Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0014555

Physical Location & Seq

Genomic Coordinates Forward (+)

36654905 .. 36656716

Gene Structure 1812 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGGAGAGAAGAATGATCAGATGGATAAAGTTGATGATGTGATGTTGCCGGGTTTTCGCTTCCATCCAACTGATGAGGAGCTTGTTGGGTTTTACCTCAAGAGAAAGATTCAGCAAAGGCTTCTCCCCATTGAACTGATTAAGCAAGTCGACATTTATAAATATGATCCCTGGGATCTTCCAAAACTGGCTAGTACTGGGGAGAAAGAGTGGTACTTTTACTGCCCAAGGGATCGAAAATACCGCAACAGTGCTAGGCCTAACCGAGTCACAGGAGCCGGGTTTTGGAAAGCAACAGGAACAGACAGGCCTATTTATTCATCTGAAGGGTCCAAGTGCATAGGCCTTAAGAAGTCCCTTGTGTTCTACAGAGGCAGAGCTGCTAAAGGAATCAAAACTGATTGGATGATGCACGAGTTTCGCCTCCCTTCTATCGCAGACTCATCACCACCCAAGAAGCTGTTAGATAAAAGCCTCCCTCCAAATGATGCATGGGCCATTTGCAGGATTTTCAAGAAAACAAACTCAATGGCACAGAGGGCTCTTTCTCAATCTTGGCTGTCTCCCTTGCCTGAACCTACATCATCCGGTTTTCTAACTCAATGCCCTCAGTTCAGTTCCGAAAACAACATATCTTGCACCACTGACTTAGGATCAGCCATACAATTTTGGAGCAACAACAATGACTTACAACATCAACAAGCTTCAACTTACTCAGCTTTCGCTCTCTCTAATAAACCCAACTTCAATCCTGCATTAGTTGGAGAAAACATTCCCAATGGCTTCATGTTCACTCCGATTGATATGTCATCACCACCCAATTTCAACCATGCCTTTGTTGGTGACTTGAGTAACAACAACACCTCAGGGAGCATAGACTTTGATGGCTCACAACAACAACAGTTTAGTGGCTTCTCAACCAGTTTGGCTCAAGATCAGAATCAAGAAAACACCATCACAAGCCTGGCTAACAATACTAATAGTCACTGGGGGACTATCAGATCAATCGGGTTTCCTTTTAGTTTGGGCTCAGATGATCCTAGTGACATGTCTACTAGCTATTCTACAAACAAATGCTATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009786 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0017145 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045770 GO:0048103 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051781 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

362

Amino Acids

40.59

Weight (kDa)

7.58

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	17 - 142	8.9e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0014555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39820
fragaria_vesca	FvH4_6g48740
malus_domestica	MD09G1050400.v1.1 MD17G1050600.v1.1
prunus_persica	Prupe.3G268400_v2.0.a1
pyrus_communis	pycom111g04150 pycom17g04550
rosa_chinensis	RchiOBHm_Chr2g0168651
rosa_laevigata	RLG00000021794
rosa_multiflora	Rmu_sc0002416.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082810
rosa_rugosa	Rorug02G0534300
rosa_samantha	Rh2AG605100 Rh2BG618100 Rh2CG586300 Rh2DG628700
rosa_wichuraiana	Rw2G050160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	159
AccI	GTMKAC	2 cut(s)	150, 1052
AciI	CCGC	1 cut(s)	244
AclWI	GGATC	5 cut(s)	161, 183, 240, 661, 1031
AcuI	CTGAAG	1 cut(s)	345
AfaI	GTAC	2 cut(s)	196, 215
AfiI	CCNNNNNNNGG	2 cut(s)	285, 504
AflII	CTTAAG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	1047
AgsI	TTSAA	5 cut(s)	134, 514, 708, 748, 826
AjnI	CCWGG	2 cut(s)	170, 963
AluBI	AGCT	6 cut(s)	82, 380, 460, 704, 719, 1059
AluI	AGCT	6 cut(s)	82, 380, 460, 704, 719, 1059
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	5 cut(s)	161, 183, 240, 661, 1031
AoxI	GGCC	4 cut(s)	257, 308, 343, 495
ApeKI	GCWGC	1 cut(s)	380
Asp700I	GAANNNNTTC	1 cut(s)	771
AspS9I	GGNCC	2 cut(s)	330, 495
AsuC2I	CCSGG	2 cut(s)	51, 280
AsuHPI	GGTGA	3 cut(s)	438, 804, 854
AvaII	GGWCC	1 cut(s)	330
AxyI	CCTNAGG	1 cut(s)	865
BanII	GRGCYC	2 cut(s)	544, 1031
BauI	CACGAG	1 cut(s)	413
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	4 cut(s)	16, 72, 878, 962
BcgI	CGANNNNNNTGC	2 cut(s)	401, 435
BciT130I	CCWGG	2 cut(s)	172, 965
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	2 cut(s)	51, 280
BcoDI	GTCTC	1 cut(s)	567
BfaI	CTAG	4 cut(s)	192, 255, 1041, 1056
BfmI	CTRYAG	1 cut(s)	367
BfrI	CTTAAG	1 cut(s)	347
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	4 cut(s)	51, 172, 280, 965
Bme18I	GGWCC	1 cut(s)	330
BmgT120I	GGNCC	2 cut(s)	330, 495
BmiI	GGNNCC	2 cut(s)	277, 331
BmrFI	CCNGG	4 cut(s)	51, 172, 280, 965
BmrI	ACTGGG	2 cut(s)	207, 997
BmsI	GCATC	2 cut(s)	399, 478
BmuI	ACTGGG	2 cut(s)	207, 997
BpuEI	CTTGAG	3 cut(s)	83, 868, 915
BpuMI	CCSGG	2 cut(s)	51, 280
BsaBI	GATNNNNATC	1 cut(s)	939
BsaJI	CCNNGG	3 cut(s)	170, 171, 227
BsaWI	WCCGGW	1 cut(s)	587
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
Bsc4I	CCNNNNNNNGG	2 cut(s)	285, 504
Bse1I	ACTGG	4 cut(s)	192, 202, 921, 992
Bse21I	CCTNAGG	1 cut(s)	865
Bse8I	GATNNNNATC	1 cut(s)	939
BseBI	CCWGG	2 cut(s)	172, 965
BseDI	CCNNGG	3 cut(s)	170, 171, 227
BseGI	GGATG	3 cut(s)	64, 411, 584
BseJI	GATNNNNATC	1 cut(s)	939
BseLI	CCNNNNNNNGG	2 cut(s)	285, 504
BseMII	CTCAG	4 cut(s)	623, 729, 879, 1044
BseNI	ACTGG	4 cut(s)	192, 202, 921, 992
BseRI	GAGGAG	1 cut(s)	92
BseXI	GCAGC	1 cut(s)	367
BshFI	GGCC	4 cut(s)	259, 310, 345, 497
BsiSI	CCGG	3 cut(s)	50, 279, 588
BslFI	GGGAC	2 cut(s)	340, 1006
BslI	CCNNNNNNNGG	2 cut(s)	285, 504
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	2 cut(s)	340, 1006
BsnI	GGCC	4 cut(s)	259, 310, 345, 497
Bsp1286I	GDGCHC	2 cut(s)	544, 1031
Bsp143I	GATC	8 cut(s)	16, 166, 175, 232, 653, 934, 1001, 1036
BspACI	CCGC	1 cut(s)	244
BspANI	GGCC	4 cut(s)	259, 310, 345, 497
BspCNI	CTCAG	4 cut(s)	622, 728, 878, 1043
BspLI	GGNNCC	2 cut(s)	277, 331
BspPI	GGATC	5 cut(s)	161, 183, 240, 661, 1031
BspTI	CTTAAG	1 cut(s)	347
BsrI	ACTGG	4 cut(s)	192, 202, 921, 992
BssECI	CCNNGG	3 cut(s)	170, 171, 227
BssMI	GATC	8 cut(s)	16, 166, 175, 232, 653, 934, 1001, 1036
BssSI	CACGAG	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	227
Bst2BI	CACGAG	1 cut(s)	413
Bst2UI	CCWGG	2 cut(s)	172, 965
Bst4CI	ACNGT	2 cut(s)	251, 903
BstAFI	CTTAAG	1 cut(s)	347
BstDEI	CTNAG	5 cut(s)	609, 649, 715, 865, 1030
BstF5I	GGATG	3 cut(s)	64, 411, 584
BstKTI	GATC	8 cut(s)	19, 169, 178, 235, 656, 937, 1004, 1039
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	8 cut(s)	16, 166, 175, 232, 653, 934, 1001, 1036
BstMWI	GCNNNNNNNGC	1 cut(s)	539
BstNI	CCWGG	2 cut(s)	172, 965
BstNSI	RCATGY	1 cut(s)	1051
BstSCI	CCNGG	4 cut(s)	49, 170, 278, 963
BstSFI	CTRYAG	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	367
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Bsu36I	CCTNAGG	1 cut(s)	865
BsuRI	GGCC	4 cut(s)	259, 310, 345, 497
BtsCI	GGATG	3 cut(s)	64, 411, 584
BtsIMutI	CAGTG	3 cut(s)	256, 642, 985
Cfr13I	GGNCC	2 cut(s)	330, 495
Csp6I	GTAC	2 cut(s)	195, 214
CviAII	CATG	4 cut(s)	492, 787, 830, 1048
CviQI	GTAC	2 cut(s)	195, 214
DdeI	CTNAG	5 cut(s)	609, 649, 715, 865, 1030
DpnI	GATC	8 cut(s)	18, 168, 177, 234, 655, 936, 1003, 1038
DpnII	GATC	8 cut(s)	16, 166, 175, 232, 653, 934, 1001, 1036
Eco130I	CCWWGG	1 cut(s)	227
Eco147I	AGGCCT	3 cut(s)	259, 310, 345
Eco24I	GRGCYC	2 cut(s)	544, 1031
Eco47I	GGWCC	1 cut(s)	330
Eco57I	CTGAAG	1 cut(s)	345
Eco81I	CCTNAGG	1 cut(s)	865
EcoRII	CCWGG	2 cut(s)	170, 963
EcoT14I	CCWWGG	1 cut(s)	227
EcoT22I	ATGCAT	1 cut(s)	493
EcoT38I	GRGCYC	2 cut(s)	544, 1031
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	4 cut(s)	495, 790, 833, 1051
FaqI	GGGAC	2 cut(s)	340, 1006
FatI	CATG	4 cut(s)	491, 786, 829, 1047
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	2 cut(s)	150, 1052
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	3 cut(s)	51, 418, 571
FriOI	GRGCYC	2 cut(s)	544, 1031
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	4 cut(s)	192, 255, 1041, 1056
GluI	GCNGC	1 cut(s)	381
HaeIII	GGCC	4 cut(s)	259, 310, 345, 497
HapII	CCGG	3 cut(s)	50, 279, 588
Hin1II	CATG	4 cut(s)	495, 790, 833, 1051
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	5 cut(s)	109, 267, 390, 440, 940
HpaII	CCGG	3 cut(s)	50, 279, 588
HphI	GGTGA	3 cut(s)	438, 804, 854
Hpy166II	GTNNAC	3 cut(s)	151, 792, 1053
Hpy188I	TCNGA	7 cut(s)	21, 325, 622, 798, 939, 1001, 1033
Hpy188III	TCNNGA	4 cut(s)	100, 514, 932, 944
Hpy8I	GTNNAC	3 cut(s)	151, 792, 1053
HpyAV	CCTTC	2 cut(s)	320, 438
HpyCH4III	ACNGT	2 cut(s)	251, 903
HpyCH4V	TGCA	6 cut(s)	339, 412, 491, 504, 639, 755
HpyF10VI	GCNNNNNNNGC	1 cut(s)	539
HpyF3I	CTNAG	5 cut(s)	609, 649, 715, 865, 1030
Hsp92II	CATG	4 cut(s)	495, 790, 833, 1051
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	8 cut(s)	16, 166, 175, 232, 653, 934, 1001, 1036
LmnI	GCTCC	4 cut(s)	79, 275, 672, 870
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	2 cut(s)	399, 478
MaeI	CTAG	4 cut(s)	192, 255, 1041, 1056
MaeIII	GTNAC	5 cut(s)	268, 842, 851, 983, 1043
MalI	GATC	8 cut(s)	18, 168, 177, 234, 655, 936, 1003, 1038
MboI	GATC	8 cut(s)	16, 166, 175, 232, 653, 934, 1001, 1036
MboII	GAAGA	2 cut(s)	22, 170
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	2 cut(s)	544, 1031
MluCI	AATT	2 cut(s)	665, 820
MlyI	GAGTC	2 cut(s)	276, 434
MmeI	TCCRAC	2 cut(s)	92, 742
MnlI	CCTC	9 cut(s)	70, 107, 365, 434, 485, 489, 531, 618, 874
Mph1103I	ATGCAT	1 cut(s)	493
MroXI	GAANNNNTTC	1 cut(s)	771
MseI	TTAA	2 cut(s)	141, 348
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	3 cut(s)	50, 279, 588
MspR9I	CCNGG	4 cut(s)	51, 172, 280, 965
MvaI	CCWGG	2 cut(s)	172, 965
MwoI	GCNNNNNNNGC	1 cut(s)	539
NciI	CCSGG	2 cut(s)	51, 280
NdeII	GATC	8 cut(s)	16, 166, 175, 232, 653, 934, 1001, 1036
NlaIII	CATG	4 cut(s)	495, 790, 833, 1051
NlaIV	GGNNCC	2 cut(s)	277, 331
NmuCI	GTSAC	4 cut(s)	268, 842, 983, 1043
NsiI	ATGCAT	1 cut(s)	493
NspI	RCATGY	1 cut(s)	1051
PasI	CCCWGGG	1 cut(s)	171
PceI	AGGCCT	3 cut(s)	259, 310, 345
PciI	ACATGT	1 cut(s)	1047
PdmI	GAANNNNTTC	1 cut(s)	771
PfeI	GAWTC	3 cut(s)	109, 390, 940
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	2 cut(s)	275, 434
PpsI	GAGTC	2 cut(s)	275, 434
PscI	ACATGT	1 cut(s)	1047
PsiI	TTATAA	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	170, 963
PspGI	CCWGG	2 cut(s)	170, 963
PspN4I	GGNNCC	2 cut(s)	277, 331
PspPI	GGNCC	2 cut(s)	330, 495
PsuI	RGATCY	1 cut(s)	175
RsaI	GTAC	2 cut(s)	196, 215
RsaNI	GTAC	2 cut(s)	195, 214
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	141, 348
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	8 cut(s)	16, 166, 175, 232, 653, 934, 1001, 1036
Sau96I	GGNCC	2 cut(s)	330, 495
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	2 cut(s)	276, 434
ScrFI	CCNGG	4 cut(s)	51, 172, 280, 965
SduI	GDGCHC	2 cut(s)	544, 1031
SetI	ASST	9 cut(s)	84, 99, 382, 462, 580, 706, 721, 866, 1061
SfaNI	GCATC	2 cut(s)	399, 478
SfcI	CTRYAG	1 cut(s)	367
SinI	GGWCC	1 cut(s)	330
SmlI	CTYRAG	4 cut(s)	98, 347, 847, 930
SmoI	CTYRAG	4 cut(s)	98, 347, 847, 930
Sse9I	AATT	2 cut(s)	665, 820
SseBI	AGGCCT	3 cut(s)	259, 310, 345
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	4 cut(s)	192, 255, 1041, 1056
StuI	AGGCCT	3 cut(s)	259, 310, 345
StyD4I	CCNGG	4 cut(s)	49, 170, 278, 963
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	251, 903
TaqI	TCGA	2 cut(s)	150, 235
TasI	AATT	2 cut(s)	665, 820
TatI	WGTACW	1 cut(s)	194
TfiI	GAWTC	3 cut(s)	109, 390, 940
Tru1I	TTAA	2 cut(s)	141, 348
Tru9I	TTAA	2 cut(s)	141, 348
TscAI	CASTG	3 cut(s)	256, 649, 992
TseFI	GTSAC	4 cut(s)	268, 842, 983, 1043
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	4 cut(s)	268, 842, 983, 1043
TspDTI	ATGAA	2 cut(s)	309, 775
TspRI	CASTG	3 cut(s)	256, 649, 992
Vha464I	CTTAAG	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	330
XceI	RCATGY	1 cut(s)	1051
XcmI	CCANNNNNNNNNTGG	3 cut(s)	489, 836, 961
XmiI	GTMKAC	2 cut(s)	150, 1052
XmnI	GAANNNNTTC	1 cut(s)	771
XspI	CTAG	4 cut(s)	192, 255, 1041, 1056
ZrmI	AGTACT	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.