Rh6CG439900

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0013334
Physical Location & Seq
Reverse (-)
61970353 .. 61973825
3473 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG439900.1

Sequence Viewer

Length: 1245 bp
ATGGGAGCGTCATCTTCGTCAGAGCAGACGACGGTTCCGATTGAGCAACGAGAGGCCGAAACCCTAGCAGCCTCCACCGGAGCTCTTTCTACGCTTCAGAAGTGTTTCTCTAACCTCGCCGATCCTCACTCCGGTGCTATTCCCTACGACTCTCTTCAGCAATGTTTTCGGTTAAGTTACGAGAATCCGGTATGCGAAGGTCTTGCAATTCCGGTATCATTTCCGGGAGTGCTGGATCATGTTGGATGCTGCATAGCGGAGCTGTTTTTCGTGACGGAAAAAGGGGGAGTGAGTTGGATTGAGTTCGTTAGAGGTTACAATAGGTGTTGTGCAAGAAAGACTTTGTCCATGTCTGTCACTAGTTTGCTGAGAGTGTTTAGTGTGGCACTTAAGAAAGCCGGTTTGCCTTGTAATTTGGAATTTGAAACTGGTGATGATGATTGTAAGATTAGCGGGTGGCTTATGCCTGTGGATGTGCTTATGCTTCTTTGGATGTGTTGGGCCATGTCCTGGTATTCTAGGACTAGAGAATTTCCGAGAGAGAAAGGCAAGTTGTGTCTGCCGGATGTTAAGCATATTGTGTTGTCGGCTATTGAATCATGTGCCGAAGCTGAAAGTGGACTGAATGTTTGGGACTGTGAGCTTTCGGGTTTGGAAGTTCGACTTCCTGTGGGGAAGTTTCTTACTTGGGTTTTGAAGACAGTGTCTAGTCTCCCTGGTTGCTTTACCGAGTTTGTGTATGCAGTACTCAAACATTCTGCTTCTCAAGAGGCTGGACTGGAATGTTCGACTTCTTCAGCTGCAGTTACTTCGTCAACTGTGGCATGCAGTTCTAATCTTTTGACCCCTGGAATAGCCTGGGCTATTTCCCTCACACTAACAGGCCCTCTAAGTGAAGAGATCTCAAGGGCATGCTTCCCTTCAGATGCTAATGGAATAAATAATGACCTACTTTACAGGTCACATCTTCATGGGAGAGGGTTGAATAGATTCTGGTCTAATGTTCAAGGTTACCAAGGTCCACTGCTTGTTCTGATTTCTGCAACCTCAGAAGATGGTAGTGCCAATAAAAGAAATTGGATTGTAGGTGTTCTCACACATCAAGGTTTTGAGAATAGGGATCTCTTCTATGGAAGTTCAGGAAGTCTGTACGCTATAAGTCCAGTCTTTCATGTGTATCCACCTACTGGTATGCAAAGTGTTTGGAAAGGCGCTGCATTTCATTTCATAGAAATTGCTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

414

Amino Acids

45.11

Weight (kDa)

5.45

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 303 - 399 4.9e-11 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013334)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G39590
fragaria_vesca FvH4_2g38790 FvH4_2g38790
malus_domestica MD09G1232000.v1.1
prunus_persica Prupe.1G368700_v2.0.a1
pyrus_communis pycom09g15130
rosa_chinensis RchiOBHm_Chr6g0302501
rosa_laevigata RLG00000011167
rosa_multiflora Rmu_sc0011021.1_g000010 Rmu_sc0018485.1_g000004 Rmu_sc0042878.1_g000001
rosa_roxburghii Rroxscaffold_7G00165710
rosa_rugosa Rorug06G0314600
rosa_samantha Rh6AG427800 Rh6BG474900 Rh6CG439900 Rh6DG426900
rosa_wichuraiana Rw6G037000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 510, 1187
AciI CCGC 2 cut(s) 257, 453
AclWI GGATC 3 cut(s) 116, 243, 1128
AcsI RAATTY 2 cut(s) 419, 530
AcuI CTGAAG 4 cut(s) 80, 140, 780, 906
AfaI GTAC 2 cut(s) 747, 1151
AfiI CCNNNNNNNGG 3 cut(s) 131, 510, 1187
AflII CTTAAG 1 cut(s) 389
AgsI TTSAA 5 cut(s) 425, 596, 697, 985, 1007
AhlI ACTAGT 1 cut(s) 359
AjnI CCWGG 4 cut(s) 509, 715, 847, 857
AleI CACNNNNGTG 1 cut(s) 132
AluBI AGCT 5 cut(s) 83, 262, 611, 643, 800
AluI AGCT 5 cut(s) 83, 262, 611, 643, 800
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 716
AlwI GGATC 3 cut(s) 116, 243, 1128
AoxI GGCC 3 cut(s) 54, 501, 883
ApeKI GCWGC 4 cut(s) 68, 249, 800, 1214
ApoI RAATTY 2 cut(s) 419, 530
ArsI GACNNNNNNTTYG 2 cut(s) 612, 644
Asp700I GAANNNNTTC 2 cut(s) 104, 989
AspLEI GCGC 1 cut(s) 1214
AspS9I GGNCC 3 cut(s) 501, 884, 1019
AsuC2I CCSGG 1 cut(s) 225
AsuHPI GGTGA 1 cut(s) 443
AvaII GGWCC 1 cut(s) 1019
BanII GRGCYC 1 cut(s) 85
BbsI GAAGAC 1 cut(s) 704
Bbv12I GWGCWC 1 cut(s) 85
BbvI GCAGC 4 cut(s) 80, 236, 787, 1201
BccI CCATC 1 cut(s) 1049
BcgI CGANNNNNNTGC 6 cut(s) 149, 183, 185, 219, 792, 826
BciT130I CCWGG 4 cut(s) 511, 717, 849, 859
BciVI GTATCC 1 cut(s) 1188
BcnI CCSGG 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 716
BcuI ACTAGT 1 cut(s) 359
BfaI CTAG 5 cut(s) 65, 360, 519, 525, 708
BfmI CTRYAG 1 cut(s) 801
BfoI RGCGCY 1 cut(s) 1215
BfrI CTTAAG 1 cut(s) 389
BfuI GTATCC 1 cut(s) 1188
BglII AGATCT 1 cut(s) 900
BisI GCNGC 4 cut(s) 69, 250, 801, 1215
BlsI GCNGC 4 cut(s) 70, 251, 802, 1216
BmcAI AGTACT 1 cut(s) 747
Bme1390I CCNGG 5 cut(s) 225, 511, 717, 849, 859
Bme18I GGWCC 1 cut(s) 1019
BmgT120I GGNCC 3 cut(s) 501, 884, 1019
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 5 cut(s) 225, 511, 717, 849, 859
BmsI GCATC 2 cut(s) 236, 916
BpiI GAAGAC 1 cut(s) 704
BpuEI CTTGAG 2 cut(s) 750, 889
BpuMI CCSGG 1 cut(s) 225
BsaJI CCNNGG 4 cut(s) 715, 847, 858, 1015
BsaWI WCCGGW 4 cut(s) 77, 131, 187, 211
Bsc4I CCNNNNNNNGG 3 cut(s) 131, 510, 1187
Bse118I RCCGGY 1 cut(s) 398
Bse1I ACTGG 4 cut(s) 433, 783, 1163, 1192
Bse3DI GCAATG 1 cut(s) 167
BseBI CCWGG 4 cut(s) 511, 717, 849, 859
BseDI CCNNGG 4 cut(s) 715, 847, 858, 1015
BseGI GGATG 4 cut(s) 251, 478, 498, 571
BseLI CCNNNNNNNGG 3 cut(s) 131, 510, 1187
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 3 cut(s) 359, 1062, 1230
BseNI ACTGG 4 cut(s) 433, 783, 1163, 1192
BseXI GCAGC 4 cut(s) 80, 236, 787, 1201
BshFI GGCC 3 cut(s) 56, 503, 885
BsiHKAI GWGCWC 1 cut(s) 85
BsiSI CCGG 7 cut(s) 78, 132, 188, 212, 224, 399, 563
BslFI GGGAC 1 cut(s) 647
BslI CCNNNNNNNGG 3 cut(s) 131, 510, 1187
BsmAI GTCTC 1 cut(s) 716
BsmFI GGGAC 1 cut(s) 647
BsnI GGCC 3 cut(s) 56, 503, 885
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 4 cut(s) 121, 235, 900, 1120
BspACI CCGC 2 cut(s) 257, 453
BspANI GGCC 3 cut(s) 56, 503, 885
BspCNI CTCAG 3 cut(s) 360, 1061, 1231
BspLI GGNNCC 1 cut(s) 36
BspMAI CTGCAG 1 cut(s) 805
BspPI GGATC 3 cut(s) 116, 243, 1128
BspTI CTTAAG 1 cut(s) 389
BsrDI GCAATG 1 cut(s) 167
BsrFI RCCGGY 1 cut(s) 398
BsrI ACTGG 4 cut(s) 433, 783, 1163, 1192
BssAI RCCGGY 1 cut(s) 398
BssECI CCNNGG 4 cut(s) 715, 847, 858, 1015
BssMI GATC 4 cut(s) 121, 235, 900, 1120
BssT1I CCWWGG 1 cut(s) 1015
Bst2UI CCWGG 4 cut(s) 511, 717, 849, 859
Bst4CI ACNGT 4 cut(s) 34, 638, 703, 820
Bst6I CTCTTC 3 cut(s) 159, 891, 1130
BstAFI CTTAAG 1 cut(s) 389
BstC8I GCNNGC 2 cut(s) 826, 913
BstDEI CTNAG 4 cut(s) 368, 890, 1048, 1239
BstEII GGTNACC 1 cut(s) 1010
BstF5I GGATG 4 cut(s) 251, 478, 498, 571
BstH2I RGCGCY 1 cut(s) 1215
BstHHI GCGC 1 cut(s) 1214
BstKTI GATC 4 cut(s) 124, 238, 903, 1123
BstMAI GTCTC 1 cut(s) 716
BstMBI GATC 4 cut(s) 121, 235, 900, 1120
BstNI CCWGG 4 cut(s) 511, 717, 849, 859
BstNSI RCATGY 2 cut(s) 828, 915
BstPI GGTNACC 1 cut(s) 1010
BstSCI CCNGG 5 cut(s) 223, 509, 715, 847, 857
BstSFI CTRYAG 1 cut(s) 801
BstV1I GCAGC 4 cut(s) 80, 236, 787, 1201
BstV2I GAAGAC 1 cut(s) 704
BstX2I RGATCY 2 cut(s) 900, 1120
BstYI RGATCY 2 cut(s) 900, 1120
BsuI GTATCC 1 cut(s) 1188
BsuRI GGCC 3 cut(s) 56, 503, 885
BtsCI GGATG 4 cut(s) 251, 478, 498, 571
BtsI GCAGTG 1 cut(s) 1022
BtsIMutI CAGTG 2 cut(s) 708, 1022
Cac8I GCNNGC 2 cut(s) 826, 913
CfoI GCGC 1 cut(s) 1214
Cfr10I RCCGGY 1 cut(s) 398
Cfr13I GGNCC 3 cut(s) 501, 884, 1019
Csp6I GTAC 2 cut(s) 746, 1150
CviAII CATG 8 cut(s) 239, 349, 505, 600, 825, 912, 971, 1172
CviQI GTAC 2 cut(s) 746, 1150
DdeI CTNAG 4 cut(s) 368, 890, 1048, 1239
DpnI GATC 4 cut(s) 123, 237, 902, 1122
DpnII GATC 4 cut(s) 121, 235, 900, 1120
Eam1104I CTCTTC 3 cut(s) 159, 891, 1130
EarI CTCTTC 3 cut(s) 159, 891, 1130
Ecl136II GAGCTC 1 cut(s) 83
Eco130I CCWWGG 1 cut(s) 1015
Eco24I GRGCYC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 1019
Eco53kI GAGCTC 1 cut(s) 83
Eco57I CTGAAG 4 cut(s) 80, 140, 780, 906
Eco91I GGTNACC 1 cut(s) 1010
EcoICRI GAGCTC 1 cut(s) 83
EcoO109I RGGNCCY 1 cut(s) 884
EcoO65I GGTNACC 1 cut(s) 1010
EcoRII CCWGG 4 cut(s) 509, 715, 847, 857
EcoT14I CCWWGG 1 cut(s) 1015
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 1015
FaeI CATG 8 cut(s) 242, 352, 508, 603, 828, 915, 974, 1175
FalI AAGNNNNNCTT 4 cut(s) 325, 357, 648, 680
FaqI GGGAC 1 cut(s) 647
FatI CATG 8 cut(s) 238, 348, 504, 599, 824, 911, 970, 1171
FauI CCCGC 1 cut(s) 446
Fnu4HI GCNGC 4 cut(s) 69, 250, 801, 1215
FokI GGATG 4 cut(s) 258, 485, 505, 578
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 4 cut(s) 69, 250, 801, 1215
FspBI CTAG 5 cut(s) 65, 360, 519, 525, 708
GlaI GCGC 1 cut(s) 1213
GluI GCNGC 4 cut(s) 69, 250, 801, 1215
HaeII RGCGCY 1 cut(s) 1215
HaeIII GGCC 3 cut(s) 56, 503, 885
HapII CCGG 7 cut(s) 78, 132, 188, 212, 224, 399, 563
HhaI GCGC 1 cut(s) 1214
Hin1II CATG 8 cut(s) 242, 352, 508, 603, 828, 915, 974, 1175
Hin6I GCGC 1 cut(s) 1212
HinP1I GCGC 1 cut(s) 1212
HincII GTYRAC 1 cut(s) 816
HindII GTYRAC 1 cut(s) 816
HinfI GANTC 4 cut(s) 149, 184, 596, 990
HpaII CCGG 7 cut(s) 78, 132, 188, 212, 224, 399, 563
HphI GGTGA 1 cut(s) 443
Hpy166II GTNNAC 3 cut(s) 620, 816, 1022
Hpy188I TCNGA 7 cut(s) 22, 39, 99, 537, 925, 1035, 1051
Hpy188III TCNNGA 3 cut(s) 271, 767, 1140
Hpy8I GTNNAC 3 cut(s) 620, 816, 1022
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 2 cut(s) 191, 930
HpyCH4III ACNGT 4 cut(s) 34, 638, 703, 820
HpyCH4V TGCA 9 cut(s) 206, 252, 332, 743, 803, 828, 1043, 1195, 1217
HpyF3I CTNAG 4 cut(s) 368, 890, 1048, 1239
Hsp92II CATG 8 cut(s) 242, 352, 508, 603, 828, 915, 974, 1175
HspAI GCGC 1 cut(s) 1212
Kzo9I GATC 4 cut(s) 121, 235, 900, 1120
LmnI GCTCC 3 cut(s) 5, 80, 259
Lsp1109I GCAGC 4 cut(s) 80, 236, 787, 1201
LweI GCATC 2 cut(s) 236, 916
MaeI CTAG 5 cut(s) 65, 360, 519, 525, 708
MaeIII GTNAC 7 cut(s) 176, 271, 314, 355, 805, 960, 1010
MalI GATC 4 cut(s) 123, 237, 902, 1122
MboI GATC 4 cut(s) 121, 235, 900, 1120
MboII GAAGA 8 cut(s) 6, 146, 709, 786, 908, 959, 1064, 1117
MflI RGATCY 2 cut(s) 900, 1120
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 6 cut(s) 207, 412, 419, 530, 1075, 1233
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 2 cut(s) 223, 275
MroXI GAANNNNTTC 2 cut(s) 104, 989
MseI TTAA 3 cut(s) 173, 390, 570
MslI CAYNNNNRTG 2 cut(s) 132, 969
MspA1I CMGCKG 1 cut(s) 800
MspCI CTTAAG 1 cut(s) 389
MspI CCGG 7 cut(s) 78, 132, 188, 212, 224, 399, 563
MspR9I CCNGG 5 cut(s) 225, 511, 717, 849, 859
MvaI CCWGG 4 cut(s) 511, 717, 849, 859
NciI CCSGG 1 cut(s) 225
NdeII GATC 4 cut(s) 121, 235, 900, 1120
NlaIII CATG 8 cut(s) 242, 352, 508, 603, 828, 915, 974, 1175
NlaIV GGNNCC 1 cut(s) 36
NmuCI GTSAC 3 cut(s) 271, 355, 960
NspI RCATGY 2 cut(s) 828, 915
OliI CACNNNNGTG 1 cut(s) 132
PaeI GCATGC 2 cut(s) 828, 915
PcsI WCGNNNNNNNCGW 1 cut(s) 35
PdmI GAANNNNTTC 2 cut(s) 104, 989
PfeI GAWTC 3 cut(s) 184, 596, 990
PflFI GACNNNGTC 2 cut(s) 343, 703
PflMI CCANNNNNTGG 2 cut(s) 510, 1187
PfoI TCCNGGA 1 cut(s) 223
PkrI GCNGC 4 cut(s) 70, 251, 802, 1216
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
Psp124BI GAGCTC 1 cut(s) 85
Psp6I CCWGG 4 cut(s) 509, 715, 847, 857
PspEI GGTNACC 1 cut(s) 1010
PspGI CCWGG 4 cut(s) 509, 715, 847, 857
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 3 cut(s) 501, 884, 1019
PstI CTGCAG 1 cut(s) 805
PsuI RGATCY 2 cut(s) 900, 1120
PsyI GACNNNGTC 2 cut(s) 343, 703
PvuII CAGCTG 1 cut(s) 800
RsaI GTAC 2 cut(s) 747, 1151
RsaNI GTAC 2 cut(s) 746, 1150
RseI CAYNNNNRTG 2 cut(s) 132, 969
SacI GAGCTC 1 cut(s) 85
SaqAI TTAA 3 cut(s) 173, 390, 570
SatI GCNGC 4 cut(s) 69, 250, 801, 1215
Sau3AI GATC 4 cut(s) 121, 235, 900, 1120
Sau96I GGNCC 3 cut(s) 501, 884, 1019
ScaI AGTACT 1 cut(s) 747
SchI GAGTC 1 cut(s) 143
ScrFI CCNGG 5 cut(s) 225, 511, 717, 849, 859
SduI GDGCHC 1 cut(s) 85
SfaNI GCATC 2 cut(s) 236, 916
SfcI CTRYAG 1 cut(s) 801
SinI GGWCC 1 cut(s) 1019
SmiMI CAYNNNNRTG 2 cut(s) 132, 969
SmlI CTYRAG 3 cut(s) 389, 765, 904
SmoI CTYRAG 3 cut(s) 389, 765, 904
SpeI ACTAGT 1 cut(s) 359
SphI GCATGC 2 cut(s) 828, 915
Sse9I AATT 6 cut(s) 207, 412, 419, 530, 1075, 1233
SsiI CCGC 2 cut(s) 257, 453
SspMI CTAG 5 cut(s) 65, 360, 519, 525, 708
SstI GAGCTC 1 cut(s) 85
StyD4I CCNGG 5 cut(s) 223, 509, 715, 847, 857
StyI CCWWGG 1 cut(s) 1015
TaaI ACNGT 4 cut(s) 34, 638, 703, 820
TaqI TCGA 2 cut(s) 661, 788
TasI AATT 6 cut(s) 207, 412, 419, 530, 1075, 1233
TatI WGTACW 1 cut(s) 745
TfiI GAWTC 3 cut(s) 184, 596, 990
Tru1I TTAA 3 cut(s) 173, 390, 570
Tru9I TTAA 3 cut(s) 173, 390, 570
TscAI CASTG 2 cut(s) 708, 1029
TseFI GTSAC 3 cut(s) 271, 355, 960
TseI GCWGC 4 cut(s) 68, 249, 800, 1214
Tsp45I GTSAC 3 cut(s) 271, 355, 960
TspDTI ATGAA 4 cut(s) 959, 1160, 1211, 1216
TspGWI ACGGA 1 cut(s) 290
TspRI CASTG 2 cut(s) 708, 1029
Tth111I GACNNNGTC 2 cut(s) 343, 703
Van91I CCANNNNNTGG 2 cut(s) 510, 1187
Vha464I CTTAAG 1 cut(s) 389
VpaK11BI GGWCC 1 cut(s) 1019
XapI RAATTY 2 cut(s) 419, 530
XceI RCATGY 2 cut(s) 828, 915
XmnI GAANNNNTTC 2 cut(s) 104, 989
XspI CTAG 5 cut(s) 65, 360, 519, 525, 708
ZrmI AGTACT 1 cut(s) 747
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.