Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0014555

Physical Location & Seq

Genomic Coordinates Forward (+)

25058115 .. 25060169

Gene Structure 2055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G268400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGATGAGAAGAATGACATGGACAAGATTGATGATGTGATGTTGCCTGGCTTTCGTTTTCATCCCACTGATGAGGAGCTCGTTGGGTTTTACCTCAGGAGAAAAATTCAGCAGAGGCTTCTCCCCATTGAGTTGATTAAGCAAGTTGACATTTACAAATATGATCCCTGGGATCTTCCAAAGCTGGCAAGTACTGGGGAGAAAGAATGGTACTTCTACTGCCCAAGAGACAGGAAATACAGGAACAGTGCTAGGCCTAATCGAGTCACAGGAGCTGGGTTTTGGAAAGCAACTGGAACAGACAGGCCTATTTATTCTTCTGAAGGCTCCAAGTGCATAGGTTTGAAGAAGTCCCTTGTGTTCTACAGGGGCAGAGCTGCTAAGGGGATCAAAACTGACTGGATGATGCATGAATTTCGGTTACCTTCTCTCTCAGAGTCGGCACCACCACCAAAAAAGCTCTTGGATAAAAGCCTTCCTGCAAATGATGCATGGGCCATTTGTAGGATTTTCAAGAAGACAAACTCCATGGCACAGAGAGCTCTTTCTCACTCTTGGGGGTCTCCATTCCCAGAACCTACAGCAGCATCTGGTTTACTCAATCAAGGTGCACACTGCACTCAGTTCAGCTCAGAGAACATGTCGTGCACAACTGACATAGGATCATCCATCCAGTTTTGGAGCAACAATGACTTGCAACAAGCTTCTAATGCCAGCTACTCTGCCTTTGACACTCTCCCTTATAAACCCATCAATCCCACAGGATCCAAACCCTCCATATTTGATGCAGATCAATTTCCCAATGGCTTCATGTTCTCTCCAGTGGAAATGTCAGGACCCATCAGCCCTGCCTTAATTGGTGATTTGAGTAACACAACTGGAAGCATAGACTTTGATGGTTCACAACAGCAACAGTTCAGCGGCTTTTCGATCAATTTGTCACAGAATCAGATGCAGGGAAACATGGAAACAAGAGAAAATGAAGGGGGCTTCAGGAAGAACTTAAGTAGTAGCACAAGCCATGCTAATAATAATAATAATAATAATAATGGCCAGTGGGGAAGCATCAGACCAATTGCATTTCCCTTCAGTTTGGCTTCAGATGATGATGCTTGGAAGCCTACTCTGCCATCAGATTCACCACCTTGTCCAAGTGACATGTCCACTAGCTATTCTACAAACAAATGCTACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009786 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0017145 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045770 GO:0048103 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051781 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

399

Amino Acids

44.49

Weight (kDa)

6.95

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39820
fragaria_vesca	FvH4_6g48740
malus_domestica	MD09G1050400.v1.1 MD17G1050600.v1.1
prunus_persica	Prupe.3G268400_v2.0.a1
pyrus_communis	pycom111g04150 pycom17g04550
rosa_chinensis	RchiOBHm_Chr2g0168651
rosa_laevigata	RLG00000021794
rosa_multiflora	Rmu_sc0002416.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082810
rosa_rugosa	Rorug02G0534300
rosa_samantha	Rh2AG605100 Rh2BG618100 Rh2CG586300 Rh2DG628700
rosa_wichuraiana	Rw2G050160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	744
AccB1I	GGYRCC	1 cut(s)	442
AciI	CCGC	1 cut(s)	921
AclWI	GGATC	6 cut(s)	158, 180, 395, 670, 759, 772
AcoI	YGGCCR	1 cut(s)	1051
AcsI	RAATTY	2 cut(s)	105, 413
AcuI	CTGAAG	4 cut(s)	342, 976, 1072, 1083
AfaI	GTAC	2 cut(s)	193, 212
AfiI	CCNNNNNNNGG	1 cut(s)	504
AflII	CTTAAG	1 cut(s)	1003
AflIII	ACRYGT	2 cut(s)	639, 1158
AgsI	TTSAA	2 cut(s)	346, 514
AjnI	CCWGG	2 cut(s)	46, 167
Alw21I	GWGCWC	4 cut(s)	81, 544, 613, 650
Alw26I	GTCTC	2 cut(s)	222, 567
Alw44I	GTGCAC	2 cut(s)	609, 646
AlwI	GGATC	6 cut(s)	158, 180, 395, 670, 759, 772
AlwNI	CAGNNNCTG	2 cut(s)	275, 590
AoxI	GGCC	4 cut(s)	254, 305, 495, 1051
ApaLI	GTGCAC	2 cut(s)	609, 646
ApeKI	GCWGC	2 cut(s)	377, 584
ApoI	RAATTY	2 cut(s)	105, 413
AspS9I	GGNCC	2 cut(s)	495, 836
AsuHPI	GGTGA	2 cut(s)	872, 1131
AvaII	GGWCC	1 cut(s)	836
AxyI	CCTNAGG	1 cut(s)	95
BaeGI	GKGCMC	2 cut(s)	613, 650
BalI	TGGCCA	1 cut(s)	1053
BamHI	GGATCC	1 cut(s)	764
BanI	GGYRCC	1 cut(s)	442
BanII	GRGCYC	2 cut(s)	81, 544
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	4 cut(s)	81, 544, 613, 650
BbvI	GCAGC	2 cut(s)	364, 596
BccI	CCATC	5 cut(s)	677, 758, 848, 890, 1138
BcgI	CGANNNNNNTGC	2 cut(s)	398, 432
BciT130I	CCWGG	2 cut(s)	48, 169
BcoDI	GTCTC	2 cut(s)	222, 567
BfaI	CTAG	2 cut(s)	252, 1167
BfmI	CTRYAG	2 cut(s)	364, 579
BfrI	CTTAAG	1 cut(s)	1003
BisI	GCNGC	3 cut(s)	378, 585, 922
BlsI	GCNGC	3 cut(s)	379, 586, 923
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	48, 169
Bme18I	GGWCC	1 cut(s)	836
BmgT120I	GGNCC	2 cut(s)	495, 836
BmiI	GGNNCC	4 cut(s)	328, 444, 766, 838
BmrFI	CCNGG	2 cut(s)	48, 169
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	7 cut(s)	396, 478, 596, 775, 942, 1074, 1099
BmuI	ACTGGG	1 cut(s)	204
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	804
Bpu10I	CCTNAGC	1 cut(s)	381
BsaBI	GATNNNNATC	1 cut(s)	789
BsaI	GGTCTC	1 cut(s)	567
BsaJI	CCNNGG	3 cut(s)	167, 168, 528
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
Bse1I	ACTGG	7 cut(s)	199, 298, 404, 673, 821, 883, 1054
Bse21I	CCTNAGG	1 cut(s)	95
Bse8I	GATNNNNATC	1 cut(s)	789
BseBI	CCWGG	2 cut(s)	48, 169
BseDI	CCNNGG	3 cut(s)	167, 168, 528
BseGI	GGATG	5 cut(s)	10, 61, 408, 665, 669
BseJI	GATNNNNATC	1 cut(s)	789
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseMII	CTCAG	4 cut(s)	109, 447, 635, 645
BseNI	ACTGG	7 cut(s)	199, 298, 404, 673, 821, 883, 1054
BseRI	GAGGAG	1 cut(s)	89
BseSI	GKGCMC	2 cut(s)	613, 650
BseXI	GCAGC	2 cut(s)	364, 596
BseYI	CCCAGC	1 cut(s)	275
BsgI	GTGCAG	1 cut(s)	601
BshFI	GGCC	4 cut(s)	256, 307, 497, 1053
BshNI	GGYRCC	1 cut(s)	442
BsiHKAI	GWGCWC	4 cut(s)	81, 544, 613, 650
BslFI	GGGAC	1 cut(s)	337
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	2 cut(s)	222, 567
BsmFI	GGGAC	1 cut(s)	337
BsnI	GGCC	4 cut(s)	256, 307, 497, 1053
Bso31I	GGTCTC	1 cut(s)	567
Bsp1286I	GDGCHC	4 cut(s)	81, 544, 613, 650
Bsp143I	GATC	7 cut(s)	163, 172, 387, 662, 764, 790, 930
Bsp19I	CCATGG	1 cut(s)	528
BspACI	CCGC	1 cut(s)	921
BspANI	GGCC	4 cut(s)	256, 307, 497, 1053
BspCNI	CTCAG	4 cut(s)	108, 446, 634, 644
BspLI	GGNNCC	4 cut(s)	328, 444, 766, 838
BspPI	GGATC	6 cut(s)	158, 180, 395, 670, 759, 772
BspT107I	GGYRCC	1 cut(s)	442
BspTI	CTTAAG	1 cut(s)	1003
BspTNI	GGTCTC	1 cut(s)	567
BsrI	ACTGG	7 cut(s)	199, 298, 404, 673, 821, 883, 1054
BssECI	CCNNGG	3 cut(s)	167, 168, 528
BssMI	GATC	7 cut(s)	163, 172, 387, 662, 764, 790, 930
BssT1I	CCWWGG	1 cut(s)	528
Bst2UI	CCWGG	2 cut(s)	48, 169
Bst4CI	ACNGT	2 cut(s)	248, 915
BstAFI	CTTAAG	1 cut(s)	1003
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	2 cut(s)	186, 715
BstDEI	CTNAG	5 cut(s)	95, 381, 433, 621, 631
BstDSI	CCRYGG	1 cut(s)	528
BstEII	GGTNACC	1 cut(s)	420
BstF5I	GGATG	5 cut(s)	10, 61, 408, 665, 669
BstKTI	GATC	7 cut(s)	166, 175, 390, 665, 767, 793, 933
BstMAI	GTCTC	2 cut(s)	222, 567
BstMBI	GATC	7 cut(s)	163, 172, 387, 662, 764, 790, 930
BstMWI	GCNNNNNNNGC	5 cut(s)	333, 488, 539, 710, 1126
BstNI	CCWGG	2 cut(s)	48, 169
BstNSI	RCATGY	2 cut(s)	643, 1162
BstPI	GGTNACC	1 cut(s)	420
BstSCI	CCNGG	2 cut(s)	46, 167
BstSFI	CTRYAG	2 cut(s)	364, 579
BstSLI	GKGCMC	2 cut(s)	613, 650
BstV1I	GCAGC	2 cut(s)	364, 596
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	2 cut(s)	172, 764
BstYI	RGATCY	2 cut(s)	172, 764
Bsu36I	CCTNAGG	1 cut(s)	95
BsuRI	GGCC	4 cut(s)	256, 307, 497, 1053
BtgI	CCRYGG	1 cut(s)	528
BtsCI	GGATG	5 cut(s)	10, 61, 408, 665, 669
BtsI	GCAGTG	1 cut(s)	613
BtsIMutI	CAGTG	5 cut(s)	66, 253, 613, 828, 1061
Cac8I	GCNNGC	2 cut(s)	186, 715
CaiI	CAGNNNCTG	2 cut(s)	275, 590
Cfr13I	GGNCC	2 cut(s)	495, 836
Csp6I	GTAC	2 cut(s)	192, 211
CviAII	CATG	9 cut(s)	19, 410, 492, 529, 640, 811, 964, 1022, 1159
CviQI	GTAC	2 cut(s)	192, 211
DdeI	CTNAG	5 cut(s)	95, 381, 433, 621, 631
DpnI	GATC	7 cut(s)	165, 174, 389, 664, 766, 792, 932
DpnII	GATC	7 cut(s)	163, 172, 387, 662, 764, 790, 930
EaeI	YGGCCR	1 cut(s)	1051
Ecl136II	GAGCTC	2 cut(s)	79, 542
Eco130I	CCWWGG	1 cut(s)	528
Eco147I	AGGCCT	2 cut(s)	256, 307
Eco24I	GRGCYC	2 cut(s)	81, 544
Eco31I	GGTCTC	1 cut(s)	567
Eco47I	GGWCC	1 cut(s)	836
Eco53kI	GAGCTC	2 cut(s)	79, 542
Eco57I	CTGAAG	4 cut(s)	342, 976, 1072, 1083
Eco81I	CCTNAGG	1 cut(s)	95
Eco91I	GGTNACC	1 cut(s)	420
EcoICRI	GAGCTC	2 cut(s)	79, 542
EcoO109I	RGGNCCY	1 cut(s)	836
EcoO65I	GGTNACC	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	46, 167
EcoT14I	CCWWGG	1 cut(s)	528
EcoT22I	ATGCAT	2 cut(s)	411, 493
EcoT38I	GRGCYC	2 cut(s)	81, 544
ErhI	CCWWGG	1 cut(s)	528
FaeI	CATG	9 cut(s)	22, 413, 495, 532, 643, 814, 967, 1025, 1162
FaqI	GGGAC	1 cut(s)	337
FatI	CATG	9 cut(s)	18, 409, 491, 528, 639, 810, 963, 1021, 1158
Fnu4HI	GCNGC	3 cut(s)	378, 585, 922
FokI	GGATG	5 cut(s)	17, 48, 415, 652, 656
FriOI	GRGCYC	2 cut(s)	81, 544
Fsp4HI	GCNGC	3 cut(s)	378, 585, 922
FspBI	CTAG	2 cut(s)	252, 1167
GluI	GCNGC	3 cut(s)	378, 585, 922
GsaI	CCCAGC	1 cut(s)	279
GsuI	CTGGAG	1 cut(s)	804
HaeIII	GGCC	4 cut(s)	256, 307, 497, 1053
Hin1II	CATG	9 cut(s)	22, 413, 495, 532, 643, 814, 967, 1025, 1162
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	702
HinfI	GANTC	4 cut(s)	264, 437, 946, 1136
HphI	GGTGA	2 cut(s)	872, 1131
Hpy166II	GTNNAC	6 cut(s)	148, 596, 611, 648, 902, 1164
Hpy188I	TCNGA	7 cut(s)	322, 436, 634, 951, 1070, 1102, 1135
Hpy188III	TCNNGA	4 cut(s)	97, 514, 834, 994
Hpy8I	GTNNAC	6 cut(s)	148, 596, 611, 648, 902, 1164
HpyAV	CCTTC	5 cut(s)	317, 435, 485, 977, 1096
HpyCH4III	ACNGT	2 cut(s)	248, 915
HpyF10VI	GCNNNNNNNGC	5 cut(s)	333, 488, 539, 710, 1126
HpyF3I	CTNAG	5 cut(s)	95, 381, 433, 621, 631
Hsp92II	CATG	9 cut(s)	22, 413, 495, 532, 643, 814, 967, 1025, 1162
Kzo9I	GATC	7 cut(s)	163, 172, 387, 662, 764, 790, 930
LmnI	GCTCC	4 cut(s)	76, 272, 332, 681
Lsp1109I	GCAGC	2 cut(s)	364, 596
LweI	GCATC	7 cut(s)	396, 478, 596, 775, 942, 1074, 1099
MaeI	CTAG	2 cut(s)	252, 1167
MaeIII	GTNAC	5 cut(s)	265, 420, 869, 939, 1154
MalI	GATC	7 cut(s)	165, 174, 389, 664, 766, 792, 932
MboI	GATC	7 cut(s)	163, 172, 387, 662, 764, 790, 930
MboII	GAAGA	6 cut(s)	22, 167, 309, 358, 529, 1009
MfeI	CAATTG	1 cut(s)	1074
MflI	RGATCY	2 cut(s)	172, 764
MhlI	GDGCHC	4 cut(s)	81, 544, 613, 650
MlsI	TGGCCA	1 cut(s)	1053
MluCI	AATT	6 cut(s)	105, 413, 794, 855, 934, 1074
MluNI	TGGCCA	1 cut(s)	1053
MlyI	GAGTC	2 cut(s)	273, 446
MnlI	CCTC	4 cut(s)	67, 104, 108, 784
Mox20I	TGGCCA	1 cut(s)	1053
Mph1103I	ATGCAT	2 cut(s)	411, 493
MscI	TGGCCA	1 cut(s)	1053
MseI	TTAA	3 cut(s)	138, 854, 1004
Msp20I	TGGCCA	1 cut(s)	1053
MspA1I	CMGCKG	1 cut(s)	921
MspCI	CTTAAG	1 cut(s)	1003
MspR9I	CCNGG	2 cut(s)	48, 169
MunI	CAATTG	1 cut(s)	1074
MvaI	CCWGG	2 cut(s)	48, 169
MwoI	GCNNNNNNNGC	5 cut(s)	333, 488, 539, 710, 1126
NcoI	CCATGG	1 cut(s)	528
NdeII	GATC	7 cut(s)	163, 172, 387, 662, 764, 790, 930
NlaIII	CATG	9 cut(s)	22, 413, 495, 532, 643, 814, 967, 1025, 1162
NlaIV	GGNNCC	4 cut(s)	328, 444, 766, 838
NmuCI	GTSAC	3 cut(s)	265, 939, 1154
NsiI	ATGCAT	2 cut(s)	411, 493
NspI	RCATGY	2 cut(s)	643, 1162
PasI	CCCWGGG	1 cut(s)	168
PceI	AGGCCT	2 cut(s)	256, 307
PciI	ACATGT	2 cut(s)	639, 1158
PfeI	GAWTC	2 cut(s)	946, 1136
PkrI	GCNGC	3 cut(s)	379, 586, 923
PleI	GAGTC	2 cut(s)	272, 445
PpsI	GAGTC	2 cut(s)	272, 445
PpuMI	RGGWCCY	1 cut(s)	836
PscI	ACATGT	2 cut(s)	639, 1158
PsiI	TTATAA	1 cut(s)	744
Psp124BI	GAGCTC	2 cut(s)	81, 544
Psp5II	RGGWCCY	1 cut(s)	836
Psp6I	CCWGG	2 cut(s)	46, 167
PspEI	GGTNACC	1 cut(s)	420
PspFI	CCCAGC	1 cut(s)	275
PspGI	CCWGG	2 cut(s)	46, 167
PspN4I	GGNNCC	4 cut(s)	328, 444, 766, 838
PspPI	GGNCC	2 cut(s)	495, 836
PspPPI	RGGWCCY	1 cut(s)	836
PstNI	CAGNNNCTG	2 cut(s)	275, 590
PsuI	RGATCY	2 cut(s)	172, 764
RsaI	GTAC	2 cut(s)	193, 212
RsaNI	GTAC	2 cut(s)	192, 211
SacI	GAGCTC	2 cut(s)	81, 544
SaqAI	TTAA	3 cut(s)	138, 854, 1004
SatI	GCNGC	3 cut(s)	378, 585, 922
Sau3AI	GATC	7 cut(s)	163, 172, 387, 662, 764, 790, 930
Sau96I	GGNCC	2 cut(s)	495, 836
ScaI	AGTACT	1 cut(s)	193
SchI	GAGTC	2 cut(s)	273, 446
ScrFI	CCNGG	2 cut(s)	48, 169
SduI	GDGCHC	4 cut(s)	81, 544, 613, 650
SfaNI	GCATC	7 cut(s)	396, 478, 596, 775, 942, 1074, 1099
SfcI	CTRYAG	2 cut(s)	364, 579
SinI	GGWCC	1 cut(s)	836
SmlI	CTYRAG	1 cut(s)	1003
SmoI	CTYRAG	1 cut(s)	1003
Sse9I	AATT	6 cut(s)	105, 413, 794, 855, 934, 1074
SseBI	AGGCCT	2 cut(s)	256, 307
SsiI	CCGC	1 cut(s)	921
SspMI	CTAG	2 cut(s)	252, 1167
SstI	GAGCTC	2 cut(s)	81, 544
StuI	AGGCCT	2 cut(s)	256, 307
StyD4I	CCNGG	2 cut(s)	46, 167
StyI	CCWWGG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	248, 915
TaqI	TCGA	2 cut(s)	262, 929
TasI	AATT	6 cut(s)	105, 413, 794, 855, 934, 1074
TatI	WGTACW	1 cut(s)	191
TauI	GCSGC	1 cut(s)	924
TfiI	GAWTC	2 cut(s)	946, 1136
Tru1I	TTAA	3 cut(s)	138, 854, 1004
Tru9I	TTAA	3 cut(s)	138, 854, 1004
TscAI	CASTG	5 cut(s)	73, 253, 620, 828, 1061
TseFI	GTSAC	3 cut(s)	265, 939, 1154
TseI	GCWGC	2 cut(s)	377, 584
Tsp45I	GTSAC	3 cut(s)	265, 939, 1154
TspDTI	ATGAA	4 cut(s)	50, 426, 799, 996
TspRI	CASTG	5 cut(s)	73, 253, 620, 828, 1061
Vha464I	CTTAAG	1 cut(s)	1003
VneI	GTGCAC	2 cut(s)	609, 646
VpaK11BI	GGWCC	1 cut(s)	836
XapI	RAATTY	2 cut(s)	105, 413
XceI	RCATGY	2 cut(s)	643, 1162
XspI	CTAG	2 cut(s)	252, 1167
ZrmI	AGTACT	1 cut(s)	193
Zsp2I	ATGCAT	2 cut(s)	411, 493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.