Rh2BG623100

HI0933-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007811
Physical Location & Seq
Reverse (-)
84521112 .. 84523351
2240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG623100.1

Sequence Viewer

Length: 1161 bp
ATGAGCCTCCCTTTGGCGCGCTTCGCCCTTCCCTCTAAGCTCTTCTCAGAAGCCGCAACTACCGGAAAACGTAACGGTCGTCTTATTTCAACCCTCAAAAAAAGGAAATTTACATCAACTGCCACCCACAGAGCTCAACACAAGGCAAGTGAAGAGGTATTGGTGGTAGTTGGAGCTGGAGCAGCTGGGGTTTATGGAGCAATTCGAGCTAAAACCCTGGCTCCTAATCTCAATGTGGTGCTTATTGAGAAAGCAAGGCCCCTAGCCAAGGTGAAAGTTTCTGGGGGAGGACGGTGCAATGTGACTAATGGGCATTGTGTTGAAGCCATGATGTTGGCAGAAAACTATCCGAGGGGTCATAAAGAATTGAAAGGAGCGTTTTTCAACACGCATGGGCCGGTGGATACCATGACTTGGTTTTCTGACCATGGGGTGGAGCTGAAGACTGAGGATGATGGAAGGGTGTTTCCTGTCAGCAACAGTTCGTCTACGATTATTGATTGTCTCATGTCTGAATCGACGCGGTTGGGAGTTTCTCTGCAGACCGGAAAAGCTGTGATAACTGCATCTCCTACTGATGGTGGAAAATTTCTTCTAGGCATTGAAAAGCGTACACCCAGTTCTGTTGAATATGTTGAAGCTGATTATCTTTTGATTGCCAGCGGTAATGGCAAGCAGGGTTACAGTCTTGCATCTCAGCTTGGTCACTCAATTGTTGATCCCGTACCAAGTCTATTTACTTTCAAGATTGAGGATCCACAGCTGGCCGACATGTCAGGGATTACATTCCCTAAAGTCAAGGCAAAGCTGAAAACAGAGAATGTCCAAAGGAATATACCACAGCTTACACAGGTTGGACCTGTTTTAGTCACACACTGGGGATTCAGTGGGCCAGCAATTCTTCGCTTATCTGCTTGGGGTGCCTGTGTTTTATCCCGTACAGGTTACAAAGGGACTCTTATTCTGGACTTTACACCTGATGTGCATGTAGAAGATGTGAAATCAATCCTCACACAACACAAAATAAGTTTGTGGTACTCCTTTATCTTTTTACTTTCTGAATTTATAGTTTTCTGTTTAACTAAAGGGCATTGCAGAAGTGGAGCTGGTCTGTCTGGGCAAATGGGTAATGATGTGGGTTGGTGGATTATATATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HI0933_like

Protein Analysis

386

Amino Acids

41.77

Weight (kDa)

9.32

Isoelectric Point (pI)

33.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HI0933_like PF03486 54 - 270 3.7e-38 HI0933-like protein Rossmann domain
HI0933_like_1st PF22780 242 - 341 2.6e-19 HI0933-like protein barrel and H2TH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 920
AccB7I CCANNNNNTGG 2 cut(s) 414, 433
AccI GTMKAC 1 cut(s) 488
AccII CGCG 2 cut(s) 19, 523
AciI CCGC 3 cut(s) 54, 523, 663
AclWI GGATC 3 cut(s) 713, 749, 762
AcoI YGGCCR 1 cut(s) 765
AcsI RAATTY 3 cut(s) 107, 587, 1061
AcuI CTGAAG 1 cut(s) 461
AfaI GTAC 4 cut(s) 613, 726, 940, 1037
AfiI CCNNNNNNNGG 5 cut(s) 13, 268, 414, 433, 578
AflIII ACRYGT 1 cut(s) 771
AgsI TTSAA 8 cut(s) 90, 323, 370, 385, 605, 629, 638, 745
AjnI CCWGG 1 cut(s) 216
Alw21I GWGCWC 1 cut(s) 136
Alw26I GTCTC 1 cut(s) 509
AlwI GGATC 3 cut(s) 713, 749, 762
AoxI GGCC 4 cut(s) 257, 395, 765, 890
ApeKI GCWGC 1 cut(s) 182
ApoI RAATTY 3 cut(s) 107, 587, 1061
AspLEI GCGC 2 cut(s) 19, 21
AspS9I GGNCC 4 cut(s) 258, 395, 857, 890
AsuHPI GGTGA 1 cut(s) 283
AvaII GGWCC 1 cut(s) 857
BamHI GGATCC 1 cut(s) 754
BanI GGYRCC 1 cut(s) 920
BanII GRGCYC 1 cut(s) 136
BbsI GAAGAC 1 cut(s) 449
Bbv12I GWGCWC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 194
BccI CCATC 2 cut(s) 449, 572
BciT130I CCWGG 1 cut(s) 218
BciVI GTATCC 1 cut(s) 397
BcoDI GTCTC 1 cut(s) 509
BfaI CTAG 2 cut(s) 263, 596
BfmI CTRYAG 1 cut(s) 539
BfuI GTATCC 1 cut(s) 397
BisI GCNGC 2 cut(s) 54, 183
BlsI GCNGC 2 cut(s) 55, 184
Bme1390I CCNGG 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 857
BmgT120I GGNCC 4 cut(s) 258, 395, 857, 890
BmiI GGNNCC 4 cut(s) 222, 260, 756, 922
BmrFI CCNGG 1 cut(s) 218
BmrI ACTGGG 2 cut(s) 612, 886
BmsI GCATC 2 cut(s) 575, 701
BmuI ACTGGG 2 cut(s) 612, 886
BpiI GAAGAC 1 cut(s) 449
BpmI CTGGAG 1 cut(s) 198
BsaJI CCNNGG 4 cut(s) 216, 267, 350, 427
BsaWI WCCGGW 2 cut(s) 62, 545
BsaXI ACNNNNNCTCC 4 cut(s) 205, 235, 553, 583
Bsc4I CCNNNNNNNGG 5 cut(s) 13, 268, 414, 433, 578
Bse118I RCCGGY 1 cut(s) 397
Bse1I ACTGG 2 cut(s) 618, 881
Bse3DI GCAATG 2 cut(s) 304, 1090
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 4 cut(s) 216, 267, 350, 427
BseGI GGATG 1 cut(s) 457
BseLI CCNNNNNNNGG 5 cut(s) 13, 268, 414, 433, 578
BseMI GCAATG 2 cut(s) 304, 1090
BseMII CTCAG 3 cut(s) 60, 438, 710
BseNI ACTGG 2 cut(s) 618, 881
BsePI GCGCGC 1 cut(s) 17
BseXI GCAGC 1 cut(s) 194
BseYI CCCAGC 1 cut(s) 185
Bsh1236I CGCG 2 cut(s) 19, 523
Bsh1285I CGRYCG 1 cut(s) 79
BshFI GGCC 4 cut(s) 259, 397, 767, 892
BshNI GGYRCC 1 cut(s) 920
BsiEI CGRYCG 1 cut(s) 79
BsiHKAI GWGCWC 1 cut(s) 136
BsiSI CCGG 3 cut(s) 63, 398, 546
BslFI GGGAC 1 cut(s) 967
BslI CCNNNNNNNGG 5 cut(s) 13, 268, 414, 433, 578
BsmAI GTCTC 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 967
BsnI GGCC 4 cut(s) 259, 397, 767, 892
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 2 cut(s) 718, 754
Bsp19I CCATGG 1 cut(s) 427
BspACI CCGC 3 cut(s) 54, 523, 663
BspANI GGCC 4 cut(s) 259, 397, 767, 892
BspCNI CTCAG 3 cut(s) 59, 439, 709
BspFNI CGCG 2 cut(s) 19, 523
BspLI GGNNCC 4 cut(s) 222, 260, 756, 922
BspMAI CTGCAG 1 cut(s) 543
BspPI GGATC 3 cut(s) 713, 749, 762
BspQI GCTCTTC 1 cut(s) 47
BspT107I GGYRCC 1 cut(s) 920
BsrDI GCAATG 2 cut(s) 304, 1090
BsrFI RCCGGY 1 cut(s) 397
BsrI ACTGG 2 cut(s) 618, 881
BssAI RCCGGY 1 cut(s) 397
BssECI CCNNGG 4 cut(s) 216, 267, 350, 427
BssHII GCGCGC 1 cut(s) 17
BssMI GATC 2 cut(s) 718, 754
BssT1I CCWWGG 2 cut(s) 267, 427
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 4 cut(s) 77, 294, 482, 686
Bst6I CTCTTC 2 cut(s) 47, 147
BstC8I GCNNGC 5 cut(s) 19, 661, 674, 765, 894
BstDEI CTNAG 4 cut(s) 36, 46, 447, 696
BstDSI CCRYGG 1 cut(s) 427
BstENI CCTNNNNNAGG 1 cut(s) 266
BstF5I GGATG 1 cut(s) 457
BstFNI CGCG 2 cut(s) 19, 523
BstHHI GCGC 2 cut(s) 19, 21
BstKTI GATC 2 cut(s) 721, 757
BstMAI GTCTC 1 cut(s) 509
BstMBI GATC 2 cut(s) 718, 754
BstMCI CGRYCG 1 cut(s) 79
BstMWI GCNNNNNNNGC 5 cut(s) 23, 182, 206, 669, 920
BstNI CCWGG 1 cut(s) 218
BstNSI RCATGY 2 cut(s) 775, 989
BstSCI CCNGG 1 cut(s) 216
BstSFI CTRYAG 1 cut(s) 539
BstUI CGCG 2 cut(s) 19, 523
BstV1I GCAGC 1 cut(s) 194
BstV2I GAAGAC 1 cut(s) 449
BstX2I RGATCY 1 cut(s) 754
BstXI CCANNNNNNTGG 1 cut(s) 334
BstYI RGATCY 1 cut(s) 754
BsuI GTATCC 1 cut(s) 397
BsuRI GGCC 4 cut(s) 259, 397, 767, 892
BtgI CCRYGG 1 cut(s) 427
BtsCI GGATG 1 cut(s) 457
BtsIMutI CAGTG 2 cut(s) 874, 892
Cac8I GCNNGC 5 cut(s) 19, 661, 674, 765, 894
CfoI GCGC 2 cut(s) 19, 21
Cfr10I RCCGGY 1 cut(s) 397
Cfr13I GGNCC 4 cut(s) 258, 395, 857, 890
CseI GACGC 1 cut(s) 529
Csp6I GTAC 4 cut(s) 612, 725, 939, 1036
CviAII CATG 7 cut(s) 328, 392, 409, 428, 508, 772, 986
CviQI GTAC 4 cut(s) 612, 725, 939, 1036
DdeI CTNAG 4 cut(s) 36, 46, 447, 696
DpnI GATC 2 cut(s) 720, 756
DpnII GATC 2 cut(s) 718, 754
EaeI YGGCCR 1 cut(s) 765
Eam1104I CTCTTC 2 cut(s) 47, 147
EarI CTCTTC 2 cut(s) 47, 147
Ecl136II GAGCTC 1 cut(s) 134
Eco130I CCWWGG 2 cut(s) 267, 427
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 857
Eco53kI GAGCTC 1 cut(s) 134
Eco57I CTGAAG 1 cut(s) 461
EcoICRI GAGCTC 1 cut(s) 134
EcoNI CCTNNNNNAGG 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 2 cut(s) 267, 427
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 2 cut(s) 267, 427
FaeI CATG 7 cut(s) 331, 395, 412, 431, 511, 775, 989
FalI AAGNNNNNCTT 2 cut(s) 942, 974
FaqI GGGAC 1 cut(s) 967
FatI CATG 7 cut(s) 327, 391, 408, 427, 507, 771, 985
FblI GTMKAC 1 cut(s) 488
Fnu4HI GCNGC 2 cut(s) 54, 183
FokI GGATG 1 cut(s) 464
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 2 cut(s) 54, 183
FspBI CTAG 2 cut(s) 263, 596
GlaI GCGC 2 cut(s) 18, 20
GluI GCNGC 2 cut(s) 54, 183
GsaI CCCAGC 1 cut(s) 189
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 4 cut(s) 259, 397, 767, 892
HapII CCGG 3 cut(s) 63, 398, 546
HgaI GACGC 1 cut(s) 529
HhaI GCGC 2 cut(s) 19, 21
Hin1II CATG 7 cut(s) 331, 395, 412, 431, 511, 775, 989
Hin6I GCGC 2 cut(s) 17, 19
HinP1I GCGC 2 cut(s) 17, 19
HinfI GANTC 3 cut(s) 515, 882, 955
HpaII CCGG 3 cut(s) 63, 398, 546
HphI GGTGA 1 cut(s) 283
Hpy166II GTNNAC 2 cut(s) 489, 614
Hpy188I TCNGA 5 cut(s) 49, 351, 424, 514, 1060
Hpy188III TCNNGA 2 cut(s) 745, 965
Hpy8I GTNNAC 2 cut(s) 489, 614
Hpy99I CGWCG 1 cut(s) 523
HpyAV CCTTC 2 cut(s) 38, 453
HpyCH4III ACNGT 4 cut(s) 77, 294, 482, 686
HpyCH4IV ACGT 1 cut(s) 70
HpyCH4V TGCA 6 cut(s) 297, 541, 566, 692, 985, 1095
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 182, 206, 669, 920
HpyF3I CTNAG 4 cut(s) 36, 46, 447, 696
HpySE526I ACGT 1 cut(s) 70
Hsp92II CATG 7 cut(s) 331, 395, 412, 431, 511, 775, 989
HspAI GCGC 2 cut(s) 17, 19
Kzo9I GATC 2 cut(s) 718, 754
LguI GCTCTTC 1 cut(s) 47
LmnI GCTCC 7 cut(s) 173, 179, 197, 226, 374, 436, 1103
Lsp1109I GCAGC 1 cut(s) 194
LweI GCATC 2 cut(s) 575, 701
MaeI CTAG 2 cut(s) 263, 596
MaeII ACGT 1 cut(s) 70
MaeIII GTNAC 6 cut(s) 71, 301, 680, 704, 868, 944
MalI GATC 2 cut(s) 720, 756
MboI GATC 2 cut(s) 718, 754
MboII GAAGA 6 cut(s) 34, 164, 454, 584, 893, 1004
MfeI CAATTG 1 cut(s) 711
MflI RGATCY 1 cut(s) 754
MhlI GDGCHC 1 cut(s) 136
MluCI AATT 7 cut(s) 107, 201, 365, 587, 711, 897, 1061
MlyI GAGTC 1 cut(s) 949
MmeI TCCRAC 2 cut(s) 151, 835
MnlI CCTC 9 cut(s) 17, 43, 104, 148, 281, 345, 442, 745, 1019
MseI TTAA 1 cut(s) 1079
MspA1I CMGCKG 3 cut(s) 185, 663, 763
MspI CCGG 3 cut(s) 63, 398, 546
MspR9I CCNGG 1 cut(s) 218
MunI CAATTG 1 cut(s) 711
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 2 cut(s) 19, 523
MwoI GCNNNNNNNGC 5 cut(s) 23, 182, 206, 669, 920
NcoI CCATGG 1 cut(s) 427
NdeII GATC 2 cut(s) 718, 754
NlaIII CATG 7 cut(s) 331, 395, 412, 431, 511, 775, 989
NlaIV GGNNCC 4 cut(s) 222, 260, 756, 922
NmuCI GTSAC 3 cut(s) 301, 704, 868
NspI RCATGY 2 cut(s) 775, 989
PauI GCGCGC 1 cut(s) 17
PciI ACATGT 1 cut(s) 771
PciSI GCTCTTC 1 cut(s) 47
PcsI WCGNNNNNNNCGW 1 cut(s) 76
PfeI GAWTC 2 cut(s) 515, 882
PflMI CCANNNNNTGG 2 cut(s) 414, 433
PkrI GCNGC 2 cut(s) 55, 184
PleI GAGTC 1 cut(s) 949
PpsI GAGTC 1 cut(s) 949
PscI ACATGT 1 cut(s) 771
Psp124BI GAGCTC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 216
PspFI CCCAGC 1 cut(s) 185
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 4 cut(s) 222, 260, 756, 922
PspPI GGNCC 4 cut(s) 258, 395, 857, 890
PsrI GAACNNNNNNTAC 2 cut(s) 604, 636
PstI CTGCAG 1 cut(s) 543
PsuI RGATCY 1 cut(s) 754
PteI GCGCGC 1 cut(s) 17
PvuII CAGCTG 2 cut(s) 185, 763
RsaI GTAC 4 cut(s) 613, 726, 940, 1037
RsaNI GTAC 4 cut(s) 612, 725, 939, 1036
SacI GAGCTC 1 cut(s) 136
SapI GCTCTTC 1 cut(s) 47
SaqAI TTAA 1 cut(s) 1079
SatI GCNGC 2 cut(s) 54, 183
Sau3AI GATC 2 cut(s) 718, 754
Sau96I GGNCC 4 cut(s) 258, 395, 857, 890
SchI GAGTC 1 cut(s) 949
ScrFI CCNGG 1 cut(s) 218
SduI GDGCHC 1 cut(s) 136
SfaNI GCATC 2 cut(s) 575, 701
SfcI CTRYAG 1 cut(s) 539
SinI GGWCC 1 cut(s) 857
Sse9I AATT 7 cut(s) 107, 201, 365, 587, 711, 897, 1061
SsiI CCGC 3 cut(s) 54, 523, 663
SspMI CTAG 2 cut(s) 263, 596
SstI GAGCTC 1 cut(s) 136
StyD4I CCNGG 1 cut(s) 216
StyI CCWWGG 2 cut(s) 267, 427
TaaI ACNGT 4 cut(s) 77, 294, 482, 686
TaiI ACGT 1 cut(s) 73
TaqI TCGA 2 cut(s) 205, 518
TasI AATT 7 cut(s) 107, 201, 365, 587, 711, 897, 1061
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 2 cut(s) 515, 882
Tru1I TTAA 1 cut(s) 1079
Tru9I TTAA 1 cut(s) 1079
TscAI CASTG 2 cut(s) 881, 892
TseFI GTSAC 3 cut(s) 301, 704, 868
TseI GCWGC 1 cut(s) 182
Tsp45I GTSAC 3 cut(s) 301, 704, 868
TspRI CASTG 2 cut(s) 881, 892
Van91I CCANNNNNTGG 2 cut(s) 414, 433
VpaK11BI GGWCC 1 cut(s) 857
XagI CCTNNNNNAGG 1 cut(s) 266
XapI RAATTY 3 cut(s) 107, 587, 1061
XceI RCATGY 2 cut(s) 775, 989
XmiI GTMKAC 1 cut(s) 488
XspI CTAG 2 cut(s) 263, 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.