 cut(s) 62, 516, 522
ZrmI AGTACT 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.