Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014555

Physical Location & Seq

Genomic Coordinates Reverse (-)

15939110 .. 15940590

Gene Structure 1481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G39820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGTTCTAGTTATGGATGATGAAGAGAGTAACAACGTTGAAAGATATGACGACGTCGTATTGCCAGGGTTTAGGTTCCATCCCACTGATGAAGAACTCGTAAGTTTCTACTTGAAACGGAAGGTTTTACACAAATCTCTTCCCTTTGATCTCATCAAGAAAGTCGACATTTACAAATACGATCCATGGGACCTCCCAAAGCTTGCAGCGATGGGGGAAAAAGAGTGGTACTTTTATTGTCCTAGAGACAGGAAATACCGCAACAGCACAAGACCTAACCGAGTAACTGGAGGTGGCTTCTGGAAAGCAACCGGAACAGACCGGCCTATATACTCATTGGACTCCACTCGATGCATCGGTTTGAAGAAATCACTTGTGTTCTACCGTGGTCGAGCTGCTAAAGGAGTCAAAACCGATTGGATGATGCATGAATTTCGTCTCCCTTCTCTCTCTGACTCTCATCACTCATCATATCCCAATTACAATAACAAGAAGCAACACCTTAACAATAACAACAACAGCAAGGAGCTTCCTTCAAACGATGCTTGGGCGATATGTAGAATATTTAAGAAGACAAATGCAGTATCCTCACAAAGATCAATCCCACAATCTTGGGTTTATCCAACGATTCCTGACAACAATCAACAGTCACACAACAACACCGCAACTCTCTTAGCTTCATCAGACGTTCTCAGCCACATATCAACAAGACAAAACTTTATTCCTTCTCCAGTCAACGAACCCGCAAGCTTCACAGAATCAGCTGCTTCTTACTTCGCGTCTCAGATGCTCGGAGTCACGTACAATACAGCCAGAAACAACGGAACAGGGGATGCTCTGTTTCTGAGAAACAATGGAACAGGGGATGCTCTGGTTCTGAGCAACAATGAGAATAACTACTTCAACAACTTGACTGGAGGGTTGACTCATGAGGTTCCGAATGTAAGATCAATGGTGATGGAGGAGACTACGGGGAGTGAGATGTCGGCGACGTCGTATTCCACTAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009786 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0017145 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045770 GO:0048103 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051781 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

337

Amino Acids

38.3

Weight (kDa)

8.56

Isoelectric Point (pI)

40.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	22 - 147	1.2e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39820
fragaria_vesca	FvH4_6g48740
malus_domestica	MD09G1050400.v1.1 MD17G1050600.v1.1
prunus_persica	Prupe.3G268400_v2.0.a1
pyrus_communis	pycom111g04150 pycom17g04550
rosa_chinensis	RchiOBHm_Chr2g0168651
rosa_laevigata	RLG00000021794
rosa_multiflora	Rmu_sc0002416.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082810
rosa_rugosa	Rorug02G0534300
rosa_samantha	Rh2AG605100 Rh2BG618100 Rh2CG586300 Rh2DG628700
rosa_wichuraiana	Rw2G050160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	57, 995
AccI	GTMKAC	1 cut(s)	165
AccII	CGCG	1 cut(s)	779
AciI	CCGC	3 cut(s)	259, 663, 744
AclI	AACGTT	1 cut(s)	36
AclWI	GGATC	1 cut(s)	176
AcsI	RAATTY	1 cut(s)	431
AcyI	GRCGYC	2 cut(s)	54, 992
AfaI	GTAC	2 cut(s)	230, 803
AgsI	TTSAA	5 cut(s)	41, 115, 364, 537, 904
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	6 cut(s)	202, 395, 529, 677, 750, 764
AluI	AGCT	6 cut(s)	202, 395, 529, 677, 750, 764
Alw26I	GTCTC	4 cut(s)	240, 443, 786, 959
AlwI	GGATC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	323
ApeKI	GCWGC	3 cut(s)	206, 395, 764
ApoI	RAATTY	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	190
AsuHPI	GGTGA	1 cut(s)	967
AvaII	GGWCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	578
BbvI	GCAGC	3 cut(s)	218, 382, 751
BccI	CCATC	3 cut(s)	87, 205, 952
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	1 cut(s)	66
BciVI	GTATCC	1 cut(s)	595
BcoDI	GTCTC	4 cut(s)	240, 443, 786, 959
BfaI	CTAG	2 cut(s)	8, 243
BfuI	GTATCC	1 cut(s)	595
BisI	GCNGC	3 cut(s)	207, 396, 765
BlsI	GCNGC	3 cut(s)	208, 397, 766
Bme1390I	CCNGG	1 cut(s)	66
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	190
BmiI	GGNNCC	3 cut(s)	77, 191, 936
BmrFI	CCNGG	1 cut(s)	66
BmsI	GCATC	7 cut(s)	341, 363, 414, 532, 777, 823, 856
BpiI	GAAGAC	1 cut(s)	578
BpmI	CTGGAG	3 cut(s)	309, 714, 936
BsaAI	YACGTR	1 cut(s)	801
BsaHI	GRCGYC	2 cut(s)	54, 992
BsaJI	CCNNGG	3 cut(s)	65, 185, 385
BsaWI	WCCGGW	1 cut(s)	311
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	3 cut(s)	292, 731, 919
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	65, 185, 385
BseGI	GGATG	5 cut(s)	22, 79, 426, 838, 871
BseMII	CTCAG	4 cut(s)	706, 797, 836, 869
BseNI	ACTGG	3 cut(s)	292, 731, 919
BseRI	GAGGAG	1 cut(s)	977
BseXI	GCAGC	3 cut(s)	218, 382, 751
Bsh1236I	CGCG	1 cut(s)	779
BshFI	GGCC	1 cut(s)	325
BsiSI	CCGG	2 cut(s)	312, 322
BslFI	GGGAC	1 cut(s)	203
BsmAI	GTCTC	4 cut(s)	240, 443, 786, 959
BsmBI	CGTCTC	2 cut(s)	443, 786
BsmFI	GGGAC	1 cut(s)	203
BsnI	GGCC	1 cut(s)	325
Bsp143I	GATC	4 cut(s)	148, 181, 596, 947
Bsp19I	CCATGG	1 cut(s)	185
BspACI	CCGC	3 cut(s)	259, 663, 744
BspANI	GGCC	1 cut(s)	325
BspCNI	CTCAG	4 cut(s)	705, 796, 837, 870
BspFNI	CGCG	1 cut(s)	779
BspHI	TCATGA	1 cut(s)	928
BspLI	GGNNCC	3 cut(s)	77, 191, 936
BspPI	GGATC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	321
BsrI	ACTGG	3 cut(s)	292, 731, 919
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	3 cut(s)	65, 185, 385
BssMI	GATC	4 cut(s)	148, 181, 596, 947
BssNI	GRCGYC	2 cut(s)	54, 992
BssT1I	CCWWGG	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	2 cut(s)	386, 648
Bst6I	CTCTTC	2 cut(s)	18, 144
BstACI	GRCGYC	2 cut(s)	54, 992
BstBAI	YACGTR	1 cut(s)	801
BstC8I	GCNNGC	2 cut(s)	204, 748
BstDEI	CTNAG	5 cut(s)	673, 692, 783, 845, 878
BstDSI	CCRYGG	2 cut(s)	185, 385
BstF5I	GGATG	5 cut(s)	22, 79, 426, 838, 871
BstFNI	CGCG	1 cut(s)	779
BstKTI	GATC	4 cut(s)	151, 184, 599, 950
BstMAI	GTCTC	4 cut(s)	240, 443, 786, 959
BstMBI	GATC	4 cut(s)	148, 181, 596, 947
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstUI	CGCG	1 cut(s)	779
BstV1I	GCAGC	3 cut(s)	218, 382, 751
BstV2I	GAAGAC	1 cut(s)	578
BstXI	CCANNNNNNTGG	1 cut(s)	612
BsuI	GTATCC	1 cut(s)	595
BsuRI	GGCC	1 cut(s)	325
BtgI	CCRYGG	2 cut(s)	185, 385
BtgZI	GCGATG	1 cut(s)	224
BtsCI	GGATG	5 cut(s)	22, 79, 426, 838, 871
BtsIMutI	CAGTG	1 cut(s)	84
Cac8I	GCNNGC	2 cut(s)	204, 748
CciI	TCATGA	1 cut(s)	928
Cfr10I	RCCGGY	1 cut(s)	321
Cfr13I	GGNCC	1 cut(s)	190
CseI	GACGC	1 cut(s)	768
Csp6I	GTAC	2 cut(s)	229, 802
CviAII	CATG	3 cut(s)	186, 428, 929
CviQI	GTAC	2 cut(s)	229, 802
DdeI	CTNAG	5 cut(s)	673, 692, 783, 845, 878
DpnI	GATC	4 cut(s)	150, 183, 598, 949
DpnII	GATC	4 cut(s)	148, 181, 596, 947
Eam1104I	CTCTTC	2 cut(s)	18, 144
EarI	CTCTTC	2 cut(s)	18, 144
Eco130I	CCWWGG	1 cut(s)	185
Eco47I	GGWCC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	190
EcoRII	CCWGG	1 cut(s)	64
EcoT14I	CCWWGG	1 cut(s)	185
EcoT22I	ATGCAT	2 cut(s)	356, 429
ErhI	CCWWGG	1 cut(s)	185
Esp3I	CGTCTC	2 cut(s)	443, 786
FaeI	CATG	3 cut(s)	189, 431, 932
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	3 cut(s)	185, 427, 928
FauI	CCCGC	1 cut(s)	751
FblI	GTMKAC	1 cut(s)	165
Fnu4HI	GCNGC	3 cut(s)	207, 396, 765
FokI	GGATG	5 cut(s)	29, 66, 433, 845, 878
Fsp4HI	GCNGC	3 cut(s)	207, 396, 765
FspBI	CTAG	2 cut(s)	8, 243
GluI	GCNGC	3 cut(s)	207, 396, 765
GsuI	CTGGAG	3 cut(s)	309, 714, 936
HaeIII	GGCC	1 cut(s)	325
HapII	CCGG	2 cut(s)	312, 322
HgaI	GACGC	1 cut(s)	768
Hin1I	GRCGYC	2 cut(s)	54, 992
Hin1II	CATG	3 cut(s)	189, 431, 932
HincII	GTYRAC	3 cut(s)	166, 736, 924
HindII	GTYRAC	3 cut(s)	166, 736, 924
HindIII	AAGCTT	2 cut(s)	200, 748
HinfI	GANTC	7 cut(s)	341, 405, 455, 628, 758, 795, 925
HpaII	CCGG	2 cut(s)	312, 322
HphI	GGTGA	1 cut(s)	967
Hpy166II	GTNNAC	3 cut(s)	166, 736, 924
Hpy188I	TCNGA	7 cut(s)	454, 685, 786, 794, 846, 879, 939
Hpy188III	TCNNGA	4 cut(s)	157, 301, 632, 929
Hpy8I	GTNNAC	3 cut(s)	166, 736, 924
Hpy99I	CGWCG	4 cut(s)	56, 59, 994, 997
HpyAV	CCTTC	4 cut(s)	115, 453, 543, 735
HpyCH4III	ACNGT	2 cut(s)	386, 648
HpyCH4IV	ACGT	5 cut(s)	36, 54, 687, 800, 992
HpyCH4V	TGCA	4 cut(s)	206, 354, 427, 581
HpyF3I	CTNAG	5 cut(s)	673, 692, 783, 845, 878
HpySE526I	ACGT	5 cut(s)	36, 54, 687, 800, 992
Hsp92I	GRCGYC	2 cut(s)	54, 992
Hsp92II	CATG	3 cut(s)	189, 431, 932
Kzo9I	GATC	4 cut(s)	148, 181, 596, 947
LmnI	GCTCC	1 cut(s)	526
Lsp1109I	GCAGC	3 cut(s)	218, 382, 751
LweI	GCATC	7 cut(s)	341, 363, 414, 532, 777, 823, 856
MaeI	CTAG	2 cut(s)	8, 243
MaeII	ACGT	5 cut(s)	36, 54, 687, 800, 992
MaeIII	GTNAC	4 cut(s)	29, 283, 648, 796
MalI	GATC	4 cut(s)	150, 183, 598, 949
MboI	GATC	4 cut(s)	148, 181, 596, 947
MboII	GAAGA	5 cut(s)	35, 104, 131, 376, 583
MluCI	AATT	3 cut(s)	431, 478, 1009
MlyI	GAGTC	5 cut(s)	335, 414, 449, 804, 919
MmeI	TCCRAC	1 cut(s)	647
MnlI	CCTC	6 cut(s)	203, 284, 598, 911, 925, 955
Mph1103I	ATGCAT	2 cut(s)	356, 429
MseI	TTAA	3 cut(s)	504, 567, 1012
MspA1I	CMGCKG	1 cut(s)	764
MspI	CCGG	2 cut(s)	312, 322
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	779
NcoI	CCATGG	1 cut(s)	185
NdeII	GATC	4 cut(s)	148, 181, 596, 947
NlaIII	CATG	3 cut(s)	189, 431, 932
NlaIV	GGNNCC	3 cut(s)	77, 191, 936
NmuCI	GTSAC	2 cut(s)	648, 796
NsiI	ATGCAT	2 cut(s)	356, 429
PagI	TCATGA	1 cut(s)	928
PcsI	WCGNNNNNNNCGW	1 cut(s)	992
PfeI	GAWTC	2 cut(s)	628, 758
PflFI	GACNNNGTC	1 cut(s)	53
PkrI	GCNGC	3 cut(s)	208, 397, 766
PleI	GAGTC	5 cut(s)	335, 413, 449, 803, 919
PpsI	GAGTC	5 cut(s)	335, 413, 449, 803, 919
Ppu21I	YACGTR	1 cut(s)	801
PpuMI	RGGWCCY	1 cut(s)	190
Psp1406I	AACGTT	1 cut(s)	36
Psp5II	RGGWCCY	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	3 cut(s)	77, 191, 936
PspPI	GGNCC	1 cut(s)	190
PspPPI	RGGWCCY	1 cut(s)	190
PsyI	GACNNNGTC	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	764
RsaI	GTAC	2 cut(s)	230, 803
RsaNI	GTAC	2 cut(s)	229, 802
SalI	GTCGAC	1 cut(s)	164
SaqAI	TTAA	3 cut(s)	504, 567, 1012
SatI	GCNGC	3 cut(s)	207, 396, 765
Sau3AI	GATC	4 cut(s)	148, 181, 596, 947
Sau96I	GGNCC	1 cut(s)	190
SchI	GAGTC	5 cut(s)	335, 414, 449, 804, 919
ScrFI	CCNGG	1 cut(s)	66
SfaNI	GCATC	7 cut(s)	341, 363, 414, 532, 777, 823, 856
SinI	GGWCC	1 cut(s)	190
Sse9I	AATT	3 cut(s)	431, 478, 1009
SsiI	CCGC	3 cut(s)	259, 663, 744
SspI	AATATT	1 cut(s)	564
SspMI	CTAG	2 cut(s)	8, 243
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	185
TaaI	ACNGT	2 cut(s)	386, 648
TaiI	ACGT	5 cut(s)	39, 57, 690, 803, 995
TaqI	TCGA	3 cut(s)	165, 349, 391
TasI	AATT	3 cut(s)	431, 478, 1009
TfiI	GAWTC	2 cut(s)	628, 758
Tru1I	TTAA	3 cut(s)	504, 567, 1012
Tru9I	TTAA	3 cut(s)	504, 567, 1012
TscAI	CASTG	1 cut(s)	91
TseFI	GTSAC	2 cut(s)	648, 796
TseI	GCWGC	3 cut(s)	206, 395, 764
Tsp45I	GTSAC	2 cut(s)	648, 796
TspDTI	ATGAA	4 cut(s)	36, 105, 444, 669
TspGWI	ACGGA	2 cut(s)	133, 837
TspRI	CASTG	1 cut(s)	91
Tth111I	GACNNNGTC	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	165
XspI	CTAG	2 cut(s)	8, 243
ZraI	GACGTC	2 cut(s)	55, 993
Zsp2I	ATGCAT	2 cut(s)	356, 429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.