Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007811

Physical Location & Seq

Genomic Coordinates Reverse (-)

25283313 .. 25285959

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G272800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAGCTTCACCTTGGCGCGCTTCGTCCTCCTTCACTCTAGGGTCTGCTCAGAAGCTGCAACTACCACCAAAAACAATGGCGGTCTTATTTCAACCCTCAATAAAAGAAAATTTACTTCGACTGCCATCCCCAGAGCTCAAAATAAGACAAGTGAAGAGCTACTGGTGGTAGTTGGGGGCGGAGCAGCTGGGGTTTATGGAGCAATTAGAGCTAAAACTCTGGCTCCTAATCTCAATGTAGTGGTCATTGAGAAAGGAAAGCCTCTATCCAAGGTAAAAATTTCTGGAGGAGGCCGATGCAATGTGACAAATGGGCATTGTGTTGATAATAAGATGTTGGCAGAAAATTACCCTAGGGGTCATAAAGAATTGAGAGGAGCATTCTTCAATGTGCATGGGCCAGTTGATACCATGTCCTGGTTTTCTGAACATGGGGTTAGGCTGAAGATTGAGGACGATGGAAGGGTATTTCCTGTCAGCAACAGTTCGTCTACGATAATTGATTGTCTCATGTCTGAATCGACACGACTGGGAGTTTCTCTGCAGACTGGAAAAGCTGTGATAACTGCATCTCCTACTGCTGGAGGGAAATTTCTTCTAGGGATTGAAAAGCGCACCTTCAGTTCCCCTGAATATGTTGAAGCTGATTATCTTTTGATTGCCAGCGGTAATAGCAAGCAGGGTTACAGTCTTGCATCTCAGCTTGGTCATTCAATTGTAGATCCAGTACCAAGCTTATTTACTTTCAAGATTGAGGATCCACGGCTGGCAGATTTGTCAGGGATTACATTCCCTAAAGTTAAGGCAACACTGAAAATAGAGAATGCCCGAAGGAATATACCACAGCTTACGCAGGTTGGACCTGTGTTGGTCACGCACTGGGGATTCAGTGGGCCTGCAATTCTTCGGTTATCTGCTTGGGGCGCCTGTGTTTTATCCAGGACTCTTATTGTAGACTTCACACCTGATGTGCATATAGAAGATCTGAAGTCAATCCTCACCCAACACAAAAATCGGTTTGCGAAGCAAAAACTGTCCAATTCATATCCTTCAGAATTTGGCCTTGTGAAGAGATTTTGGATATATATATTGGGTCGCCAGGTTTTATTTTTGTTCCAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HI0933_like

Protein Analysis

375

Amino Acids

40.76

Weight (kDa)

9.76

Isoelectric Point (pI)

43.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39940 AT5G39940 AT5G39940 AT5G39940
fragaria_vesca	FvH4_6g49390 FvH4_6g49390 FvH4_6g49390 FvH4_6g49390 FvH4_6g49390 FvH4_6g49390
prunus_persica	Prupe.3G272800_v2.0.a1
pyrus_communis	pycom111g03530
rosa_chinensis	RchiOBHm_Chr2g0169251
rosa_laevigata	RLG00000021846
rosa_multiflora	Rmu_co8375105.1_g000001
rosa_roxburghii	Rroxscaffold_2G00082310
rosa_rugosa	Rorug02G0538600
rosa_samantha	Rh2AG610100 Rh2BG623000 Rh2BG623100 Rh2CG591500 Rh2DG633800 Rh2DG633900
rosa_wichuraiana	Rw2G050590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	844
AccB1I	GGYRCC	1 cut(s)	923
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccI	GTMKAC	2 cut(s)	491, 954
AccII	CGCG	1 cut(s)	19
AciI	CCGC	3 cut(s)	81, 180, 666
AclWI	GGATC	3 cut(s)	716, 752, 765
AcsI	RAATTY	4 cut(s)	110, 279, 590, 1055
AcuI	CTGAAG	4 cut(s)	464, 604, 1007, 1035
AcyI	GRCGYC	1 cut(s)	924
AfaI	GTAC	1 cut(s)	729
AfiI	CCNNNNNNNGG	2 cut(s)	417, 581
AgsI	TTSAA	6 cut(s)	93, 388, 608, 641, 714, 748
AjnI	CCWGG	3 cut(s)	416, 938, 1098
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	512
AlwI	GGATC	3 cut(s)	716, 752, 765
AlwNI	CAGNNNCTG	1 cut(s)	56
AoxI	GGCC	4 cut(s)	292, 398, 893, 1060
ApeKI	GCWGC	2 cut(s)	56, 185
ApoI	RAATTY	4 cut(s)	110, 279, 590, 1055
AspA2I	CCTAGG	1 cut(s)	353
AspLEI	GCGC	4 cut(s)	19, 21, 615, 926
AspS9I	GGNCC	3 cut(s)	398, 860, 893
AsuHPI	GGTGA	1 cut(s)	991
AvaII	GGWCC	1 cut(s)	860
AvrII	CCTAGG	1 cut(s)	353
BamHI	GGATCC	1 cut(s)	757
BanI	GGYRCC	1 cut(s)	923
BanII	GRGCYC	1 cut(s)	139
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	43, 197
BccI	CCATC	2 cut(s)	134, 452
BceAI	ACGGC	1 cut(s)	779
BciT130I	CCWGG	3 cut(s)	418, 940, 1100
BcoDI	GTCTC	1 cut(s)	512
BfaI	CTAG	3 cut(s)	39, 354, 599
BfmI	CTRYAG	1 cut(s)	542
BfoI	RGCGCY	1 cut(s)	927
BfuAI	ACCTGC	1 cut(s)	844
BglII	AGATCT	1 cut(s)	982
BisI	GCNGC	2 cut(s)	57, 186
BlnI	CCTAGG	1 cut(s)	353
BlsI	GCNGC	2 cut(s)	58, 187
Bme1390I	CCNGG	3 cut(s)	418, 940, 1100
Bme18I	GGWCC	1 cut(s)	860
BmgT120I	GGNCC	3 cut(s)	398, 860, 893
BmiI	GGNNCC	3 cut(s)	225, 759, 925
BmrFI	CCNGG	3 cut(s)	418, 940, 1100
BmrI	ACTGGG	2 cut(s)	539, 889
BmsI	GCATC	3 cut(s)	287, 578, 704
BmuI	ACTGGG	2 cut(s)	539, 889
BpmI	CTGGAG	2 cut(s)	306, 603
BsaHI	GRCGYC	1 cut(s)	924
BsaJI	CCNNGG	4 cut(s)	12, 270, 353, 761
BsaXI	ACNNNNNCTCC	4 cut(s)	208, 238, 556, 586
Bsc4I	CCNNNNNNNGG	2 cut(s)	417, 581
Bse1I	ACTGG	6 cut(s)	168, 401, 534, 553, 725, 884
Bse3DI	GCAATG	1 cut(s)	307
BseBI	CCWGG	3 cut(s)	418, 940, 1100
BseDI	CCNNGG	4 cut(s)	12, 270, 353, 761
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	2 cut(s)	417, 581
BseMI	GCAATG	1 cut(s)	307
BseMII	CTCAG	2 cut(s)	63, 713
BseNI	ACTGG	6 cut(s)	168, 401, 534, 553, 725, 884
BsePI	GCGCGC	1 cut(s)	17
BseRI	GAGGAG	2 cut(s)	303, 390
BseXI	GCAGC	2 cut(s)	43, 197
BseYI	CCCAGC	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	19
BshFI	GGCC	4 cut(s)	294, 400, 895, 1062
BshNI	GGYRCC	1 cut(s)	923
BsiHKAI	GWGCWC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	417, 581
BsmAI	GTCTC	1 cut(s)	512
BsmI	GAATGC	2 cut(s)	380, 829
BsnI	GGCC	4 cut(s)	294, 400, 895, 1062
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	3 cut(s)	721, 757, 982
BspACI	CCGC	3 cut(s)	81, 180, 666
BspANI	GGCC	4 cut(s)	294, 400, 895, 1062
BspCNI	CTCAG	2 cut(s)	62, 712
BspFNI	CGCG	1 cut(s)	19
BspLI	GGNNCC	3 cut(s)	225, 759, 925
BspMAI	CTGCAG	1 cut(s)	546
BspMI	ACCTGC	1 cut(s)	844
BspPI	GGATC	3 cut(s)	716, 752, 765
BspQI	GCTCTTC	1 cut(s)	150
BspT107I	GGYRCC	1 cut(s)	923
BsrDI	GCAATG	1 cut(s)	307
BsrI	ACTGG	6 cut(s)	168, 401, 534, 553, 725, 884
BssECI	CCNNGG	4 cut(s)	12, 270, 353, 761
BssHII	GCGCGC	1 cut(s)	17
BssMI	GATC	3 cut(s)	721, 757, 982
BssNI	GRCGYC	1 cut(s)	924
BssT1I	CCWWGG	3 cut(s)	12, 270, 353
Bst2UI	CCWGG	3 cut(s)	418, 940, 1100
Bst4CI	ACNGT	3 cut(s)	485, 689, 1035
Bst6I	CTCTTC	2 cut(s)	150, 1064
BstACI	GRCGYC	1 cut(s)	924
BstC8I	GCNNGC	5 cut(s)	19, 664, 677, 768, 897
BstDEI	CTNAG	2 cut(s)	49, 699
BstDSI	CCRYGG	1 cut(s)	761
BstF5I	GGATG	1 cut(s)	126
BstFNI	CGCG	1 cut(s)	19
BstH2I	RGCGCY	1 cut(s)	927
BstHHI	GCGC	4 cut(s)	19, 21, 615, 926
BstKTI	GATC	3 cut(s)	724, 760, 985
BstMAI	GTCTC	1 cut(s)	512
BstMBI	GATC	3 cut(s)	721, 757, 982
BstMWI	GCNNNNNNNGC	3 cut(s)	209, 672, 923
BstNI	CCWGG	3 cut(s)	418, 940, 1100
BstSCI	CCNGG	3 cut(s)	416, 938, 1098
BstSFI	CTRYAG	1 cut(s)	542
BstUI	CGCG	1 cut(s)	19
BstV1I	GCAGC	2 cut(s)	43, 197
BstX2I	RGATCY	3 cut(s)	721, 757, 982
BstYI	RGATCY	3 cut(s)	721, 757, 982
BsuRI	GGCC	4 cut(s)	294, 400, 895, 1062
BtgI	CCRYGG	1 cut(s)	761
BtsCI	GGATG	1 cut(s)	126
BtsIMutI	CAGTG	3 cut(s)	809, 877, 895
BveI	ACCTGC	1 cut(s)	844
Cac8I	GCNNGC	5 cut(s)	19, 664, 677, 768, 897
CaiI	CAGNNNCTG	1 cut(s)	56
CfoI	GCGC	4 cut(s)	19, 21, 615, 926
Cfr13I	GGNCC	3 cut(s)	398, 860, 893
Csp6I	GTAC	1 cut(s)	728
CviAII	CATG	4 cut(s)	395, 412, 431, 511
CviQI	GTAC	1 cut(s)	728
DdeI	CTNAG	2 cut(s)	49, 699
DinI	GGCGCC	1 cut(s)	925
DpnI	GATC	3 cut(s)	723, 759, 984
DpnII	GATC	3 cut(s)	721, 757, 982
Eam1104I	CTCTTC	2 cut(s)	150, 1064
EarI	CTCTTC	2 cut(s)	150, 1064
EciI	GGCGGA	1 cut(s)	195
Ecl136II	GAGCTC	1 cut(s)	137
Eco130I	CCWWGG	3 cut(s)	12, 270, 353
Eco24I	GRGCYC	1 cut(s)	139
Eco47I	GGWCC	1 cut(s)	860
Eco53kI	GAGCTC	1 cut(s)	137
Eco57I	CTGAAG	4 cut(s)	464, 604, 1007, 1035
EcoICRI	GAGCTC	1 cut(s)	137
EcoRII	CCWGG	3 cut(s)	416, 938, 1098
EcoT14I	CCWWGG	3 cut(s)	12, 270, 353
EcoT38I	GRGCYC	1 cut(s)	139
EgeI	GGCGCC	1 cut(s)	925
EheI	GGCGCC	1 cut(s)	925
ErhI	CCWWGG	3 cut(s)	12, 270, 353
FaeI	CATG	4 cut(s)	398, 415, 434, 514
FalI	AAGNNNNNCTT	2 cut(s)	602, 634
FatI	CATG	4 cut(s)	394, 411, 430, 510
FblI	GTMKAC	2 cut(s)	491, 954
Fnu4HI	GCNGC	2 cut(s)	57, 186
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	139
Fsp4HI	GCNGC	2 cut(s)	57, 186
FspBI	CTAG	3 cut(s)	39, 354, 599
GlaI	GCGC	4 cut(s)	18, 20, 614, 925
GluI	GCNGC	2 cut(s)	57, 186
GsaI	CCCAGC	1 cut(s)	192
GsuI	CTGGAG	2 cut(s)	306, 603
HaeII	RGCGCY	1 cut(s)	927
HaeIII	GGCC	4 cut(s)	294, 400, 895, 1062
HhaI	GCGC	4 cut(s)	19, 21, 615, 926
Hin1I	GRCGYC	1 cut(s)	924
Hin1II	CATG	4 cut(s)	398, 415, 434, 514
Hin6I	GCGC	4 cut(s)	17, 19, 613, 924
HinP1I	GCGC	4 cut(s)	17, 19, 613, 924
HindIII	AAGCTT	2 cut(s)	733, 1119
HinfI	GANTC	3 cut(s)	518, 885, 943
HphI	GGTGA	1 cut(s)	991
Hpy166II	GTNNAC	2 cut(s)	492, 955
Hpy188I	TCNGA	5 cut(s)	52, 427, 517, 987, 1054
Hpy188III	TCNNGA	2 cut(s)	285, 748
Hpy8I	GTNNAC	2 cut(s)	492, 955
HpyAV	CCTTC	5 cut(s)	41, 456, 628, 825, 1059
HpyCH4III	ACNGT	3 cut(s)	485, 689, 1035
HpyCH4V	TGCA	8 cut(s)	59, 300, 394, 544, 569, 695, 899, 973
HpyF10VI	GCNNNNNNNGC	3 cut(s)	209, 672, 923
HpyF3I	CTNAG	2 cut(s)	49, 699
Hsp92I	GRCGYC	1 cut(s)	924
Hsp92II	CATG	4 cut(s)	398, 415, 434, 514
HspAI	GCGC	4 cut(s)	17, 19, 613, 924
KasI	GGCGCC	1 cut(s)	923
Kzo9I	GATC	3 cut(s)	721, 757, 982
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	4 cut(s)	182, 200, 229, 377
Lsp1109I	GCAGC	2 cut(s)	43, 197
LweI	GCATC	3 cut(s)	287, 578, 704
MaeI	CTAG	3 cut(s)	39, 354, 599
MaeIII	GTNAC	3 cut(s)	304, 683, 871
MalI	GATC	3 cut(s)	723, 759, 984
MboI	GATC	3 cut(s)	721, 757, 982
MboII	GAAGA	7 cut(s)	167, 376, 457, 587, 896, 992, 1081
MfeI	CAATTG	1 cut(s)	714
MflI	RGATCY	3 cut(s)	721, 757, 982
MhlI	GDGCHC	1 cut(s)	139
Mly113I	GGCGCC	1 cut(s)	924
MlyI	GAGTC	1 cut(s)	937
MmeI	TCCRAC	1 cut(s)	838
MseI	TTAA	2 cut(s)	801, 1123
MspA1I	CMGCKG	2 cut(s)	188, 666
MspR9I	CCNGG	3 cut(s)	418, 940, 1100
MunI	CAATTG	1 cut(s)	714
Mva1269I	GAATGC	2 cut(s)	380, 829
MvaI	CCWGG	3 cut(s)	418, 940, 1100
MvnI	CGCG	1 cut(s)	19
MwoI	GCNNNNNNNGC	3 cut(s)	209, 672, 923
NarI	GGCGCC	1 cut(s)	924
NdeII	GATC	3 cut(s)	721, 757, 982
NlaIII	CATG	4 cut(s)	398, 415, 434, 514
NlaIV	GGNNCC	3 cut(s)	225, 759, 925
NmuCI	GTSAC	2 cut(s)	304, 871
PauI	GCGCGC	1 cut(s)	17
PciSI	GCTCTTC	1 cut(s)	150
PctI	GAATGC	2 cut(s)	380, 829
PfeI	GAWTC	2 cut(s)	518, 885
PflMI	CCANNNNNTGG	1 cut(s)	417
PfoI	TCCNGGA	1 cut(s)	938
PkrI	GCNGC	2 cut(s)	58, 187
PleI	GAGTC	1 cut(s)	937
PluTI	GGCGCC	1 cut(s)	927
PpsI	GAGTC	1 cut(s)	937
Psp124BI	GAGCTC	1 cut(s)	139
Psp6I	CCWGG	3 cut(s)	416, 938, 1098
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	3 cut(s)	416, 938, 1098
PspN4I	GGNNCC	3 cut(s)	225, 759, 925
PspPI	GGNCC	3 cut(s)	398, 860, 893
PstI	CTGCAG	1 cut(s)	546
PstNI	CAGNNNCTG	1 cut(s)	56
PsuI	RGATCY	3 cut(s)	721, 757, 982
PteI	GCGCGC	1 cut(s)	17
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	729
RsaNI	GTAC	1 cut(s)	728
SacI	GAGCTC	1 cut(s)	139
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	801, 1123
SatI	GCNGC	2 cut(s)	57, 186
Sau3AI	GATC	3 cut(s)	721, 757, 982
Sau96I	GGNCC	3 cut(s)	398, 860, 893
SchI	GAGTC	1 cut(s)	937
ScrFI	CCNGG	3 cut(s)	418, 940, 1100
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	3 cut(s)	287, 578, 704
SfcI	CTRYAG	1 cut(s)	542
SfoI	GGCGCC	1 cut(s)	925
SinI	GGWCC	1 cut(s)	860
SsiI	CCGC	3 cut(s)	81, 180, 666
SspDI	GGCGCC	1 cut(s)	923
SspMI	CTAG	3 cut(s)	39, 354, 599
SstI	GAGCTC	1 cut(s)	139
StyD4I	CCNGG	3 cut(s)	416, 938, 1098
StyI	CCWWGG	3 cut(s)	12, 270, 353
TaaI	ACNGT	3 cut(s)	485, 689, 1035
TaqI	TCGA	2 cut(s)	119, 521
TfiI	GAWTC	2 cut(s)	518, 885
Tru1I	TTAA	2 cut(s)	801, 1123
Tru9I	TTAA	2 cut(s)	801, 1123
TscAI	CASTG	3 cut(s)	816, 884, 895
TseFI	GTSAC	2 cut(s)	304, 871
TseI	GCWGC	2 cut(s)	56, 185
Tsp45I	GTSAC	2 cut(s)	304, 871
TspDTI	ATGAA	1 cut(s)	1032
TspRI	CASTG	3 cut(s)	816, 884, 895
Van91I	CCANNNNNTGG	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	860
XapI	RAATTY	4 cut(s)	110, 279, 590, 1055
XmaJI	CCTAGG	1 cut(s)	353
XmiI	GTMKAC	2 cut(s)	491, 954
XspI	CTAG	3 cut(s)	39, 354, 599

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.