Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0014555

Physical Location & Seq

Genomic Coordinates Reverse (-)

3348228 .. 3349899

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1050400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGAGGAGAAGAACGAGATGGAAAGGGTTGATGATGTGATATTACCTGGTTTTCGGTTTCATCCGACAGATGAGGAGCTTGTAGGGTTTTACCTTAAGAGAAAAATCCAACAGAGGCTTCTTCCTATTGAGCTGATTAAGCAAGTTGACATTTATAAATATGATCCGTGGGATCTTCCGAAGCTGGCAAGTACCGGGGAGAAAGAGTGGTACTTCTACTGCCCGAGGGACCGAAAATACCGGAACAGCGCTAGACCTAATCGAGTCACAGGAGCCGGGTTTTGGAAGGCTACCGGAACAGACCGGCCTATCTATTCTTCCGAAGGCACCAAGTGCATAGGGTTAAAGAAGTCCCTTGTGTTCTACAGAGGCAGAGCTGCTAAAGGGATCAAAACTGACTGGATGATGCACGAATTTCGGTTACCTTCTCTCTCAGATTCAGCTCCACCAAAAAAGCTCTTAGATAAAAGCCTCCCTCCAAATGATTCATGGGCAATTTGCAGGATTTTCAAGAAAACAAACTCCATGGCACAGAGAGCACTTTCTCACTCTTGGGCCTCTCAGTTTCCAGAGCCTACAGCGTCTAATTTATTCACTCAGCAGTTCAGCTCGGAGAACATGTCCTGCACAACTGACATGGGATCAACCATGCAGTTTTGGAACAACAATGACTTGCAACAACCATCTAACACAAGCTTCTCTGCCTTTGATACTCTTCCTTACAAACCAATCAACCCTACCGAGTCGAAACCCTCCATGTTTGATGGAGAGTTTCCCAATGGCTTCATGTTCTCACCGGTCGAAATGTCAGGACCTATGAATCCTGCATTAATCGGCGATTTGAGCAACCCCGCTGGGAGCATAGACTTTGATGGTTCACAGCAGCAGTTCACCGGCTTTTCGATCGGTTTGCAGCAGCAGGATCAGTTGCAAGGAAACATAGGGACATCAGAAAATGAAGGGGGGTTCAGGAAGAACGTGAGTAGTAGCAGTACAAGCCATTGGGGAACCAGCAGCATCAGATCAATTGGATTTCCATTCAGTTTGGCTTCAGATGATGAGGCTTGGAAGCCAACTCTGCCTTCTGATTCACCACCCTGTCCTAGTAGCTATTCTACAAACAAGTGCTACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009786 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0017145 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045770 GO:0048103 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051781 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

379

Amino Acids

42.59

Weight (kDa)

6.47

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	16 - 141	1.2e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39820
fragaria_vesca	FvH4_6g48740
malus_domestica	MD09G1050400.v1.1 MD17G1050600.v1.1
prunus_persica	Prupe.3G268400_v2.0.a1
pyrus_communis	pycom111g04150 pycom17g04550
rosa_chinensis	RchiOBHm_Chr2g0168651
rosa_laevigata	RLG00000021794
rosa_multiflora	Rmu_sc0002416.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082810
rosa_rugosa	Rorug02G0534300
rosa_samantha	Rh2AG605100 Rh2BG618100 Rh2CG586300 Rh2DG628700
rosa_wichuraiana	Rw2G050160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	1 cut(s)	852
AclWI	GGATC	5 cut(s)	158, 180, 395, 649, 930
AcsI	RAATTY	1 cut(s)	413
AcuI	CTGAAG	1 cut(s)	1035
AdeI	CACNNNGTG	1 cut(s)	333
AfaI	GTAC	3 cut(s)	193, 212, 994
AfeI	AGCGCT	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	282
AflII	CTTAAG	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	618
AgeI	ACCGGT	1 cut(s)	796
AgsI	TTSAA	1 cut(s)	511
AjnI	CCWGG	1 cut(s)	46
AjuI	GAANNNNNNNTTGG	4 cut(s)	102, 134, 1066, 1098
AluBI	AGCT	9 cut(s)	79, 133, 184, 377, 443, 457, 609, 696, 1110
AluI	AGCT	9 cut(s)	79, 133, 184, 377, 443, 457, 609, 696, 1110
Alw21I	GWGCWC	1 cut(s)	541
AlwI	GGATC	5 cut(s)	158, 180, 395, 649, 930
Ama87I	CYCGRG	1 cut(s)	223
Aor51HI	AGCGCT	1 cut(s)	250
AoxI	GGCC	2 cut(s)	305, 555
ApeKI	GCWGC	5 cut(s)	377, 883, 913, 916, 1014
ApoI	RAATTY	1 cut(s)	413
AseI	ATTAAT	1 cut(s)	830
AsiGI	ACCGGT	1 cut(s)	796
AspLEI	GCGC	1 cut(s)	251
AspS9I	GGNCC	3 cut(s)	229, 555, 812
AsuC2I	CCSGG	2 cut(s)	196, 277
AsuHPI	GGTGA	3 cut(s)	786, 883, 1083
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	2 cut(s)	229, 812
BanI	GGYRCC	1 cut(s)	326
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	5 cut(s)	364, 895, 925, 928, 1026
BccI	CCATC	4 cut(s)	13, 691, 758, 866
BcgI	CGANNNNNNTGC	4 cut(s)	398, 432, 892, 926
BciT130I	CCWGG	1 cut(s)	48
BcnI	CCSGG	2 cut(s)	196, 277
BfaI	CTAG	2 cut(s)	252, 1104
BfmI	CTRYAG	2 cut(s)	364, 576
BfoI	RGCGCY	1 cut(s)	252
BfrI	CTTAAG	1 cut(s)	95
BisI	GCNGC	5 cut(s)	378, 884, 914, 917, 1015
BlsI	GCNGC	5 cut(s)	379, 885, 915, 918, 1016
Bme1390I	CCNGG	3 cut(s)	48, 196, 277
Bme18I	GGWCC	2 cut(s)	229, 812
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	3 cut(s)	229, 555, 812
BmiI	GGNNCC	4 cut(s)	230, 274, 328, 1009
BmrFI	CCNGG	3 cut(s)	48, 196, 277
BmsI	GCATC	2 cut(s)	396, 1026
BpuMI	CCSGG	2 cut(s)	196, 277
BsaJI	CCNNGG	4 cut(s)	167, 195, 224, 525
BsaWI	WCCGGW	3 cut(s)	240, 293, 796
BsaXI	ACNNNNNCTCC	4 cut(s)	191, 221, 605, 635
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse118I	RCCGGY	3 cut(s)	303, 796, 893
Bse1I	ACTGG	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	4 cut(s)	167, 195, 224, 525
BseGI	GGATG	2 cut(s)	61, 408
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseMII	CTCAG	3 cut(s)	447, 575, 611
BseNI	ACTGG	1 cut(s)	404
BseRI	GAGGAG	2 cut(s)	20, 89
BseXI	GCAGC	5 cut(s)	364, 895, 925, 928, 1026
BseYI	CCCAGC	1 cut(s)	854
BsgI	GTGCAG	1 cut(s)	610
Bsh1285I	CGRYCG	2 cut(s)	801, 906
BshFI	GGCC	2 cut(s)	307, 557
BshNI	GGYRCC	1 cut(s)	326
BshTI	ACCGGT	1 cut(s)	796
BsiEI	CGRYCG	2 cut(s)	801, 906
BsiHKAI	GWGCWC	1 cut(s)	541
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	7 cut(s)	195, 241, 276, 294, 304, 797, 894
BslFI	GGGAC	3 cut(s)	242, 337, 958
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmFI	GGGAC	3 cut(s)	242, 337, 958
BsnI	GGCC	2 cut(s)	307, 557
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	7 cut(s)	163, 172, 387, 641, 903, 922, 1022
Bsp19I	CCATGG	1 cut(s)	525
BspACI	CCGC	1 cut(s)	852
BspANI	GGCC	2 cut(s)	307, 557
BspCNI	CTCAG	3 cut(s)	446, 574, 610
BspLI	GGNNCC	4 cut(s)	230, 274, 328, 1009
BspPI	GGATC	5 cut(s)	158, 180, 395, 649, 930
BspT107I	GGYRCC	1 cut(s)	326
BspTI	CTTAAG	1 cut(s)	95
BsrFI	RCCGGY	3 cut(s)	303, 796, 893
BsrI	ACTGG	1 cut(s)	404
BssAI	RCCGGY	3 cut(s)	303, 796, 893
BssECI	CCNNGG	4 cut(s)	167, 195, 224, 525
BssMI	GATC	7 cut(s)	163, 172, 387, 641, 903, 922, 1022
BssT1I	CCWWGG	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	720
BstAFI	CTTAAG	1 cut(s)	95
BstAPI	GCANNNNNTGC	1 cut(s)	333
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	4 cut(s)	433, 460, 561, 597
BstDSI	CCRYGG	2 cut(s)	167, 525
BstEII	GGTNACC	1 cut(s)	420
BstF5I	GGATG	2 cut(s)	61, 408
BstH2I	RGCGCY	1 cut(s)	252
BstHHI	GCGC	1 cut(s)	251
BstKTI	GATC	7 cut(s)	166, 175, 390, 644, 906, 925, 1025
BstMBI	GATC	7 cut(s)	163, 172, 387, 641, 903, 922, 1022
BstMCI	CGRYCG	2 cut(s)	801, 906
BstMWI	GCNNNNNNNGC	6 cut(s)	139, 333, 536, 843, 996, 1078
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	1 cut(s)	622
BstPI	GGTNACC	1 cut(s)	420
BstSCI	CCNGG	3 cut(s)	46, 194, 275
BstSFI	CTRYAG	2 cut(s)	364, 576
BstV1I	GCAGC	5 cut(s)	364, 895, 925, 928, 1026
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	307, 557
BtgI	CCRYGG	2 cut(s)	167, 525
BtsCI	GGATG	2 cut(s)	61, 408
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	1 cut(s)	251
Cfr10I	RCCGGY	3 cut(s)	303, 796, 893
Cfr13I	GGNCC	3 cut(s)	229, 555, 812
CseI	GACGC	1 cut(s)	570
CsiI	ACCWGGT	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	192, 211, 993
CspAI	ACCGGT	1 cut(s)	796
CviAII	CATG	7 cut(s)	489, 526, 619, 637, 649, 757, 787
CviQI	GTAC	3 cut(s)	192, 211, 993
DdeI	CTNAG	4 cut(s)	433, 460, 561, 597
DpnI	GATC	7 cut(s)	165, 174, 389, 643, 905, 924, 1024
DpnII	GATC	7 cut(s)	163, 172, 387, 641, 903, 922, 1022
DraIII	CACNNNGTG	1 cut(s)	333
Eam1104I	CTCTTC	1 cut(s)	720
EarI	CTCTTC	1 cut(s)	720
Eco130I	CCWWGG	1 cut(s)	525
Eco47I	GGWCC	2 cut(s)	229, 812
Eco47III	AGCGCT	1 cut(s)	250
Eco57I	CTGAAG	1 cut(s)	1035
Eco88I	CYCGRG	1 cut(s)	223
Eco91I	GGTNACC	1 cut(s)	420
EcoO109I	RGGNCCY	1 cut(s)	812
EcoO65I	GGTNACC	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	7 cut(s)	492, 529, 622, 640, 652, 760, 790
FaqI	GGGAC	3 cut(s)	242, 337, 958
FatI	CATG	7 cut(s)	488, 525, 618, 636, 648, 756, 786
FauI	CCCGC	1 cut(s)	859
Fnu4HI	GCNGC	5 cut(s)	378, 884, 914, 917, 1015
FokI	GGATG	2 cut(s)	48, 415
Fsp4HI	GCNGC	5 cut(s)	378, 884, 914, 917, 1015
FspBI	CTAG	2 cut(s)	252, 1104
GlaI	GCGC	1 cut(s)	250
GluI	GCNGC	5 cut(s)	378, 884, 914, 917, 1015
GsaI	CCCAGC	1 cut(s)	858
HaeII	RGCGCY	1 cut(s)	252
HaeIII	GGCC	2 cut(s)	307, 557
HapII	CCGG	7 cut(s)	195, 241, 276, 294, 304, 797, 894
HgaI	GACGC	1 cut(s)	570
HhaI	GCGC	1 cut(s)	251
Hin1II	CATG	7 cut(s)	492, 529, 622, 640, 652, 760, 790
Hin6I	GCGC	1 cut(s)	249
HinP1I	GCGC	1 cut(s)	249
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	694
HinfI	GANTC	6 cut(s)	264, 437, 485, 743, 820, 1088
HpaII	CCGG	7 cut(s)	195, 241, 276, 294, 304, 797, 894
HphI	GGTGA	3 cut(s)	786, 883, 1083
Hpy166II	GTNNAC	3 cut(s)	148, 878, 891
Hpy188I	TCNGA	9 cut(s)	66, 180, 322, 436, 613, 952, 1022, 1054, 1087
Hpy188III	TCNNGA	4 cut(s)	511, 569, 810, 970
Hpy8I	GTNNAC	3 cut(s)	148, 878, 891
HpyAV	CCTTC	5 cut(s)	280, 317, 435, 953, 1092
HpyCH4IV	ACGT	1 cut(s)	978
HpyCH4V	TGCA	9 cut(s)	336, 409, 501, 627, 652, 676, 827, 913, 931
HpyF10VI	GCNNNNNNNGC	6 cut(s)	139, 333, 536, 843, 996, 1078
HpyF3I	CTNAG	4 cut(s)	433, 460, 561, 597
HpySE526I	ACGT	1 cut(s)	978
Hsp92II	CATG	7 cut(s)	492, 529, 622, 640, 652, 760, 790
HspAI	GCGC	1 cut(s)	249
Kzo9I	GATC	7 cut(s)	163, 172, 387, 641, 903, 922, 1022
LmnI	GCTCC	4 cut(s)	76, 272, 448, 858
Lsp1109I	GCAGC	5 cut(s)	364, 895, 925, 928, 1026
LweI	GCATC	2 cut(s)	396, 1026
MabI	ACCWGGT	1 cut(s)	46
MaeI	CTAG	2 cut(s)	252, 1104
MaeII	ACGT	1 cut(s)	978
MaeIII	GTNAC	2 cut(s)	265, 420
MalI	GATC	7 cut(s)	165, 174, 389, 643, 905, 924, 1024
MboI	GATC	7 cut(s)	163, 172, 387, 641, 903, 922, 1022
MboII	GAAGA	6 cut(s)	22, 113, 167, 309, 707, 985
MfeI	CAATTG	1 cut(s)	1026
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	4 cut(s)	413, 495, 586, 1026
MlyI	GAGTC	2 cut(s)	273, 752
MmeI	TCCRAC	2 cut(s)	89, 133
MnlI	CCTC	9 cut(s)	67, 108, 219, 362, 482, 486, 568, 763, 1054
MseI	TTAA	4 cut(s)	96, 138, 344, 830
MspA1I	CMGCKG	1 cut(s)	854
MspCI	CTTAAG	1 cut(s)	95
MspI	CCGG	7 cut(s)	195, 241, 276, 294, 304, 797, 894
MspR9I	CCNGG	3 cut(s)	48, 196, 277
MunI	CAATTG	1 cut(s)	1026
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	6 cut(s)	139, 333, 536, 843, 996, 1078
NciI	CCSGG	2 cut(s)	196, 277
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	7 cut(s)	163, 172, 387, 641, 903, 922, 1022
NlaIII	CATG	7 cut(s)	492, 529, 622, 640, 652, 760, 790
NlaIV	GGNNCC	4 cut(s)	230, 274, 328, 1009
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	622
PciI	ACATGT	1 cut(s)	618
PfeI	GAWTC	4 cut(s)	437, 485, 820, 1088
PinAI	ACCGGT	1 cut(s)	796
PkrI	GCNGC	5 cut(s)	379, 885, 915, 918, 1016
Ple19I	CGATCG	1 cut(s)	906
PleI	GAGTC	2 cut(s)	272, 751
PpsI	GAGTC	2 cut(s)	272, 751
PpuMI	RGGWCCY	1 cut(s)	812
PscI	ACATGT	1 cut(s)	618
PshBI	ATTAAT	1 cut(s)	830
PsiI	TTATAA	1 cut(s)	156
Psp5II	RGGWCCY	1 cut(s)	812
Psp6I	CCWGG	1 cut(s)	46
PspEI	GGTNACC	1 cut(s)	420
PspFI	CCCAGC	1 cut(s)	854
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	4 cut(s)	230, 274, 328, 1009
PspPI	GGNCC	3 cut(s)	229, 555, 812
PspPPI	RGGWCCY	1 cut(s)	812
PsuI	RGATCY	1 cut(s)	172
PvuI	CGATCG	1 cut(s)	906
RsaI	GTAC	3 cut(s)	193, 212, 994
RsaNI	GTAC	3 cut(s)	192, 211, 993
SaqAI	TTAA	4 cut(s)	96, 138, 344, 830
SatI	GCNGC	5 cut(s)	378, 884, 914, 917, 1015
Sau3AI	GATC	7 cut(s)	163, 172, 387, 641, 903, 922, 1022
Sau96I	GGNCC	3 cut(s)	229, 555, 812
SchI	GAGTC	2 cut(s)	273, 752
ScrFI	CCNGG	3 cut(s)	48, 196, 277
SduI	GDGCHC	1 cut(s)	541
SexAI	ACCWGGT	1 cut(s)	46
SfaNI	GCATC	2 cut(s)	396, 1026
SfcI	CTRYAG	2 cut(s)	364, 576
SinI	GGWCC	2 cut(s)	229, 812
SmlI	CTYRAG	1 cut(s)	95
SmoI	CTYRAG	1 cut(s)	95
Sse9I	AATT	4 cut(s)	413, 495, 586, 1026
SsiI	CCGC	1 cut(s)	852
SspMI	CTAG	2 cut(s)	252, 1104
StyD4I	CCNGG	3 cut(s)	46, 194, 275
StyI	CCWWGG	1 cut(s)	525
TaiI	ACGT	1 cut(s)	981
TaqI	TCGA	4 cut(s)	262, 746, 801, 902
TaqII	GACCGA	1 cut(s)	246
TasI	AATT	4 cut(s)	413, 495, 586, 1026
TatI	WGTACW	1 cut(s)	992
TfiI	GAWTC	4 cut(s)	437, 485, 820, 1088
Tru1I	TTAA	4 cut(s)	96, 138, 344, 830
Tru9I	TTAA	4 cut(s)	96, 138, 344, 830
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	5 cut(s)	377, 883, 913, 916, 1014
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	5 cut(s)	50, 477, 775, 833, 972
TspGWI	ACGGA	1 cut(s)	156
Vha464I	CTTAAG	1 cut(s)	95
VpaK11BI	GGWCC	2 cut(s)	229, 812
VspI	ATTAAT	1 cut(s)	830
XapI	RAATTY	1 cut(s)	413
XceI	RCATGY	1 cut(s)	622
XcmI	CCANNNNNNNNNTGG	1 cut(s)	486
XspI	CTAG	2 cut(s)	252, 1104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.