Rh2DG633800

HI0933-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0007811
Physical Location & Seq
Reverse (-)
86255596 .. 86257120
1525 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG633800.1

Sequence Viewer

Length: 534 bp
ATGTTTTTTTTTTGTTTTGTTTTTTTAGCTTCATGGTTCCTTGTATTAGCATATGCTGTGTCTGAATTAACAATTCTCTTGTTTGTTGCCTATACCCCTGCGGCCCTGCAGAAGCAAAAGGTAGCTAATTCATATCCTACAGAATTTGGCCTTGTGAAGAGATTTTGGAAATATATATTGGGTCGCCAGGGTTTACTTGGTGATATCTTGTGGGCATCCATCTCAAAGGACTCATTAGTTTCTATTGCCCATATGTTAAAGCACTGTGACTTTTCTGTTAAAGGAAAGAGTCAATATAAGGATGAATTTGTCACTGCTGGTGGTGTTCCACTTTCTGAGATATCATTGAACACAATGGAAAGCAAAATACAGCCACGCCTATTTTTTGCAGGGGAGGTATTGAATGTTGATGGGATAACTGGTGGTTTCAATTTTCAGAATGCTTGGTCTGGGGGATATATTGCGGGAACTAGTATCGGTAAACAAGCGGTTAGTGCTAAACTCTGTGAGGCGAATTCAGTGAGCAATTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HI0933_like

Protein Analysis

177

Amino Acids

19.49

Weight (kDa)

8.75

Isoelectric Point (pI)

25.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HI0933_like_1st PF22780 37 - 104 2.8e-08 HI0933-like protein barrel and H2TH domain
HI0933_like PF03486 71 - 157 3.1e-22 HI0933-like protein Rossmann domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 101, 464, 488
AcsI RAATTY 3 cut(s) 143, 305, 514
AgsI TTSAA 3 cut(s) 349, 403, 430
AhlI ACTAGT 1 cut(s) 470
AjnI CCWGG 1 cut(s) 186
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 2 cut(s) 29, 125
AluI AGCT 2 cut(s) 29, 125
AoxI GGCC 2 cut(s) 102, 148
ApoI RAATTY 3 cut(s) 143, 305, 514
AspS9I GGNCC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 212
BccI CCATC 2 cut(s) 227, 404
BciT130I CCWGG 1 cut(s) 188
BcuI ACTAGT 1 cut(s) 470
BfaI CTAG 2 cut(s) 471, 532
BfmI CTRYAG 2 cut(s) 107, 138
BisI GCNGC 1 cut(s) 102
BlsI GCNGC 1 cut(s) 103
Bme1390I CCNGG 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 424
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 2 cut(s) 215, 307
BseMII CTCAG 1 cut(s) 327
BseNI ACTGG 1 cut(s) 424
BshFI GGCC 2 cut(s) 104, 150
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 2 cut(s) 104, 150
BspACI CCGC 3 cut(s) 101, 464, 488
BspANI GGCC 2 cut(s) 104, 150
BspCNI CTCAG 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 38
BspMAI CTGCAG 1 cut(s) 111
BsrI ACTGG 1 cut(s) 424
BssECI CCNNGG 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 215, 307
BstMWI GCNNNNNNNGC 1 cut(s) 494
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstSFI CTRYAG 2 cut(s) 107, 138
BsuRI GGCC 2 cut(s) 104, 150
BtsCI GGATG 2 cut(s) 215, 307
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 3 cut(s) 262, 312, 525
Cfr13I GGNCC 1 cut(s) 103
CviAII CATG 1 cut(s) 33
CviJI RGCY 5 cut(s) 29, 104, 125, 150, 373
CviKI_1 RGCY 5 cut(s) 29, 104, 125, 150, 373
DdeI CTNAG 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco32I GATATC 2 cut(s) 205, 342
EcoRI GAATTC 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 186
EcoRV GATATC 2 cut(s) 205, 342
FaeI CATG 1 cut(s) 36
FatI CATG 1 cut(s) 32
FauI CCCGC 1 cut(s) 457
FauNDI CATATG 2 cut(s) 52, 252
Fnu4HI GCNGC 1 cut(s) 102
FokI GGATG 2 cut(s) 202, 314
Fsp4HI GCNGC 1 cut(s) 102
FspBI CTAG 2 cut(s) 471, 532
GluI GCNGC 1 cut(s) 102
HaeIII GGCC 2 cut(s) 104, 150
Hin1II CATG 1 cut(s) 36
HinfI GANTC 2 cut(s) 230, 289
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 194, 482
Hpy188I TCNGA 3 cut(s) 64, 337, 438
Hpy8I GTNNAC 2 cut(s) 194, 482
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4V TGCA 2 cut(s) 109, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 494
HpyF3I CTNAG 1 cut(s) 336
Hsp92II CATG 1 cut(s) 36
LpnPI CCDG 8 cut(s) 111, 119, 173, 200, 303, 375, 405, 435
LweI GCATC 1 cut(s) 224
MaeI CTAG 2 cut(s) 471, 532
MaeIII GTNAC 2 cut(s) 266, 310
MboII GAAGA 1 cut(s) 169
MluCI AATT 8 cut(s) 65, 72, 127, 143, 305, 430, 514, 526
MlyI GAGTC 2 cut(s) 224, 298
MnlI CCTC 2 cut(s) 388, 502
MseI TTAA 3 cut(s) 68, 257, 279
MspR9I CCNGG 1 cut(s) 188
Mva1269I GAATGC 1 cut(s) 445
MvaI CCWGG 1 cut(s) 188
MwoI GCNNNNNNNGC 1 cut(s) 494
NdeI CATATG 2 cut(s) 52, 252
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 1 cut(s) 38
NmuCI GTSAC 2 cut(s) 266, 310
PctI GAATGC 1 cut(s) 445
PkrI GCNGC 1 cut(s) 103
PleI GAGTC 2 cut(s) 224, 297
PpsI GAGTC 2 cut(s) 224, 297
Psp6I CCWGG 1 cut(s) 186
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 103
PstI CTGCAG 1 cut(s) 111
SaqAI TTAA 3 cut(s) 68, 257, 279
SatI GCNGC 1 cut(s) 102
Sau96I GGNCC 1 cut(s) 103
SchI GAGTC 2 cut(s) 224, 298
ScrFI CCNGG 1 cut(s) 188
SetI ASST 4 cut(s) 31, 123, 127, 399
SfaNI GCATC 1 cut(s) 224
SfcI CTRYAG 2 cut(s) 107, 138
SpeI ACTAGT 1 cut(s) 470
Sse9I AATT 8 cut(s) 65, 72, 127, 143, 305, 430, 514, 526
SsiI CCGC 3 cut(s) 101, 464, 488
SspMI CTAG 2 cut(s) 471, 532
StyD4I CCNGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 266
TasI AATT 8 cut(s) 65, 72, 127, 143, 305, 430, 514, 526
TauI GCSGC 1 cut(s) 104
Tru1I TTAA 3 cut(s) 68, 257, 279
Tru9I TTAA 3 cut(s) 68, 257, 279
TscAI CASTG 3 cut(s) 269, 319, 525
TseFI GTSAC 2 cut(s) 266, 310
Tsp45I GTSAC 2 cut(s) 266, 310
TspDTI ATGAA 3 cut(s) 21, 120, 318
TspRI CASTG 3 cut(s) 269, 319, 525
XapI RAATTY 3 cut(s) 143, 305, 514
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XspI CTAG 2 cut(s) 471, 532
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.