AT5G39940

HI0933-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0007811
Physical Location & Seq
Forward (+)
15987461 .. 15990701
3241 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39940.4

Sequence Viewer

Length: 1443 bp
ATGAGCTTGAATTTGGCAAATCCTGTATGGGTTCCTGTAAAAGCTTTGTTATGTAGAACAATCAGGAGAAGGAGAATTTTCACTGCCACTGCTATAACTAGTTTAGCCGACAAGGGGGAAAAGGATGAGAGTGAGCTTTTGGTTGTTGTTGGTGGTGGAGCAGCTGGAGTTTATGGAGCAATTAGGGCTAAAACTCTCTCACCTGATTTGAGAGTTTTGGTTATTGAAAAAGGGAGTTTTCTTTCTAAGGTGAAGATTTCCGGTGGTGGTCGATGTAATGTGACAAATGGGCATTGCAATGATACTATTAATTTGGCTGGGCATTATCCTCGTGGTCATAAAGAGCTTAAAGGTTCTTTCTTTTACACACATGGACCTGCTGATACTATGTCATGGTTTTCTGAGCATGGAGTGCCACTAAAGACTGAAGATGATGGAAGAGTATTCCCTGTTAGTGATAATTCATTATCTGTAGTTGATTGTCTCTTAAATGAAGCAAACATTAGAGGAGTTAGGCTTGAGAGAGGAAAGTCTGTGTTAGCTGCTTCTATTAAACCCGATGGAAAGTTCCTTGTTAAAGTTGGGAAGCAAAGTGCTGACACGTCTGAATCTATAGAAGCTACATATCTTCTGATTGCAACTGGAAGTAGCCAAAAGGGTCACTCTTTAGCCACTAAATTTGGTCATTCCATTGTAGATCCAGTACCGAGCTTATTCACTTTTAAGATCAATGATCCATTGCTGACCGAGTTAGCAGGGATTAGTTTCTCGAAAGTCCAAGCCAAACTGAAATTAGATAATCCATGCCCGGATTTGTCTAACCTCGTGCAGATTGGTCCTATGCTTGTAACACATTGGGGACTTAGTGGACCGGTTATTCTTCGACTCTCTGCATGGGGTGCACGGTACCTCTTTAGTTCTAAGTACAAAGGGCATCTTATTGTCGACTTCATACCGGATATTAACATCGAAACTGCTAAATCTGTACTCAAAGAACACAAGCTGCAGTTTTCAAAGCACAAAGTGTCCAATTCCTATCCTCCTCAATTTGGTCTTGTCAATAGATTCTGGAGATACATTCTAGACCGCGAGGGTTCTTCAAAGGACACCTTATGGGCTTCATTGTCTAATAACTCCTTGAGCTCTATTTCTGATCTTCTTAAACATTGTACATTTCAAGTCACTGGAAAGGGTCAATACAAAGATGAGTTTGTGACAGCAGGAGGAGTTCCTTTATCCGAGGTTTCTTTGAAGACAATGGAGAGCAAATTGGTTCCAAATCTTTTCTTTGCGGGAGAAGTACTAAATGTAGATGGAGTTACAGGAGGATTCAATTTCCAGAATGCTTGGTCAGGTGGTTATATCGCAGGCACAAACATCGGCGAATTAGCAAGTAGTAGCAGAATAAGTTCGAAAGAAAGAAAAGTTACTATAGGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HI0933_like

Protein Analysis

480

Amino Acids

52.07

Weight (kDa)

9.32

Isoelectric Point (pI)

27.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HI0933_like PF03486 47 - 99 1.2e-12 HI0933-like protein Rossmann domain
Pyr_redox_2 PF07992 47 - 181 3.8e-06 Pyridine nucleotide-disulphide oxidoreductase
HI0933_like PF03486 102 - 417 8.5e-36 HI0933-like protein Rossmann domain
HI0933_like_1st PF22780 197 - 367 2.8e-40 HI0933-like protein barrel and H2TH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 385
Acc65I GGTACC 1 cut(s) 906
AccB1I GGYRCC 1 cut(s) 906
AccI GTMKAC 1 cut(s) 945
AccII CGCG 1 cut(s) 1089
AciI CCGC 2 cut(s) 1087, 1292
AclWI GGATC 2 cut(s) 692, 728
AcsI RAATTY 3 cut(s) 10, 75, 677
AcuI CTGAAG 1 cut(s) 447
AdeI CACNNNGTG 1 cut(s) 1024
AfaI GTAC 6 cut(s) 705, 908, 926, 987, 1171, 1302
AfiI CCNNNNNNNGG 2 cut(s) 114, 1049
AflIII ACRYGT 1 cut(s) 600
AgeI ACCGGT 1 cut(s) 871
AgsI TTSAA 7 cut(s) 10, 227, 1014, 1101, 1178, 1252, 1333
AhlI ACTAGT 1 cut(s) 98
AjiI CACGTC 1 cut(s) 603
Alw21I GWGCWC 2 cut(s) 904, 1145
Alw26I GTCTC 1 cut(s) 488
Alw44I GTGCAC 1 cut(s) 900
AlwI GGATC 2 cut(s) 692, 728
ApaLI GTGCAC 1 cut(s) 900
ApeKI GCWGC 3 cut(s) 161, 542, 1003
ApoI RAATTY 3 cut(s) 10, 75, 677
AseI ATTAAT 1 cut(s) 309
AsiGI ACCGGT 1 cut(s) 871
Asp700I GAANNNNTTC 1 cut(s) 1408
Asp718I GGTACC 1 cut(s) 906
AspS9I GGNCC 3 cut(s) 374, 836, 869
AsuC2I CCSGG 1 cut(s) 809
AsuHPI GGTGA 2 cut(s) 192, 262
AsuII TTCGAA 1 cut(s) 1412
AvaII GGWCC 3 cut(s) 374, 836, 869
BaeGI GKGCMC 1 cut(s) 904
BanI GGYRCC 1 cut(s) 906
BanII GRGCYC 1 cut(s) 1145
BauI CACGAG 2 cut(s) 330, 824
BbsI GAAGAC 1 cut(s) 1259
Bbv12I GWGCWC 2 cut(s) 904, 1145
BbvI GCAGC 3 cut(s) 173, 529, 990
BccI CCATC 3 cut(s) 428, 554, 1307
BcgI CGANNNNNNTGC 4 cut(s) 311, 345, 1360, 1394
BcnI CCSGG 1 cut(s) 809
BcoDI GTCTC 1 cut(s) 488
BcuI ACTAGT 1 cut(s) 98
BfaI CTAG 2 cut(s) 99, 1082
BfmI CTRYAG 4 cut(s) 471, 612, 1004, 1431
BfuAI ACCTGC 1 cut(s) 385
BisI GCNGC 3 cut(s) 162, 543, 1004
BlsI GCNGC 3 cut(s) 163, 544, 1005
BmcAI AGTACT 1 cut(s) 1302
Bme1390I CCNGG 1 cut(s) 809
Bme18I GGWCC 3 cut(s) 374, 836, 869
BmgBI CACGTC 1 cut(s) 603
BmgT120I GGNCC 3 cut(s) 374, 836, 869
BmiI GGNNCC 3 cut(s) 33, 908, 1275
BmrFI CCNGG 1 cut(s) 809
BmsI GCATC 1 cut(s) 943
BpiI GAAGAC 1 cut(s) 1259
BpmI CTGGAG 2 cut(s) 186, 1090
Bpu14I TTCGAA 1 cut(s) 1412
BpuEI CTTGAG 2 cut(s) 539, 1159
BpuMI CCSGG 1 cut(s) 809
BsaJI CCNNGG 1 cut(s) 1239
BsaWI WCCGGW 3 cut(s) 260, 871, 955
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 1049
Bse118I RCCGGY 1 cut(s) 871
Bse1I ACTGG 3 cut(s) 646, 701, 1189
Bse3DI GCAATG 3 cut(s) 292, 304, 737
BseDI CCNNGG 1 cut(s) 1239
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 2 cut(s) 114, 1049
BseMI GCAATG 3 cut(s) 292, 304, 737
BseMII CTCAG 1 cut(s) 393
BseNI ACTGG 3 cut(s) 646, 701, 1189
BseRI GAGGAG 3 cut(s) 522, 1032, 1239
BseSI GKGCMC 1 cut(s) 904
BseXI GCAGC 3 cut(s) 173, 529, 990
BseYI CCCAGC 1 cut(s) 317
BsgI GTGCAG 1 cut(s) 848
Bsh1236I CGCG 1 cut(s) 1089
BshNI GGYRCC 1 cut(s) 906
BshTI ACCGGT 1 cut(s) 871
BsiHKAI GWGCWC 2 cut(s) 904, 1145
BsiSI CCGG 4 cut(s) 261, 809, 872, 956
BslFI GGGAC 1 cut(s) 873
BslI CCNNNNNNNGG 2 cut(s) 114, 1049
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 1 cut(s) 873
BsmI GAATGC 1 cut(s) 1348
Bsp119I TTCGAA 1 cut(s) 1412
Bsp1286I GDGCHC 2 cut(s) 904, 1145
Bsp1407I TGTACA 1 cut(s) 1169
Bsp143I GATC 4 cut(s) 697, 726, 733, 1153
BspACI CCGC 2 cut(s) 1087, 1292
BspCNI CTCAG 1 cut(s) 394
BspFNI CGCG 1 cut(s) 1089
BspLI GGNNCC 3 cut(s) 33, 908, 1275
BspMAI CTGCAG 1 cut(s) 1008
BspMI ACCTGC 1 cut(s) 385
BspPI GGATC 2 cut(s) 692, 728
BspT104I TTCGAA 1 cut(s) 1412
BspT107I GGYRCC 1 cut(s) 906
BsrDI GCAATG 3 cut(s) 292, 304, 737
BsrFI RCCGGY 1 cut(s) 871
BsrGI TGTACA 1 cut(s) 1169
BsrI ACTGG 3 cut(s) 646, 701, 1189
BssAI RCCGGY 1 cut(s) 871
BssECI CCNNGG 1 cut(s) 1239
BssMI GATC 4 cut(s) 697, 726, 733, 1153
BssSI CACGAG 2 cut(s) 330, 824
Bst2BI CACGAG 2 cut(s) 330, 824
Bst4CI ACNGT 1 cut(s) 906
Bst6I CTCTTC 1 cut(s) 433
BstAPI GCANNNNNTGC 2 cut(s) 412, 899
BstAUI TGTACA 1 cut(s) 1169
BstBI TTCGAA 1 cut(s) 1412
BstC8I GCNNGC 1 cut(s) 1369
BstDEI CTNAG 4 cut(s) 246, 402, 863, 921
BstF5I GGATG 1 cut(s) 130
BstFNI CGCG 1 cut(s) 1089
BstKTI GATC 4 cut(s) 700, 729, 736, 1156
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 4 cut(s) 697, 726, 733, 1153
BstMWI GCNNNNNNNGC 3 cut(s) 185, 412, 899
BstSCI CCNGG 1 cut(s) 807
BstSFI CTRYAG 4 cut(s) 471, 612, 1004, 1431
BstSLI GKGCMC 1 cut(s) 904
BstUI CGCG 1 cut(s) 1089
BstV1I GCAGC 3 cut(s) 173, 529, 990
BstV2I GAAGAC 1 cut(s) 1259
BstX2I RGATCY 1 cut(s) 697
BstYI RGATCY 1 cut(s) 697
BtrI CACGTC 1 cut(s) 603
BtsCI GGATG 1 cut(s) 130
BtsI GCAGTG 2 cut(s) 81, 87
BtsIMutI CAGTG 3 cut(s) 81, 87, 1182
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 1369
Cfr10I RCCGGY 1 cut(s) 871
Cfr13I GGNCC 3 cut(s) 374, 836, 869
Csp6I GTAC 6 cut(s) 704, 907, 925, 986, 1170, 1301
CspAI ACCGGT 1 cut(s) 871
CspCI CAANNNNNGTGG 2 cut(s) 661, 696
CviAII CATG 5 cut(s) 371, 393, 407, 804, 894
CviQI GTAC 6 cut(s) 704, 907, 925, 986, 1170, 1301
DdeI CTNAG 4 cut(s) 246, 402, 863, 921
DpnI GATC 4 cut(s) 699, 728, 735, 1155
DpnII GATC 4 cut(s) 697, 726, 733, 1153
DraIII CACNNNGTG 1 cut(s) 1024
Eam1104I CTCTTC 1 cut(s) 433
EarI CTCTTC 1 cut(s) 433
Ecl136II GAGCTC 1 cut(s) 1143
Eco24I GRGCYC 1 cut(s) 1145
Eco47I GGWCC 3 cut(s) 374, 836, 869
Eco53kI GAGCTC 1 cut(s) 1143
Eco57I CTGAAG 1 cut(s) 447
EcoICRI GAGCTC 1 cut(s) 1143
EcoT38I GRGCYC 1 cut(s) 1145
FaeI CATG 5 cut(s) 374, 396, 410, 807, 897
FalI AAGNNNNNCTT 4 cut(s) 921, 953, 1094, 1126
FaqI GGGAC 1 cut(s) 873
FatI CATG 5 cut(s) 370, 392, 406, 803, 893
FauI CCCGC 1 cut(s) 1285
FblI GTMKAC 1 cut(s) 945
Fnu4HI GCNGC 3 cut(s) 162, 543, 1004
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 1145
Fsp4HI GCNGC 3 cut(s) 162, 543, 1004
FspBI CTAG 2 cut(s) 99, 1082
GluI GCNGC 3 cut(s) 162, 543, 1004
GsaI CCCAGC 1 cut(s) 321
GsuI CTGGAG 2 cut(s) 186, 1090
HapII CCGG 4 cut(s) 261, 809, 872, 956
Hin1II CATG 5 cut(s) 374, 396, 410, 807, 897
HincII GTYRAC 1 cut(s) 946
HindII GTYRAC 1 cut(s) 946
HindIII AAGCTT 1 cut(s) 42
HinfI GANTC 4 cut(s) 608, 885, 1065, 1329
HpaII CCGG 4 cut(s) 261, 809, 872, 956
HphI GGTGA 2 cut(s) 192, 262
Hpy166II GTNNAC 3 cut(s) 869, 902, 946
Hpy188I TCNGA 5 cut(s) 403, 607, 633, 1153, 1240
Hpy188III TCNNGA 5 cut(s) 64, 769, 1069, 1082, 1339
Hpy8I GTNNAC 3 cut(s) 869, 902, 946
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 1 cut(s) 906
HpyCH4IV ACGT 1 cut(s) 602
HpyCH4V TGCA 6 cut(s) 297, 638, 829, 893, 902, 1006
HpyF10VI GCNNNNNNNGC 3 cut(s) 185, 412, 899
HpyF3I CTNAG 4 cut(s) 246, 402, 863, 921
HpySE526I ACGT 1 cut(s) 602
Hsp92II CATG 5 cut(s) 374, 396, 410, 807, 897
KpnI GGTACC 1 cut(s) 910
Kzo9I GATC 4 cut(s) 697, 726, 733, 1153
LmnI GCTCC 2 cut(s) 158, 176
Lsp1109I GCAGC 3 cut(s) 173, 529, 990
LweI GCATC 1 cut(s) 943
MaeI CTAG 2 cut(s) 99, 1082
MaeII ACGT 1 cut(s) 602
MaeIII GTNAC 7 cut(s) 280, 659, 847, 1180, 1213, 1318, 1426
MalI GATC 4 cut(s) 699, 728, 735, 1155
MboI GATC 4 cut(s) 697, 726, 733, 1153
MboII GAAGA 8 cut(s) 265, 440, 450, 620, 872, 1089, 1148, 1264
MflI RGATCY 1 cut(s) 697
MhlI GDGCHC 2 cut(s) 904, 1145
MlyI GAGTC 1 cut(s) 879
MroXI GAANNNNTTC 1 cut(s) 1408
MseI TTAA 8 cut(s) 309, 348, 488, 552, 576, 723, 963, 1161
MslI CAYNNNNRTG 1 cut(s) 297
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 4 cut(s) 261, 809, 872, 956
MspR9I CCNGG 1 cut(s) 809
Mva1269I GAATGC 1 cut(s) 1348
MvnI CGCG 1 cut(s) 1089
MwoI GCNNNNNNNGC 3 cut(s) 185, 412, 899
NciI CCSGG 1 cut(s) 809
NdeII GATC 4 cut(s) 697, 726, 733, 1153
NlaIII CATG 5 cut(s) 374, 396, 410, 807, 897
NlaIV GGNNCC 3 cut(s) 33, 908, 1275
NmuCI GTSAC 4 cut(s) 280, 659, 1180, 1213
NspV TTCGAA 1 cut(s) 1412
PctI GAATGC 1 cut(s) 1348
PdmI GAANNNNTTC 1 cut(s) 1408
PfeI GAWTC 3 cut(s) 608, 1065, 1329
PinAI ACCGGT 1 cut(s) 871
PkrI GCNGC 3 cut(s) 163, 544, 1005
PleI GAGTC 1 cut(s) 879
PpsI GAGTC 1 cut(s) 879
PshBI ATTAAT 1 cut(s) 309
Psp124BI GAGCTC 1 cut(s) 1145
PspFI CCCAGC 1 cut(s) 317
PspN4I GGNNCC 3 cut(s) 33, 908, 1275
PspPI GGNCC 3 cut(s) 374, 836, 869
PstI CTGCAG 1 cut(s) 1008
PsuI RGATCY 1 cut(s) 697
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 6 cut(s) 705, 908, 926, 987, 1171, 1302
RsaNI GTAC 6 cut(s) 704, 907, 925, 986, 1170, 1301
RseI CAYNNNNRTG 1 cut(s) 297
SacI GAGCTC 1 cut(s) 1145
SalI GTCGAC 1 cut(s) 944
SaqAI TTAA 8 cut(s) 309, 348, 488, 552, 576, 723, 963, 1161
SatI GCNGC 3 cut(s) 162, 543, 1004
Sau3AI GATC 4 cut(s) 697, 726, 733, 1153
Sau96I GGNCC 3 cut(s) 374, 836, 869
ScaI AGTACT 1 cut(s) 1302
SchI GAGTC 1 cut(s) 879
ScrFI CCNGG 1 cut(s) 809
SduI GDGCHC 2 cut(s) 904, 1145
SfaNI GCATC 1 cut(s) 943
SfcI CTRYAG 4 cut(s) 471, 612, 1004, 1431
SfuI TTCGAA 1 cut(s) 1412
SinI GGWCC 3 cut(s) 374, 836, 869
SmiMI CAYNNNNRTG 1 cut(s) 297
SmlI CTYRAG 2 cut(s) 518, 1138
SmoI CTYRAG 2 cut(s) 518, 1138
SpeI ACTAGT 1 cut(s) 98
SsiI CCGC 2 cut(s) 1087, 1292
SspMI CTAG 2 cut(s) 99, 1082
SstI GAGCTC 1 cut(s) 1145
StyD4I CCNGG 1 cut(s) 807
TaaI ACNGT 1 cut(s) 906
TaiI ACGT 1 cut(s) 605
TaqI TCGA 6 cut(s) 271, 770, 883, 945, 969, 1412
TaqII GACCGA 1 cut(s) 761
TatI WGTACW 4 cut(s) 924, 985, 1169, 1300
TfiI GAWTC 3 cut(s) 608, 1065, 1329
Tru1I TTAA 8 cut(s) 309, 348, 488, 552, 576, 723, 963, 1161
Tru9I TTAA 8 cut(s) 309, 348, 488, 552, 576, 723, 963, 1161
TscAI CASTG 3 cut(s) 88, 94, 1189
TseFI GTSAC 4 cut(s) 280, 659, 1180, 1213
TseI GCWGC 3 cut(s) 161, 542, 1003
Tsp45I GTSAC 4 cut(s) 280, 659, 1180, 1213
TspDTI ATGAA 4 cut(s) 453, 507, 940, 1110
TspRI CASTG 3 cut(s) 88, 94, 1189
VneI GTGCAC 1 cut(s) 900
VpaK11BI GGWCC 3 cut(s) 374, 836, 869
VspI ATTAAT 1 cut(s) 309
XapI RAATTY 3 cut(s) 10, 75, 677
XbaI TCTAGA 1 cut(s) 1081
XmiI GTMKAC 1 cut(s) 945
XmnI GAANNNNTTC 1 cut(s) 1408
XspI CTAG 2 cut(s) 99, 1082
ZrmI AGTACT 1 cut(s) 1302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.