Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0014555

Physical Location & Seq

Genomic Coordinates Forward (+)

78374494 .. 78376337

Gene Structure 1844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021794

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAAGAGAAGAATGATCAGATGGATAAGGTTGATGATGTCATGTTGCCAGGTTTTCGCTTCCATCCAACTGATGAGGAACTTGTTGGTTTTTACCTCAAGAGAAAAATTCAGCAAAGGCTTCTCCCCATTGAACTGATTAAGCAAGTGGACATTTATAAATATGATCCCTGGGATCTTCCAAAGCTGGCAAGTACTGGGGAGAAAGAGTGGTACTTCTACTGCCCAAGGGATCGAAAATACCGCAACAGTGCTAGGCCTAACCGAGTCACAGGAGCCGGGTTTTGGAAAGCAACAGGGACAGACAGGCCTATTTATTCATCTGAAGGCTCCAAGTGCATAGGCCTAAAGAAGTCCCTTGTGTTCTACAGAGGCAGAGCTGCTAAAGGAATCAAAACTGATTGGATGATGCACGAGTTTCGCCTCCCTTCTATCCCAGACTCATCACCACCCAAGAAGCTGTTAGATAAAAGCCTTCCTCCAAACGATGCATGGGCCATTTGCAGGATTTTCAAGAAAACAAACTCAATGGCACAGAGGGCTCTTTCTCAATCTTGGCTATCTACACTGCCCGAACCTACAGCATCCGGTTTTCTAACTCAATGCCCTCAGTTCAGTTCCGAAAACAACATATCTTGCACCACTGACTTAGGATCAGCCATCCAGTTTTGGAGCAACAACAATGACTTACAACATCAACAAGTTTCAACTTACTCAGCTTTCGACACTCTCCCTTATAAACCCAACTTCAATCCTGCATTAGTTGGAGAAAACCTTCCCAATGGCATCACGTTCTCTCCAATTGAAATGTCATCACCACCCAATTTCAACCACGCCTTAGTTGGTGACTTGAGTAACAACAACACTACCTCAGGGAGCATAGACTTTGATGGCGCACAACAACAACAGTTTAGTAATGGCTTCCCAATCAGTTTGGCTCAAGATCAGATTCAACAAAATACCAACACAAGCCAGGCTAACAATAACAATAGTCATTGGGGGGCTATCAGATCAATTGGGTTTCCTTTCAGTTTGGGTTCAGATGATCCTAGTGACATGTCTACTAGCTATTCTACAAACAAATGCTATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009786 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0017145 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045770 GO:0048103 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051781 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

365

Amino Acids

41.03

Weight (kDa)

6.95

Isoelectric Point (pI)

40.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	17 - 142	9e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39820
fragaria_vesca	FvH4_6g48740
malus_domestica	MD09G1050400.v1.1 MD17G1050600.v1.1
prunus_persica	Prupe.3G268400_v2.0.a1
pyrus_communis	pycom111g04150 pycom17g04550
rosa_chinensis	RchiOBHm_Chr2g0168651
rosa_laevigata	RLG00000021794
rosa_multiflora	Rmu_sc0002416.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082810
rosa_rugosa	Rorug02G0534300
rosa_samantha	Rh2AG605100 Rh2BG618100 Rh2CG586300 Rh2DG628700
rosa_wichuraiana	Rw2G050160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	159, 738
AccI	GTMKAC	1 cut(s)	1061
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	5 cut(s)	161, 183, 240, 661, 1040
AcsI	RAATTY	1 cut(s)	108
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	196, 215
AfiI	CCNNNNNNNGG	2 cut(s)	285, 504
AflIII	ACRYGT	1 cut(s)	1056
AgsI	TTSAA	7 cut(s)	134, 514, 708, 751, 806, 829, 953
AjnI	CCWGG	3 cut(s)	49, 170, 972
AluBI	AGCT	5 cut(s)	187, 380, 460, 719, 1068
AluI	AGCT	5 cut(s)	187, 380, 460, 719, 1068
AlwI	GGATC	5 cut(s)	161, 183, 240, 661, 1040
AoxI	GGCC	4 cut(s)	257, 308, 343, 495
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	774
AspLEI	GCGC	1 cut(s)	896
AspS9I	GGNCC	1 cut(s)	495
AsuC2I	CCSGG	1 cut(s)	280
AsuHPI	GGTGA	3 cut(s)	438, 807, 857
AxyI	CCTNAGG	1 cut(s)	871
BanII	GRGCYC	1 cut(s)	544
BauI	CACGAG	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	4 cut(s)	16, 72, 668, 884
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	3 cut(s)	51, 172, 974
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	280
BfaI	CTAG	3 cut(s)	255, 1050, 1065
BfmI	CTRYAG	2 cut(s)	367, 579
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	4 cut(s)	51, 172, 280, 974
BmgT120I	GGNCC	1 cut(s)	495
BmiI	GGNNCC	2 cut(s)	277, 331
BmrFI	CCNGG	4 cut(s)	51, 172, 280, 974
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	4 cut(s)	399, 478, 593, 795
BmuI	ACTGGG	1 cut(s)	207
BpuEI	CTTGAG	3 cut(s)	83, 871, 924
BpuMI	CCSGG	1 cut(s)	280
BsaJI	CCNNGG	3 cut(s)	170, 171, 227
BsaWI	WCCGGW	1 cut(s)	587
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 224, 781, 811
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 504
Bse1I	ACTGG	2 cut(s)	202, 664
Bse21I	CCTNAGG	1 cut(s)	871
BseBI	CCWGG	3 cut(s)	51, 172, 974
BseDI	CCNNGG	3 cut(s)	170, 171, 227
BseGI	GGATG	4 cut(s)	64, 411, 584, 660
BseLI	CCNNNNNNNGG	2 cut(s)	285, 504
BseMII	CTCAG	3 cut(s)	623, 729, 885
BseNI	ACTGG	2 cut(s)	202, 664
BseXI	GCAGC	1 cut(s)	367
BshFI	GGCC	4 cut(s)	259, 310, 345, 497
BsiSI	CCGG	2 cut(s)	279, 588
BslFI	GGGAC	2 cut(s)	313, 340
BslI	CCNNNNNNNGG	2 cut(s)	285, 504
BsmFI	GGGAC	2 cut(s)	313, 340
BsnI	GGCC	4 cut(s)	259, 310, 345, 497
Bsp1286I	GDGCHC	1 cut(s)	544
Bsp143I	GATC	8 cut(s)	16, 166, 175, 232, 653, 943, 1010, 1045
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	4 cut(s)	259, 310, 345, 497
BspCNI	CTCAG	3 cut(s)	622, 728, 884
BspLI	GGNNCC	2 cut(s)	277, 331
BspPI	GGATC	5 cut(s)	161, 183, 240, 661, 1040
BsrI	ACTGG	2 cut(s)	202, 664
BssECI	CCNNGG	3 cut(s)	170, 171, 227
BssMI	GATC	8 cut(s)	16, 166, 175, 232, 653, 943, 1010, 1045
BssSI	CACGAG	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	413
Bst2UI	CCWGG	3 cut(s)	51, 172, 974
Bst4CI	ACNGT	2 cut(s)	251, 909
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	5 cut(s)	609, 649, 715, 838, 871
BstF5I	GGATG	4 cut(s)	64, 411, 584, 660
BstHHI	GCGC	1 cut(s)	896
BstKTI	GATC	8 cut(s)	19, 169, 178, 235, 656, 946, 1013, 1048
BstMBI	GATC	8 cut(s)	16, 166, 175, 232, 653, 943, 1010, 1045
BstMWI	GCNNNNNNNGC	2 cut(s)	336, 539
BstNI	CCWGG	3 cut(s)	51, 172, 974
BstNSI	RCATGY	1 cut(s)	1060
BstSCI	CCNGG	4 cut(s)	49, 170, 278, 972
BstSFI	CTRYAG	2 cut(s)	367, 579
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Bsu36I	CCTNAGG	1 cut(s)	871
BsuRI	GGCC	4 cut(s)	259, 310, 345, 497
BtsCI	GGATG	4 cut(s)	64, 411, 584, 660
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	3 cut(s)	256, 566, 642
Cac8I	GCNNGC	1 cut(s)	189
CfoI	GCGC	1 cut(s)	896
Cfr13I	GGNCC	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	195, 214
CviAII	CATG	3 cut(s)	43, 492, 1057
CviQI	GTAC	2 cut(s)	195, 214
DdeI	CTNAG	5 cut(s)	609, 649, 715, 838, 871
DpnI	GATC	8 cut(s)	18, 168, 177, 234, 655, 945, 1012, 1047
DpnII	GATC	8 cut(s)	16, 166, 175, 232, 653, 943, 1010, 1045
Eco130I	CCWWGG	1 cut(s)	227
Eco147I	AGGCCT	3 cut(s)	259, 310, 345
Eco24I	GRGCYC	1 cut(s)	544
Eco57I	CTGAAG	1 cut(s)	345
Eco81I	CCTNAGG	1 cut(s)	871
EcoRII	CCWGG	3 cut(s)	49, 170, 972
EcoT14I	CCWWGG	1 cut(s)	227
EcoT22I	ATGCAT	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	544
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	3 cut(s)	46, 495, 1060
FaqI	GGGAC	2 cut(s)	313, 340
FatI	CATG	3 cut(s)	42, 491, 1056
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	1061
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	4 cut(s)	51, 418, 571, 647
FriOI	GRGCYC	1 cut(s)	544
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	3 cut(s)	255, 1050, 1065
GlaI	GCGC	1 cut(s)	895
GluI	GCNGC	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	259, 310, 345, 497
HapII	CCGG	2 cut(s)	279, 588
HhaI	GCGC	1 cut(s)	896
Hin1II	CATG	3 cut(s)	46, 495, 1060
Hin6I	GCGC	1 cut(s)	894
HinP1I	GCGC	1 cut(s)	894
HinfI	GANTC	4 cut(s)	267, 390, 440, 949
HpaII	CCGG	2 cut(s)	279, 588
HphI	GGTGA	3 cut(s)	438, 807, 857
Hpy166II	GTNNAC	2 cut(s)	151, 1062
Hpy188I	TCNGA	6 cut(s)	21, 325, 622, 948, 1010, 1042
Hpy188III	TCNNGA	3 cut(s)	100, 514, 941
Hpy8I	GTNNAC	2 cut(s)	151, 1062
HpyAV	CCTTC	4 cut(s)	320, 438, 485, 785
HpyCH4III	ACNGT	2 cut(s)	251, 909
HpyCH4IV	ACGT	1 cut(s)	791
HpyCH4V	TGCA	6 cut(s)	339, 412, 491, 504, 639, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	336, 539
HpyF3I	CTNAG	5 cut(s)	609, 649, 715, 838, 871
HpySE526I	ACGT	1 cut(s)	791
Hsp92II	CATG	3 cut(s)	46, 495, 1060
HspAI	GCGC	1 cut(s)	894
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	8 cut(s)	16, 166, 175, 232, 653, 943, 1010, 1045
LmnI	GCTCC	4 cut(s)	275, 335, 672, 876
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	4 cut(s)	399, 478, 593, 795
MaeI	CTAG	3 cut(s)	255, 1050, 1065
MaeII	ACGT	1 cut(s)	791
MaeIII	GTNAC	4 cut(s)	268, 845, 854, 1052
MalI	GATC	8 cut(s)	18, 168, 177, 234, 655, 945, 1012, 1047
MboI	GATC	8 cut(s)	16, 166, 175, 232, 653, 943, 1010, 1045
MboII	GAAGA	3 cut(s)	17, 22, 170
MfeI	CAATTG	2 cut(s)	801, 1014
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	544
MluCI	AATT	4 cut(s)	108, 801, 823, 1014
MlyI	GAGTC	2 cut(s)	276, 434
MmeI	TCCRAC	2 cut(s)	92, 745
MnlI	CCTC	8 cut(s)	70, 107, 365, 434, 489, 531, 618, 880
Mph1103I	ATGCAT	1 cut(s)	493
MroXI	GAANNNNTTC	1 cut(s)	774
MseI	TTAA	1 cut(s)	141
MspI	CCGG	2 cut(s)	279, 588
MspR9I	CCNGG	4 cut(s)	51, 172, 280, 974
MunI	CAATTG	2 cut(s)	801, 1014
MvaI	CCWGG	3 cut(s)	51, 172, 974
MwoI	GCNNNNNNNGC	2 cut(s)	336, 539
NciI	CCSGG	1 cut(s)	280
NdeII	GATC	8 cut(s)	16, 166, 175, 232, 653, 943, 1010, 1045
NlaIII	CATG	3 cut(s)	46, 495, 1060
NlaIV	GGNNCC	2 cut(s)	277, 331
NmuCI	GTSAC	3 cut(s)	268, 845, 1052
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	1 cut(s)	1060
PasI	CCCWGGG	1 cut(s)	171
PceI	AGGCCT	3 cut(s)	259, 310, 345
PciI	ACATGT	1 cut(s)	1056
PdmI	GAANNNNTTC	1 cut(s)	774
PfeI	GAWTC	2 cut(s)	390, 949
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	2 cut(s)	275, 434
PpsI	GAGTC	2 cut(s)	275, 434
PscI	ACATGT	1 cut(s)	1056
PsiI	TTATAA	2 cut(s)	159, 738
Psp6I	CCWGG	3 cut(s)	49, 170, 972
PspGI	CCWGG	3 cut(s)	49, 170, 972
PspN4I	GGNNCC	2 cut(s)	277, 331
PspPI	GGNCC	1 cut(s)	495
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	2 cut(s)	196, 215
RsaNI	GTAC	2 cut(s)	195, 214
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	8 cut(s)	16, 166, 175, 232, 653, 943, 1010, 1045
Sau96I	GGNCC	1 cut(s)	495
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	2 cut(s)	276, 434
ScrFI	CCNGG	4 cut(s)	51, 172, 280, 974
SduI	GDGCHC	1 cut(s)	544
SfaNI	GCATC	4 cut(s)	399, 478, 593, 795
SfcI	CTRYAG	2 cut(s)	367, 579
SmlI	CTYRAG	3 cut(s)	98, 850, 939
SmoI	CTYRAG	3 cut(s)	98, 850, 939
Sse9I	AATT	4 cut(s)	108, 801, 823, 1014
SseBI	AGGCCT	3 cut(s)	259, 310, 345
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	3 cut(s)	255, 1050, 1065
StuI	AGGCCT	3 cut(s)	259, 310, 345
StyD4I	CCNGG	4 cut(s)	49, 170, 278, 972
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	251, 909
TaiI	ACGT	1 cut(s)	794
TaqI	TCGA	2 cut(s)	235, 723
TasI	AATT	4 cut(s)	108, 801, 823, 1014
TatI	WGTACW	1 cut(s)	194
TfiI	GAWTC	2 cut(s)	390, 949
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	3 cut(s)	256, 573, 649
TseFI	GTSAC	3 cut(s)	268, 845, 1052
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	3 cut(s)	268, 845, 1052
TspDTI	ATGAA	1 cut(s)	309
TspRI	CASTG	3 cut(s)	256, 573, 649
XapI	RAATTY	1 cut(s)	108
XceI	RCATGY	1 cut(s)	1060
XcmI	CCANNNNNNNNNTGG	2 cut(s)	489, 839
XmiI	GTMKAC	1 cut(s)	1061
XmnI	GAANNNNTTC	1 cut(s)	774
XspI	CTAG	3 cut(s)	255, 1050, 1065
ZrmI	AGTACT	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.