Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0014555

Physical Location & Seq

Genomic Coordinates Forward (+)

77806776 .. 77807507

Gene Structure 732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G050160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGAAGAGAAGAATGATCAGATGGATAAGGCTGATGACGTCATGTTGCCGGGTTTTCGCTTTCATCCAACTGATGAGGAACTTGTTGGTTTTTACCTCAAGAGGAAAATTCAGCAAAGGCTTCTCCCCATTGAACTGATTAAGCAAGTGGACATTTATAAATATGATCCCTGGGATCTTCCAAAGCTGGCAAGTACTGGGGAGAAAGAGTGGTACTTCTACTGCCCAAGGGATCGAAAATACCGCAACAGTGCTAGGCCTAACAGAGTCACAGGAGCCGGGTTTTGGAAAGCAACAGGAACAGACAGGCCTATTTATTCATCTGAAGGCTCCAAGTGCATAGGCCTAAAGAAGTCCCTTGTGTTCTACAGAGGCAGAGCTGCTAAAGGAATCAAAACTGATTGGATGATGCACGAGTTTCGCCTCCCTTCTATCCCAGACTCATCACCACCCAAGAAGCTGTTAGATAAAAGCCTGCCTCCAAACTTGAATTTTCGGTCTCTAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009786 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0017145 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045770 GO:0048103 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051781 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

169

Amino Acids

19.78

Weight (kDa)

9.52

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	17 - 142	1.2e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

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Orthologous Genes (Group: OG0014555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39820
fragaria_vesca	FvH4_6g48740
malus_domestica	MD09G1050400.v1.1 MD17G1050600.v1.1
prunus_persica	Prupe.3G268400_v2.0.a1
pyrus_communis	pycom111g04150 pycom17g04550
rosa_chinensis	RchiOBHm_Chr2g0168651
rosa_laevigata	RLG00000021794
rosa_multiflora	Rmu_sc0002416.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082810
rosa_rugosa	Rorug02G0534300
rosa_samantha	Rh2AG605100 Rh2BG618100 Rh2CG586300 Rh2DG628700
rosa_wichuraiana	Rw2G050160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
AatII	GACGTC	1 cut(s)	42
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	3 cut(s)	161, 183, 240
AcsI	RAATTY	2 cut(s)	108, 490
AcuI	CTGAAG	1 cut(s)	345
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	196, 215
AfiI	CCNNNNNNNGG	1 cut(s)	285
AgsI	TTSAA	2 cut(s)	134, 490
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	3 cut(s)	187, 380, 460
AluI	AGCT	3 cut(s)	187, 380, 460
Alw26I	GTCTC	1 cut(s)	504
AlwI	GGATC	3 cut(s)	161, 183, 240
AoxI	GGCC	3 cut(s)	257, 308, 343
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	2 cut(s)	108, 490
AsuC2I	CCSGG	2 cut(s)	51, 280
AsuHPI	GGTGA	1 cut(s)	438
BauI	CACGAG	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	1 cut(s)	16
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	1 cut(s)	172
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	2 cut(s)	51, 280
BcoDI	GTCTC	1 cut(s)	504
BfaI	CTAG	1 cut(s)	255
BfmI	CTRYAG	1 cut(s)	367
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	3 cut(s)	51, 172, 280
BmiI	GGNNCC	2 cut(s)	277, 331
BmrFI	CCNGG	3 cut(s)	51, 172, 280
BmrI	ACTGGG	1 cut(s)	207
BmsI	GCATC	1 cut(s)	399
BmuI	ACTGGG	1 cut(s)	207
BpuEI	CTTGAG	1 cut(s)	83
BpuMI	CCSGG	2 cut(s)	51, 280
BsaHI	GRCGYC	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	504
BsaJI	CCNNGG	3 cut(s)	170, 171, 227
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	1 cut(s)	285
Bse1I	ACTGG	1 cut(s)	202
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	3 cut(s)	170, 171, 227
BseGI	GGATG	2 cut(s)	64, 411
BseLI	CCNNNNNNNGG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	202
BseXI	GCAGC	1 cut(s)	367
BshFI	GGCC	3 cut(s)	259, 310, 345
BsiSI	CCGG	2 cut(s)	50, 279
BslFI	GGGAC	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	285
BsmAI	GTCTC	1 cut(s)	504
BsmFI	GGGAC	1 cut(s)	340
BsnI	GGCC	3 cut(s)	259, 310, 345
Bso31I	GGTCTC	1 cut(s)	504
Bsp143I	GATC	4 cut(s)	16, 166, 175, 232
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	3 cut(s)	259, 310, 345
BspLI	GGNNCC	2 cut(s)	277, 331
BspPI	GGATC	3 cut(s)	161, 183, 240
BspTNI	GGTCTC	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	202
BssECI	CCNNGG	3 cut(s)	170, 171, 227
BssMI	GATC	4 cut(s)	16, 166, 175, 232
BssNI	GRCGYC	1 cut(s)	39
BssSI	CACGAG	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	413
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	189, 476
BstF5I	GGATG	2 cut(s)	64, 411
BstKTI	GATC	4 cut(s)	19, 169, 178, 235
BstMAI	GTCTC	1 cut(s)	504
BstMBI	GATC	4 cut(s)	16, 166, 175, 232
BstMWI	GCNNNNNNNGC	1 cut(s)	336
BstNI	CCWGG	1 cut(s)	172
BstSCI	CCNGG	3 cut(s)	49, 170, 278
BstSFI	CTRYAG	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
BsuRI	GGCC	3 cut(s)	259, 310, 345
BtsCI	GGATG	2 cut(s)	64, 411
BtsIMutI	CAGTG	1 cut(s)	256
Cac8I	GCNNGC	2 cut(s)	189, 476
Csp6I	GTAC	2 cut(s)	195, 214
CviAII	CATG	1 cut(s)	43
CviQI	GTAC	2 cut(s)	195, 214
DpnI	GATC	4 cut(s)	18, 168, 177, 234
DpnII	GATC	4 cut(s)	16, 166, 175, 232
Eco130I	CCWWGG	1 cut(s)	227
Eco147I	AGGCCT	3 cut(s)	259, 310, 345
Eco31I	GGTCTC	1 cut(s)	504
Eco57I	CTGAAG	1 cut(s)	345
EcoRII	CCWGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	1 cut(s)	46
FaiI	YATR	4 cut(s)	44, 159, 165, 341
FaqI	GGGAC	1 cut(s)	340
FatI	CATG	1 cut(s)	42
FbaI	TGATCA	1 cut(s)	16
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	2 cut(s)	51, 418
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	1 cut(s)	381
HaeIII	GGCC	3 cut(s)	259, 310, 345
HapII	CCGG	2 cut(s)	50, 279
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	46
HinfI	GANTC	3 cut(s)	267, 390, 440
HpaII	CCGG	2 cut(s)	50, 279
HphI	GGTGA	1 cut(s)	438
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	21, 325
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	320, 438
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	339, 412
HpyF10VI	GCNNNNNNNGC	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	46
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	4 cut(s)	16, 166, 175, 232
LmnI	GCTCC	2 cut(s)	275, 335
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	4 cut(s)	18, 168, 177, 234
MboI	GATC	4 cut(s)	16, 166, 175, 232
MboII	GAAGA	3 cut(s)	17, 22, 170
MflI	RGATCY	1 cut(s)	175
MluCI	AATT	3 cut(s)	108, 490, 504
MlyI	GAGTC	2 cut(s)	276, 434
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	6 cut(s)	70, 96, 107, 365, 434, 489
MseI	TTAA	1 cut(s)	141
MspI	CCGG	2 cut(s)	50, 279
MspR9I	CCNGG	3 cut(s)	51, 172, 280
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	1 cut(s)	336
NciI	CCSGG	2 cut(s)	51, 280
NdeII	GATC	4 cut(s)	16, 166, 175, 232
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	277, 331
NmuCI	GTSAC	1 cut(s)	268
PasI	CCCWGGG	1 cut(s)	171
PceI	AGGCCT	3 cut(s)	259, 310, 345
PfeI	GAWTC	1 cut(s)	390
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	2 cut(s)	275, 434
PpsI	GAGTC	2 cut(s)	275, 434
PsiI	TTATAA	1 cut(s)	159
Psp6I	CCWGG	1 cut(s)	170
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	2 cut(s)	277, 331
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	2 cut(s)	196, 215
RsaNI	GTAC	2 cut(s)	195, 214
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	4 cut(s)	16, 166, 175, 232
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	2 cut(s)	276, 434
ScrFI	CCNGG	3 cut(s)	51, 172, 280
SetI	ASST	5 cut(s)	42, 99, 189, 382, 462
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	108, 490, 504
SseBI	AGGCCT	3 cut(s)	259, 310, 345
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	1 cut(s)	255
StuI	AGGCCT	3 cut(s)	259, 310, 345
StyD4I	CCNGG	3 cut(s)	49, 170, 278
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	1 cut(s)	235
TaqII	GACCGA	1 cut(s)	486
TasI	AATT	3 cut(s)	108, 490, 504
TatI	WGTACW	1 cut(s)	194
TfiI	GAWTC	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TscAI	CASTG	1 cut(s)	256
TseFI	GTSAC	1 cut(s)	268
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	268
TspDTI	ATGAA	2 cut(s)	53, 309
TspRI	CASTG	1 cut(s)	256
XapI	RAATTY	2 cut(s)	108, 490
XspI	CTAG	1 cut(s)	255
ZraI	GACGTC	1 cut(s)	40
ZrmI	AGTACT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.