Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0014555

Physical Location & Seq

Genomic Coordinates Reverse (-)

3745600 .. 3747921

Gene Structure 2322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1050600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGGAGCAGAAGAATGAGATGGAAAAGGTTGATGATGTGATGTTGCCGGGTTTTCGGTTTCACCCGACCGATGAGGAGCTTGTAGGGTTTTACCTGAAGAGAAAAATCCAGCAGAGGGTTCTTCCCATTGAGCTGATCAAGCAAGTTGACATTTATAAATATGATCCCTGGGATCTTCCAAAGCTGGCAAGTACTGGGGAGAAAGAGTGGTACTTCTACTGCCCGAGGGACCGAAAATACAAGAACAGCACCAGGCCTAATCGCGTCACAGGAGCCGGGTTTTGGAAAGCAACCGGAACAGACCGGCCTATCTATTCTTCGGAAGGCTCCAAGTGCATAGGTTTAAAGAAGTCCCTTGTGTTCTACAGAGGCAGAGCTGCAAAAGGGATCAAAACTGACTGGATGATGCACGAGTTTCGGTTGCCTTCTCTCTCAAATTCAGTTCCACCAAAAAAGCTCTTAGATAAAAGCCTCCCTGCAAATGATTCATGGGCAATTTGCAGGATTTTCAAGAAAACAAACTCCATGGCACAGAGAGCACTTTCTCACTCTTGGGACTCTCAGTTTCCAGAGCCTAGAGCAGCTGGTTTATTCACTCAACAGTTCAGCTCAGAGAACATGTCTTGCACAACCGACATGGGATCAACCATGCAGTTTTGGAATAACAACGACTTGCAACAAGCATCTAACACAAACTACTCTTCCTTTGACACTCTTCCTTACAAACCAATCAACCCGACCGTGTTGAAACCCTCCATGTTTGATGGAGAGTTTCCCAACAGCCTCATGTTCTCGCCGGCTGAACTGTCAGGAACTATGAACCCTGCATTAATCGGTGATTTAAGCAACACCGTGGGGAGCATAGATTTCGATGGTTCACAGCAGCAGTTCACCAGCTTTTTGATCAGTTTGCAGCAACAGAATCAGATGCAAGGAAACACAGGGTCATCAGAAAACGAAGGGGGATTCAGGAAGAACATGAGTCGTAGTAGTAGTAGTAATAGTACAAGCCAGTGGGGAAGCAGCAGCATCAGAACAATTGGTTTTCCCTTCAGTTTGGCTTCAGATGATGAGGCTTGGAAGCCAACTCTGCCTTCTTATTCACCACCTTGTCCTAGTAGCTATTCTACTAACAAATGCTACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009786 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0017145 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045770 GO:0048103 GO:0048364 GO:0048518 GO:0048522 GO:0048731 GO:0048829 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051781 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

383

Amino Acids

43.19

Weight (kDa)

8.72

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	16 - 141	5e-48	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014555)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39820
fragaria_vesca	FvH4_6g48740
malus_domestica	MD09G1050400.v1.1 MD17G1050600.v1.1
prunus_persica	Prupe.3G268400_v2.0.a1
pyrus_communis	pycom111g04150 pycom17g04550
rosa_chinensis	RchiOBHm_Chr2g0168651
rosa_laevigata	RLG00000021794
rosa_multiflora	Rmu_sc0002416.1_g000005
rosa_roxburghii	Rroxscaffold_2G00082810
rosa_rugosa	Rorug02G0534300
rosa_samantha	Rh2AG605100 Rh2BG618100 Rh2CG586300 Rh2DG628700
rosa_wichuraiana	Rw2G050160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	156
AccII	CGCG	1 cut(s)	264
AclWI	GGATC	4 cut(s)	158, 180, 395, 649
AcsI	RAATTY	1 cut(s)	436
AcuI	CTGAAG	3 cut(s)	116, 1036, 1047
AfaI	GTAC	3 cut(s)	193, 212, 1006
AfiI	CCNNNNNNNGG	2 cut(s)	115, 282
AflIII	ACRYGT	1 cut(s)	618
AgsI	TTSAA	2 cut(s)	511, 748
AjnI	CCWGG	2 cut(s)	167, 251
AjuI	GAANNNNNNNTTGG	2 cut(s)	1078, 1110
AluBI	AGCT	9 cut(s)	79, 133, 184, 377, 457, 584, 609, 897, 1122
AluI	AGCT	9 cut(s)	79, 133, 184, 377, 457, 584, 609, 897, 1122
Alw21I	GWGCWC	1 cut(s)	541
AlwI	GGATC	4 cut(s)	158, 180, 395, 649
Ama87I	CYCGRG	1 cut(s)	223
AoxI	GGCC	2 cut(s)	254, 305
ApeKI	GCWGC	6 cut(s)	377, 581, 883, 913, 1023, 1026
ApoI	RAATTY	1 cut(s)	436
AseI	ATTAAT	1 cut(s)	830
AspS9I	GGNCC	1 cut(s)	229
AsuC2I	CCSGG	2 cut(s)	48, 277
AsuHPI	GGTGA	4 cut(s)	53, 848, 883, 1095
AvaI	CYCGRG	1 cut(s)	223
AvaII	GGWCC	1 cut(s)	229
BauI	CACGAG	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	541
BbvI	GCAGC	6 cut(s)	364, 593, 895, 925, 1035, 1038
BccI	CCATC	3 cut(s)	13, 758, 866
BcgI	CGANNNNNNTGC	4 cut(s)	398, 432, 850, 884
BciT130I	CCWGG	2 cut(s)	169, 253
BclI	TGATCA	2 cut(s)	135, 903
BcnI	CCSGG	2 cut(s)	48, 277
BfaI	CTAG	2 cut(s)	576, 1116
BfmI	CTRYAG	1 cut(s)	364
BisI	GCNGC	6 cut(s)	378, 582, 884, 914, 1024, 1027
BlsI	GCNGC	6 cut(s)	379, 583, 885, 915, 1025, 1028
BmcAI	AGTACT	1 cut(s)	193
Bme1390I	CCNGG	4 cut(s)	48, 169, 253, 277
Bme18I	GGWCC	1 cut(s)	229
BmeT110I	CYCGRG	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	3 cut(s)	230, 274, 328
BmrFI	CCNGG	4 cut(s)	48, 169, 253, 277
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	4 cut(s)	396, 692, 918, 1038
BmuI	ACTGGG	1 cut(s)	204
BpuMI	CCSGG	2 cut(s)	48, 277
BsaJI	CCNNGG	5 cut(s)	167, 168, 224, 525, 852
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	115, 282
Bse118I	RCCGGY	2 cut(s)	303, 796
Bse1I	ACTGG	3 cut(s)	199, 404, 1012
BseBI	CCWGG	2 cut(s)	169, 253
BseDI	CCNNGG	5 cut(s)	167, 168, 224, 525, 852
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	2 cut(s)	115, 282
BseMII	CTCAG	2 cut(s)	575, 624
BseNI	ACTGG	3 cut(s)	199, 404, 1012
BseRI	GAGGAG	1 cut(s)	89
BseXI	GCAGC	6 cut(s)	364, 593, 895, 925, 1035, 1038
Bsh1236I	CGCG	1 cut(s)	264
Bsh1285I	CGRYCG	2 cut(s)	69, 741
BshFI	GGCC	2 cut(s)	256, 307
BsiEI	CGRYCG	2 cut(s)	69, 741
BsiHKAI	GWGCWC	1 cut(s)	541
BsiHKCI	CYCGRG	1 cut(s)	223
BsiSI	CCGG	5 cut(s)	47, 276, 294, 304, 797
BslFI	GGGAC	3 cut(s)	242, 337, 569
BslI	CCNNNNNNNGG	2 cut(s)	115, 282
BsmFI	GGGAC	3 cut(s)	242, 337, 569
BsnI	GGCC	2 cut(s)	256, 307
BsoBI	CYCGRG	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	541
Bsp143I	GATC	6 cut(s)	135, 163, 172, 387, 641, 903
Bsp19I	CCATGG	1 cut(s)	525
BspANI	GGCC	2 cut(s)	256, 307
BspCNI	CTCAG	2 cut(s)	574, 623
BspFNI	CGCG	1 cut(s)	264
BspLI	GGNNCC	3 cut(s)	230, 274, 328
BspPI	GGATC	4 cut(s)	158, 180, 395, 649
BsrFI	RCCGGY	2 cut(s)	303, 796
BsrI	ACTGG	3 cut(s)	199, 404, 1012
BssAI	RCCGGY	2 cut(s)	303, 796
BssECI	CCNNGG	5 cut(s)	167, 168, 224, 525, 852
BssMI	GATC	6 cut(s)	135, 163, 172, 387, 641, 903
BssSI	CACGAG	1 cut(s)	410
BssT1I	CCWWGG	1 cut(s)	525
Bst2BI	CACGAG	1 cut(s)	410
Bst2UI	CCWGG	2 cut(s)	169, 253
Bst4CI	ACNGT	4 cut(s)	603, 742, 807, 853
Bst6I	CTCTTC	3 cut(s)	92, 706, 720
BstC8I	GCNNGC	2 cut(s)	186, 798
BstDEI	CTNAG	3 cut(s)	460, 561, 610
BstDSI	CCRYGG	2 cut(s)	525, 852
BstF5I	GGATG	1 cut(s)	408
BstFNI	CGCG	1 cut(s)	264
BstKTI	GATC	6 cut(s)	138, 166, 175, 390, 644, 906
BstMBI	GATC	6 cut(s)	135, 163, 172, 387, 641, 903
BstMCI	CGRYCG	2 cut(s)	69, 741
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 333, 536, 1090
BstNI	CCWGG	2 cut(s)	169, 253
BstNSI	RCATGY	1 cut(s)	622
BstSCI	CCNGG	4 cut(s)	46, 167, 251, 275
BstSFI	CTRYAG	1 cut(s)	364
BstUI	CGCG	1 cut(s)	264
BstV1I	GCAGC	6 cut(s)	364, 593, 895, 925, 1035, 1038
BstX2I	RGATCY	1 cut(s)	172
BstYI	RGATCY	1 cut(s)	172
BsuRI	GGCC	2 cut(s)	256, 307
BtgI	CCRYGG	2 cut(s)	525, 852
BtsCI	GGATG	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	1019
Cac8I	GCNNGC	2 cut(s)	186, 798
Cfr10I	RCCGGY	2 cut(s)	303, 796
Cfr13I	GGNCC	1 cut(s)	229
CseI	GACGC	1 cut(s)	253
Csp6I	GTAC	3 cut(s)	192, 211, 1005
CviAII	CATG	8 cut(s)	489, 526, 619, 637, 649, 757, 787, 979
CviQI	GTAC	3 cut(s)	192, 211, 1005
DdeI	CTNAG	3 cut(s)	460, 561, 610
DpnI	GATC	6 cut(s)	137, 165, 174, 389, 643, 905
DpnII	GATC	6 cut(s)	135, 163, 172, 387, 641, 903
DraI	TTTAAA	1 cut(s)	345
Eam1104I	CTCTTC	3 cut(s)	92, 706, 720
EarI	CTCTTC	3 cut(s)	92, 706, 720
Eco130I	CCWWGG	1 cut(s)	525
Eco147I	AGGCCT	1 cut(s)	256
Eco47I	GGWCC	1 cut(s)	229
Eco57I	CTGAAG	3 cut(s)	116, 1036, 1047
Eco88I	CYCGRG	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	167, 251
EcoT14I	CCWWGG	1 cut(s)	525
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	8 cut(s)	492, 529, 622, 640, 652, 760, 790, 982
FaqI	GGGAC	3 cut(s)	242, 337, 569
FatI	CATG	8 cut(s)	488, 525, 618, 636, 648, 756, 786, 978
FbaI	TGATCA	2 cut(s)	135, 903
Fnu4HI	GCNGC	6 cut(s)	378, 582, 884, 914, 1024, 1027
FokI	GGATG	1 cut(s)	415
Fsp4HI	GCNGC	6 cut(s)	378, 582, 884, 914, 1024, 1027
FspBI	CTAG	2 cut(s)	576, 1116
GluI	GCNGC	6 cut(s)	378, 582, 884, 914, 1024, 1027
HaeIII	GGCC	2 cut(s)	256, 307
HapII	CCGG	5 cut(s)	47, 276, 294, 304, 797
HgaI	GACGC	1 cut(s)	253
Hin1II	CATG	8 cut(s)	492, 529, 622, 640, 652, 760, 790, 982
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	5 cut(s)	485, 557, 922, 966, 982
HpaII	CCGG	5 cut(s)	47, 276, 294, 304, 797
HphI	GGTGA	4 cut(s)	53, 848, 883, 1095
Hpy166II	GTNNAC	3 cut(s)	148, 878, 891
Hpy188I	TCNGA	6 cut(s)	322, 613, 927, 952, 1034, 1066
Hpy188III	TCNNGA	4 cut(s)	511, 569, 810, 970
Hpy8I	GTNNAC	3 cut(s)	148, 878, 891
HpyAV	CCTTC	5 cut(s)	317, 435, 953, 1060, 1104
HpyCH4III	ACNGT	4 cut(s)	603, 742, 807, 853
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 333, 536, 1090
HpyF3I	CTNAG	3 cut(s)	460, 561, 610
Hsp92II	CATG	8 cut(s)	492, 529, 622, 640, 652, 760, 790, 982
KroI	GCCGGC	1 cut(s)	796
KroNI	GCCGGC	1 cut(s)	798
Ksp22I	TGATCA	2 cut(s)	135, 903
Kzo9I	GATC	6 cut(s)	135, 163, 172, 387, 641, 903
LmnI	GCTCC	5 cut(s)	4, 76, 272, 332, 858
Lsp1109I	GCAGC	6 cut(s)	364, 593, 895, 925, 1035, 1038
LweI	GCATC	4 cut(s)	396, 692, 918, 1038
MaeI	CTAG	2 cut(s)	576, 1116
MaeIII	GTNAC	1 cut(s)	265
MalI	GATC	6 cut(s)	137, 165, 174, 389, 643, 905
MboI	GATC	6 cut(s)	135, 163, 172, 387, 641, 903
MboII	GAAGA	8 cut(s)	22, 109, 113, 167, 309, 693, 707, 985
MfeI	CAATTG	1 cut(s)	1038
MflI	RGATCY	1 cut(s)	172
MhlI	GDGCHC	1 cut(s)	541
MluCI	AATT	3 cut(s)	436, 495, 1038
MlyI	GAGTC	2 cut(s)	551, 991
MnlI	CCTC	8 cut(s)	67, 108, 219, 362, 482, 763, 794, 1066
MroNI	GCCGGC	1 cut(s)	796
MseI	TTAA	3 cut(s)	344, 830, 842
MspA1I	CMGCKG	1 cut(s)	584
MspI	CCGG	5 cut(s)	47, 276, 294, 304, 797
MspR9I	CCNGG	4 cut(s)	48, 169, 253, 277
MunI	CAATTG	1 cut(s)	1038
MvaI	CCWGG	2 cut(s)	169, 253
MvnI	CGCG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	139, 333, 536, 1090
NaeI	GCCGGC	1 cut(s)	798
NciI	CCSGG	2 cut(s)	48, 277
NcoI	CCATGG	1 cut(s)	525
NdeII	GATC	6 cut(s)	135, 163, 172, 387, 641, 903
NgoMIV	GCCGGC	1 cut(s)	796
NlaIII	CATG	8 cut(s)	492, 529, 622, 640, 652, 760, 790, 982
NlaIV	GGNNCC	3 cut(s)	230, 274, 328
NmuCI	GTSAC	1 cut(s)	265
NspI	RCATGY	1 cut(s)	622
PasI	CCCWGGG	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	256
PciI	ACATGT	1 cut(s)	618
PdiI	GCCGGC	1 cut(s)	798
PfeI	GAWTC	3 cut(s)	485, 922, 966
PkrI	GCNGC	6 cut(s)	379, 583, 885, 915, 1025, 1028
PleI	GAGTC	2 cut(s)	551, 990
PpsI	GAGTC	2 cut(s)	551, 990
PscI	ACATGT	1 cut(s)	618
PshBI	ATTAAT	1 cut(s)	830
PsiI	TTATAA	1 cut(s)	156
Psp6I	CCWGG	2 cut(s)	167, 251
PspGI	CCWGG	2 cut(s)	167, 251
PspN4I	GGNNCC	3 cut(s)	230, 274, 328
PspPI	GGNCC	1 cut(s)	229
PsuI	RGATCY	1 cut(s)	172
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	3 cut(s)	193, 212, 1006
RsaNI	GTAC	3 cut(s)	192, 211, 1005
SaqAI	TTAA	3 cut(s)	344, 830, 842
SatI	GCNGC	6 cut(s)	378, 582, 884, 914, 1024, 1027
Sau3AI	GATC	6 cut(s)	135, 163, 172, 387, 641, 903
Sau96I	GGNCC	1 cut(s)	229
ScaI	AGTACT	1 cut(s)	193
SchI	GAGTC	2 cut(s)	551, 991
ScrFI	CCNGG	4 cut(s)	48, 169, 253, 277
SduI	GDGCHC	1 cut(s)	541
SfaNI	GCATC	4 cut(s)	396, 692, 918, 1038
SfcI	CTRYAG	1 cut(s)	364
SinI	GGWCC	1 cut(s)	229
Sse9I	AATT	3 cut(s)	436, 495, 1038
SseBI	AGGCCT	1 cut(s)	256
SspMI	CTAG	2 cut(s)	576, 1116
StuI	AGGCCT	1 cut(s)	256
StyD4I	CCNGG	4 cut(s)	46, 167, 251, 275
StyI	CCWWGG	1 cut(s)	525
TaaI	ACNGT	4 cut(s)	603, 742, 807, 853
TaqI	TCGA	1 cut(s)	870
TaqII	GACCGA	2 cut(s)	83, 246
TasI	AATT	3 cut(s)	436, 495, 1038
TatI	WGTACW	2 cut(s)	191, 1004
TfiI	GAWTC	3 cut(s)	485, 922, 966
Tru1I	TTAA	3 cut(s)	344, 830, 842
Tru9I	TTAA	3 cut(s)	344, 830, 842
TscAI	CASTG	1 cut(s)	1019
TseFI	GTSAC	1 cut(s)	265
TseI	GCWGC	6 cut(s)	377, 581, 883, 913, 1023, 1026
Tsp45I	GTSAC	1 cut(s)	265
TspDTI	ATGAA	2 cut(s)	477, 833
TspRI	CASTG	1 cut(s)	1019
VpaK11BI	GGWCC	1 cut(s)	229
VspI	ATTAAT	1 cut(s)	830
XapI	RAATTY	1 cut(s)	436
XceI	RCATGY	1 cut(s)	622
XspI	CTAG	2 cut(s)	576, 1116
ZrmI	AGTACT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.